HEADER STRUCTURAL PROTEIN 09-APR-21 7O5Y TITLE PILA MINOR PILIN OF STREPTOCOCCUS SANGUINIS TYPE IV PILI COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYPE IV PILUS BIOGENESIS PROTEIN PILA; COMPND 3 CHAIN: B, C, D, A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS SANGUINIS; SOURCE 3 ORGANISM_TAXID: 1305; SOURCE 4 GENE: PILA, SSV_2239; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PILIN, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.SHEPPARD,V.PELICIC,J.B.BERRY REVDAT 3 25-JAN-23 7O5Y 1 JRNL REVDAT 2 18-JAN-23 7O5Y 1 JRNL REVDAT 1 20-APR-22 7O5Y 0 JRNL AUTH M.SHAHIN,D.SHEPPARD,C.RAYNAUD,J.L.BERRY,I.GURUNG,L.M.SILVA, JRNL AUTH 2 T.FEIZI,Y.LIU,V.PELICIC JRNL TITL CHARACTERIZATION OF A GLYCAN-BINDING COMPLEX OF MINOR PILINS JRNL TITL 2 COMPLETES THE ANALYSIS OF STREPTOCOCCUS SANGUINIS TYPE 4 JRNL TITL 3 PILI SUBUNITS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 120 37120 2023 JRNL REFN ESSN 1091-6490 JRNL PMID 36626560 JRNL DOI 10.1073/PNAS.2216237120 REMARK 2 REMARK 2 RESOLUTION. 1.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 8032 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4136 REMARK 3 ANGLE : 0.839 5604 REMARK 3 CHIRALITY : 0.048 594 REMARK 3 PLANARITY : 0.004 742 REMARK 3 DIHEDRAL : 17.932 1502 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7O5Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-APR-21. REMARK 100 THE DEPOSITION ID IS D_1292115149. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9200 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78394 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.770 REMARK 200 RESOLUTION RANGE LOW (A) : 93.320 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 12.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: CRANK2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8; 0.1 M MAGNESIUM REMARK 280 NITRATE HEXAHYDRATE; 23 % (V/V) PEG 2000, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.56500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 46.66000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 46.66000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 135.84750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 46.66000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 46.66000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 45.28250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 46.66000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.66000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 135.84750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 46.66000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.66000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 45.28250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 90.56500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 