HEADER PROTEIN BINDING 11-APR-21 7O6N TITLE CRYSTAL STRUCTURE OF C. ELEGANS ERH-2 PID-3 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENHANCER OF RUDIMENTARY HOMOLOG 2; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PROTEIN PID-3; COMPND 7 CHAIN: C, D; COMPND 8 SYNONYM: PIRNA BIOGENESIS AND CHROMOSOME SEGREGATION PROTEIN 1,PIRNA- COMPND 9 INDUCED SILENCING DEFECTIVE PROTEIN 3; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_TAXID: 6239; SOURCE 4 GENE: ERH-2, F35G12.11; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 9 ORGANISM_TAXID: 6239; SOURCE 10 GENE: PID-3, PICS-1, Y23H5A.3; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ERH-2 PID-3 COMPLEX PIRNA PROCESSING PETISCO, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR S.FALK,R.F.KETTING REVDAT 3 31-JAN-24 7O6N 1 REMARK REVDAT 2 06-OCT-21 7O6N 1 JRNL REVDAT 1 25-AUG-21 7O6N 0 JRNL AUTH C.PEREZ-BORRAJERO,N.PODVALNAYA,K.HOLLEIS,R.LICHTENBERGER, JRNL AUTH 2 E.KARAULANOV,B.SIMON,J.BASQUIN,J.HENNIG,R.F.KETTING,S.FALK JRNL TITL STRUCTURAL BASIS OF PETISCO COMPLEX ASSEMBLY DURING PIRNA JRNL TITL 2 BIOGENESIS IN C. ELEGANS . JRNL REF GENES DEV. V. 35 1304 2021 JRNL REFN ISSN 0890-9369 JRNL PMID 34413138 JRNL DOI 10.1101/GAD.348648.121 REMARK 2 REMARK 2 RESOLUTION. 2.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.1_4122 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 16338 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1634 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.7900 - 4.9700 1.00 1343 149 0.2032 0.2165 REMARK 3 2 4.9600 - 3.9400 1.00 1291 144 0.1531 0.2088 REMARK 3 3 3.9400 - 3.4400 1.00 1236 138 0.1838 0.2190 REMARK 3 4 3.4400 - 3.1300 1.00 1237 137 0.2171 0.2758 REMARK 3 5 3.1300 - 2.9100 1.00 1236 137 0.2666 0.2890 REMARK 3 6 2.9000 - 2.7300 1.00 1237 138 0.2418 0.2605 REMARK 3 7 2.7300 - 2.6000 1.00 1227 136 0.2354 0.2963 REMARK 3 8 2.6000 - 2.4800 1.00 1203 134 0.2704 0.3422 REMARK 3 9 2.4800 - 2.3900 1.00 1211 134 0.3076 0.3906 REMARK 3 10 2.3900 - 2.3100 1.00 1213 134 0.2868 0.3173 REMARK 3 11 2.3100 - 2.2300 1.00 1216 136 0.3141 0.3225 REMARK 3 12 2.2300 - 2.1700 0.86 1054 117 0.3341 0.3799 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.306 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.982 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.32 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 76.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 1768 REMARK 3 ANGLE : 0.652 2391 REMARK 3 CHIRALITY : 0.039 274 REMARK 3 PLANARITY : 0.005 302 REMARK 3 DIHEDRAL : 4.299 240 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.6324 2.5195 16.8409 REMARK 3 T TENSOR REMARK 3 T11: 0.5919 T22: 0.5328 REMARK 3 T33: 0.6452 T12: -0.0545 REMARK 3 T13: 0.0433 T23: -0.1366 REMARK 3 L TENSOR REMARK 3 L11: 8.9761 L22: 3.1120 REMARK 3 L33: 5.3230 L12: -4.3792 REMARK 3 L13: 1.9418 L23: -2.1562 REMARK 3 S TENSOR REMARK 3 S11: -0.8949 S12: 0.5575 S13: 0.4059 REMARK 3 S21: 0.5362 S22: 0.1370 S23: -0.1257 REMARK 3 S31: -1.3221 S32: 0.3304 S33: 0.5218 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 17 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.6558 2.3448 13.0854 REMARK 3 T TENSOR REMARK 3 T11: 0.5426 T22: 0.4530 REMARK 3 T33: 0.3261 T12: -0.0406 REMARK 3 T13: 0.1008 T23: -0.0781 REMARK 3 L TENSOR REMARK 3 L11: 4.6214 L22: 8.8773 REMARK 3 L33: 9.5649 L12: 1.3461 REMARK 3 L13: -0.2903 L23: 0.9006 REMARK 3 S TENSOR REMARK 3 S11: 0.1200 S12: -0.2386 S13: -0.2121 REMARK 3 S21: -0.2088 S22: 0.3120 S23: -0.7429 REMARK 3 S31: -1.2160 S32: 0.6900 S33: -0.2099 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 28 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7852 13.8383 20.1498 REMARK 3 T TENSOR REMARK 3 T11: 1.2619 T22: 0.7197 REMARK 3 T33: 0.8520 T12: -0.2965 REMARK 3 T13: 0.1564 T23: -0.1387 REMARK 3 L TENSOR REMARK 3 L11: 3.3584 L22: 2.0575 REMARK 3 L33: 7.7419 L12: -4.7396 REMARK 3 L13: 0.1664 L23: -2.5175 REMARK 3 S TENSOR REMARK 3 S11: 0.2255 S12: -0.0167 S13: 1.6513 REMARK 3 S21: -0.0792 S22: 0.1996 S23: -0.7738 REMARK 3 S31: -2.2041 S32: 0.5645 S33: -0.4056 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 46 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.6989 27.1759 23.8189 REMARK 3 T TENSOR REMARK 3 T11: 2.1789 T22: 0.8011 REMARK 3 T33: 1.0369 T12: -0.1751 REMARK 3 T13: 0.2788 T23: 0.0717 REMARK 3 L TENSOR REMARK 3 L11: 5.3923 L22: 0.8048 REMARK 3 L33: 8.5652 L12: -2.0595 REMARK 3 L13: -1.5584 L23: 0.2366 REMARK 3 S TENSOR REMARK 3 S11: 3.7498 S12: -0.0278 S13: 0.5544 REMARK 3 S21: -2.0135 S22: -0.0361 S23: 1.2967 REMARK 3 S31: 0.9184 S32: 0.6401 S33: -2.1593 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.8041 14.1292 27.1688 REMARK 3 T TENSOR REMARK 3 T11: 1.5256 T22: 0.7639 REMARK 3 T33: 0.6292 T12: 0.1717 REMARK 3 T13: -0.1047 T23: -0.0911 REMARK 3 L TENSOR REMARK 3 L11: 2.9607 L22: 6.0094 REMARK 3 L33: 7.0452 L12: -3.5303 REMARK 3 L13: -2.9082 L23: 6.2059 REMARK 3 S TENSOR REMARK 3 S11: -0.2504 S12: -0.1242 S13: 0.0259 REMARK 3 S21: -0.3955 S22: -0.7685 S23: 1.6640 REMARK 3 S31: -2.1890 S32: -1.2201 S33: 0.9697 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 65 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.8229 -0.5968 21.5428 REMARK 3 T TENSOR REMARK 3 T11: 0.7182 T22: 0.6021 REMARK 3 T33: 0.4993 T12: -0.0635 