46.66000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 46.66000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 45.28250 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 377 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE B 1 REMARK 465 ASP B 2 REMARK 465 HIS B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 ASP B 9 REMARK 465 THR B 10 REMARK 465 GLY B 11 REMARK 465 LYS B 140 REMARK 465 MSE C 1 REMARK 465 ASP C 2 REMARK 465 HIS C 3 REMARK 465 HIS C 4 REMARK 465 HIS C 5 REMARK 465 HIS C 6 REMARK 465 HIS C 7 REMARK 465 HIS C 8 REMARK 465 ASP C 9 REMARK 465 THR C 10 REMARK 465 LYS C 140 REMARK 465 MSE D 1 REMARK 465 HIS D 7 REMARK 465 HIS D 8 REMARK 465 ASP D 9 REMARK 465 THR D 10 REMARK 465 GLY D 11 REMARK 465 ALA D 138 REMARK 465 GLN D 139 REMARK 465 LYS D 140 REMARK 465 MSE A 1 REMARK 465 ASP A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 ASP A 9 REMARK 465 THR A 10 REMARK 465 GLY A 11 REMARK 465 GLN A 12 REMARK 465 GLN A 139 REMARK 465 LYS A 140 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 290 O HOH A 301 1.82 REMARK 500 O HOH C 305 O HOH C 385 1.86 REMARK 500 O HOH B 205 O HOH B 327 1.86 REMARK 500 O HOH B 224 O HOH B 262 1.87 REMARK 500 O HOH B 343 O HOH B 362 1.90 REMARK 500 O HOH C 418 O HOH D 321 1.91 REMARK 500 O HOH A 289 O HOH A 294 1.92 REMARK 500 OE1 GLU B 83 O HOH B 201 1.97 REMARK 500 O HOH D 339 O HOH D 371 1.97 REMARK 500 O HOH B 343 O HOH B 372 1.98 REMARK 500 O HOH C 353 O HOH C 423 1.98 REMARK 500 O HOH B 312 O HOH B 369 1.98 REMARK 500 O HOH A 237 O HOH A 288 1.98 REMARK 500 O SER D 70 O HOH D 301 2.03 REMARK 500 O HOH B 306 O HOH D 371 2.03 REMARK 500 O HOH D 306 O HOH D 367 2.05 REMARK 500 O HOH B 334 O HOH A 263 2.07 REMARK 500 N SER A 13 O HOH A 201 2.07 REMARK 500 OD1 ASP D 62 O HOH D 302 2.09 REMARK 500 CL CL D 201 O HOH D 381 2.10 REMARK 500 O HOH B 303 O HOH B 348 2.12 REMARK 500 O HOH B 313 O HOH B 330 2.14 REMARK 500 O HOH B 327 O HOH B 346 2.14 REMARK 500 O HOH B 297 O HOH B 321 2.16 REMARK 500 O HOH B 311 O HOH B 351 2.17 REMARK 500 OG SER A 137 O HOH A 202 2.18 REMARK 500 O HOH A 222 O HOH A 310 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 325 O HOH D 328 8565 1.80 REMARK 500 O HOH D 337 O HOH A 247 4555 1.99 REMARK 500 OE2 GLU B 96 NZ LYS A 75 7545 2.03 REMARK 500 O HOH B 262 O HOH C 339 3544 2.08 REMARK 500 O HOH B 338 O HOH C 314 6455 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR D 26 CB TYR D 26 CG -0.194 REMARK 500 TYR D 26 CG TYR D 26 CD1 -0.082 REMARK 500 TYR D 26 CD1 TYR D 26 CE1 -0.256 REMARK 500 TYR D 26 CZ TYR D 26 OH -0.153 REMARK 500 TYR D 26 CE2 TYR D 26 CD2 -0.250 REMARK 500 TYR A 26 CB TYR A 26 CG 0.109 REMARK 500 TYR A 26 CG TYR A 26 CD1 0.113 REMARK 500 TYR A 26 CD1 TYR A 26 CE1 0.110 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR D 26 CA - CB - CG ANGL. DEV. = -15.8 DEGREES REMARK 500 TYR D 26 CB - CG - CD2 ANGL. DEV. = -7.3 DEGREES REMARK 500 TYR D 26 CD1 - CG - CD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 TYR D 26 CD1 - CE1 - CZ ANGL. DEV. = -6.5 DEGREES REMARK 500 TYR D 26 CE1 - CZ - CE2 ANGL. DEV. = 10.5 DEGREES REMARK 500 TYR D 26 CZ - CE2 - CD2 ANGL. DEV. = -9.0 DEGREES REMARK 500 TYR A 26 CA - CB - CG ANGL. DEV. = 12.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER D 70 163.23 173.98 REMARK 500 ASP D 76 8.36 -64.97 REMARK 500 LYS D 126 15.45 53.21 REMARK 500 LYS A 126 13.09 58.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 377 DISTANCE = 6.03 ANGSTROMS DBREF1 7O5Y B 9 140 UNP A0A0B7GNW3_STRSA DBREF2 7O5Y B A0A0B7GNW3 33 164 DBREF1 7O5Y C 9 140 UNP A0A0B7GNW3_STRSA DBREF2 7O5Y C A0A0B7GNW3 33 164 DBREF1 7O5Y D 9 140 UNP A0A0B7GNW3_STRSA DBREF2 7O5Y D A0A0B7GNW3 33 164 DBREF1 7O5Y A 9 140 UNP A0A0B7GNW3_STRSA DBREF2 7O5Y A A0A0B7GNW3 33 164 SEQADV 7O5Y MSE B 1 UNP A0A0B7GNW INITIATING METHIONINE SEQADV 7O5Y ASP B 2 UNP A0A0B7GNW EXPRESSION TAG SEQADV 7O5Y HIS B 3 UNP A0A0B7GNW EXPRESSION TAG SEQADV 7O5Y HIS B 4 UNP A0A0B7GNW EXPRESSION TAG SEQADV 7O5Y HIS B 5 UNP A0A0B7GNW EXPRESSION TAG SEQADV 7O5Y HIS B 6 UNP A0A0B7GNW EXPRESSION TAG SEQADV 7O5Y HIS B 7 UNP A0A0B7GNW EXPRESSION TAG SEQADV 7O5Y HIS B 8 UNP A0A0B7GNW EXPRESSION TAG SEQADV 7O5Y MSE C 1 UNP A0A0B7GNW INITIATING METHIONINE SEQADV 7O5Y ASP C 2 UNP A0A0B7GNW EXPRESSION TAG SEQADV 7O5Y HIS C 3 UNP A0A0B7GNW EXPRESSION TAG SEQADV 7O5Y HIS C 4 UNP A0A0B7GNW EXPRESSION TAG SEQADV 7O5Y HIS C 5 UNP A0A0B7GNW EXPRESSION TAG SEQADV 7O5Y HIS C 6 UNP A0A0B7GNW EXPRESSION TAG SEQADV 7O5Y HIS C 7 UNP A0A0B7GNW EXPRESSION TAG SEQADV 7O5Y HIS C 8 UNP A0A0B7GNW EXPRESSION TAG SEQADV 7O5Y MSE D 1 UNP A0A0B7GNW INITIATING METHIONINE SEQADV 7O5Y ASP D 2 UNP A0A0B7GNW EXPRESSION TAG SEQADV 7O5Y HIS D 3 UNP A0A0B7GNW EXPRESSION TAG SEQADV 7O5Y HIS D 4 UNP A0A0B7GNW EXPRESSION TAG SEQADV 7O5Y HIS D 5 UNP A0A0B7GNW EXPRESSION TAG SEQADV 7O5Y HIS D 6 UNP A0A0B7GNW EXPRESSION TAG SEQADV 7O5Y HIS D 7 UNP A0A0B7GNW EXPRESSION TAG SEQADV 7O5Y HIS D 8 UNP A0A0B7GNW EXPRESSION TAG SEQADV 7O5Y MSE A 1 UNP A0A0B7GNW INITIATING METHIONINE SEQADV 7O5Y ASP A 2 UNP A0A0B7GNW EXPRESSION TAG SEQADV 7O5Y HIS A 3 UNP A0A0B7GNW EXPRESSION TAG SEQADV 7O5Y HIS A 4 UNP A0A0B7GNW EXPRESSION TAG SEQADV 7O5Y HIS A 5 UNP A0A0B7GNW EXPRESSION TAG SEQADV 7O5Y HIS A 6 UNP A0A0B7GNW EXPRESSION TAG SEQADV 7O5Y HIS A 7 UNP A0A0B7GNW EXPRESSION TAG SEQADV 7O5Y HIS A 8 UNP A0A0B7GNW EXPRESSION TAG SEQRES 1 B 140 MSE ASP HIS HIS HIS HIS HIS HIS ASP THR GLY GLN SER SEQRES 2 B 140 GLN THR GLN ARG MSE TYR ASN TYR LEU LYS ALA LYS TYR SEQRES 3 B 140 THR ALA THR SER GLY THR GLN LEU ALA TRP GLY ALA TYR SEQRES 4 B 140 LEU ASP PRO VAL ASP GLY ASN PRO SER SER VAL TYR ALA SEQRES 5 B 140 GLU PHE ASP GLU ARG ALA HIS ASN VAL ASP PRO SER THR SEQRES 6 B 140 GLU PRO ILE LYS SER THR HIS THR PHE LYS ASP GLY SER SEQRES 7 B 140 VAL ALA GLU ILE GLU MSE ASN GLY GLN LEU VAL ASP GLY SEQRES 8 B 140 LEU THR GLY PRO GLU ASN TYR ASN ILE THR ILE LYS SER SEQRES 9 B 140 LYS SER LYS LEU ALA GLY SER ASN ASP TYR TYR GLU HIS SEQRES 10 B 140 ILE VAL THR PHE ASN PHE ASP THR LYS GLY ILE ARG SER SEQRES 11 B 140 GLU GLU GLY HIS LEU ARG SER ALA GLN LYS SEQRES 1 C 140 MSE ASP HIS HIS HIS HIS HIS HIS ASP THR GLY GLN SER SEQRES 2 C 140 GLN THR GLN ARG MSE TYR ASN TYR LEU LYS ALA LYS TYR SEQRES 3 C 140 THR ALA THR SER GLY THR GLN LEU ALA TRP GLY ALA TYR SEQRES 4 C 140 LEU ASP PRO VAL ASP GLY ASN PRO SER SER VAL TYR ALA SEQRES 5 C 140 GLU PHE ASP GLU ARG ALA HIS ASN VAL ASP PRO SER THR SEQRES 6 C 140 GLU PRO ILE LYS SER THR HIS THR PHE LYS ASP GLY SER SEQRES 7 C 140 VAL ALA GLU ILE GLU MSE ASN GLY GLN LEU VAL ASP GLY SEQRES 8 C 140 LEU THR GLY PRO GLU ASN TYR ASN ILE THR ILE LYS SER SEQRES 9 C 140 LYS SER LYS LEU ALA GLY SER ASN ASP TYR TYR GLU HIS SEQRES 10 C 140 ILE VAL THR PHE ASN PHE ASP THR LYS GLY ILE ARG SER SEQRES 11 C 140 GLU GLU GLY HIS LEU ARG SER ALA GLN LYS SEQRES 1 D 140 MSE ASP HIS HIS HIS HIS HIS HIS ASP THR GLY GLN SER SEQRES 2 D 140 GLN THR GLN ARG MSE TYR ASN TYR LEU LYS ALA LYS TYR SEQRES 3 D 140 THR ALA THR SER GLY THR GLN LEU ALA TRP GLY ALA TYR SEQRES 4 D 140 LEU ASP PRO VAL ASP GLY ASN PRO SER SER VAL TYR ALA SEQRES 5 D 140 GLU PHE ASP GLU ARG ALA HIS ASN VAL ASP PRO SER THR SEQRES 6 D 140 GLU PRO ILE LYS SER THR HIS THR PHE LYS ASP GLY SER SEQRES 7 D 140 VAL ALA GLU ILE GLU MSE ASN GLY GLN LEU VAL ASP GLY SEQRES 8 D 140 LEU THR GLY PRO GLU ASN TYR ASN ILE THR ILE LYS SER SEQRES 9 D 140 LYS SER LYS LEU ALA GLY SER ASN ASP TYR TYR GLU HIS SEQRES 10 D 140 ILE VAL THR PHE ASN PHE ASP THR LYS GLY ILE ARG SER SEQRES 11 D 140 GLU GLU GLY HIS LEU ARG SER ALA GLN LYS SEQRES 1 A 140 MSE ASP HIS HIS HIS HIS HIS HIS ASP THR GLY GLN SER SEQRES 2 A 140 GLN THR GLN ARG MSE TYR ASN TYR LEU LYS ALA LYS TYR SEQRES 3 A 140 THR ALA THR SER GLY THR GLN LEU ALA TRP GLY ALA TYR SEQRES 4 A 140 LEU ASP PRO VAL ASP GLY ASN PRO SER SER VAL TYR ALA SEQRES 5 A 140 GLU PHE ASP GLU ARG ALA HIS ASN VAL ASP PRO SER THR SEQRES 6 A 140 GLU PRO ILE LYS SER THR HIS THR PHE LYS ASP GLY SER SEQRES 7 A 140 VAL ALA GLU ILE GLU MSE ASN GLY GLN LEU VAL ASP GLY SEQRES 8 A 140 LEU THR GLY PRO GLU ASN TYR ASN ILE THR ILE LYS SER SEQRES 9 A 140 LYS SER LYS LEU ALA GLY SER ASN ASP TYR TYR GLU HIS SEQRES 10 A 140 ILE VAL THR PHE ASN PHE ASP THR LYS GLY ILE ARG SER SEQRES 11 A 140 GLU GLU GLY HIS LEU ARG SER ALA GLN LYS MODRES 7O5Y MSE B 18 MET MODIFIED RESIDUE MODRES 7O5Y MSE B 84 MET MODIFIED RESIDUE MODRES 7O5Y MSE C 18 MET MODIFIED RESIDUE MODRES 7O5Y MSE C 84 MET MODIFIED RESIDUE MODRES 7O5Y MSE D 18 MET MODIFIED RESIDUE MODRES 7O5Y MSE D 84 MET MODIFIED RESIDUE MODRES 7O5Y MSE A 18 MET MODIFIED RESIDUE MODRES 7O5Y MSE A 84 MET MODIFIED RESIDUE HET MSE B 18 8 HET MSE B 84 8 HET MSE C 18 8 HET MSE C 84 8 HET MSE D 18 8 HET MSE D 84 8 HET MSE A 18 8 HET MSE A 84 8 HET CL C 201 1 HET CL D 201 1 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 5 CL 2(CL 1-) FORMUL 7 HOH *507(H2 O) HELIX 1 AA1 SER B 13 ASP B 41 1 29 HELIX 2 AA2 SER B 48 HIS B 59 1 12 HELIX 3 AA3 GLY B 94 GLU B 96 5 3 HELIX 4 AA4 SER C 13 ASP C 41 1 29 HELIX 5 AA5 SER C 48 HIS C 59 1 12 HELIX 6 AA6 GLY C 94 GLU C 96 5 3 HELIX 7 AA7 SER D 13 ASP D 41 1 29 HELIX 8 AA8 SER D 48 HIS D 59 1 12 HELIX 9 AA9 GLY D 94 GLU D 96 5 3 HELIX 10 AB1 GLN A 14 ASP A 41 1 28 HELIX 11 AB2 SER A 48 HIS A 59 1 12 HELIX 12 AB3 GLY A 94 GLU A 96 5 3 SHEET 1 AA1 5 ILE B 68 THR B 73 0 SHEET 2 AA1 5 VAL B 79 LEU B 88 -1 O ILE B 82 N SER B 70 SHEET 3 AA1 5 TYR B 98 LYS B 107 -1 O THR B 101 N ASN B 85 SHEET 4 AA1 5 TYR B 114 ASN B 122 -1 O VAL B 119 N ILE B 102 SHEET 5 AA1 5 ILE B 128 ARG B 136 -1 O ARG B 136 N TYR B 114 SHEET 1 AA2 5 ILE C 68 THR C 73 0 SHEET 2 AA2 5 VAL C 79 LEU C 88 -1 O ILE C 82 N SER C 70 SHEET 3 AA2 5 TYR C 98 LYS C 107 -1 O THR C 101 N ASN C 85 SHEET 4 AA2 5 TYR C 114 ASN C 122 -1 O VAL C 119 N ILE C 102 SHEET 5 AA2 5 ILE C 128 ARG C 136 -1 O ARG C 129 N THR C 120 SHEET 1 AA3 5 ILE D 68 THR D 73 0 SHEET 2 AA3 5 VAL D 79 LEU D 88 -1 O MSE D 84 N ILE D 68 SHEET 3 AA3 5 TYR D 98 LYS D 107 -1 O LYS D 103 N GLU D 83 SHEET 4 AA3 5 TYR D 114 ASN D 122 -1 O VAL D 119 N ILE D 102 SHEET 5 AA3 5 ILE D 128 ARG D 136 -1 O ARG D 136 N TYR D 114 SHEET 1 AA4 5 ILE A 68 THR A 73 0 SHEET 2 AA4 5 VAL A 79 LEU A 88 -1 O ILE A 82 N SER A 70 SHEET 3 AA4 5 TYR A 98 LYS A 107 -1 O THR A 101 N ASN A 85 SHEET 4 AA4 5 TYR A 114 ASN A 122 -1 O PHE A 121 N ILE A 100 SHEET 5 AA4 5 ILE A 128 ARG A 136 -1 O ARG A 136 N TYR A 114 LINK C ARG B 17 N MSE B 18 1555 1555 1.33 LINK C MSE B 18 N TYR B 19 1555 1555 1.33 LINK C GLU B 83 N MSE B 84 1555 1555 1.33 LINK C MSE B 84 N ASN B 85 1555 1555 1.33 LINK C ARG C 17 N MSE C 18 1555 1555 1.32 LINK C MSE C 18 N TYR C 19 1555 1555 1.34 LINK C GLU C 83 N MSE C 84 1555 1555 1.33 LINK C MSE C 84 N ASN C 85 1555 1555 1.33 LINK C ARG D 17 N MSE D 18 1555 1555 1.33 LINK C MSE D 18 N TYR D 19 1555 1555 1.34 LINK C GLU D 83 N MSE D 84 1555 1555 1.33 LINK C MSE D 84 N ASN D 85 1555 1555 1.33 LINK C ARG A 17 N MSE A 18 1555 1555 1.33 LINK C MSE A 18 N TYR A 19 1555 1555 1.33 LINK C GLU A 83 N MSE A 84 1555 1555 1.33 LINK C MSE A 84 N ASN A 85 1555 1555 1.33 CRYST1 93.320 93.320 181.130 90.00 90.00 90.00 P 43 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010716 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010716 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005521 0.00000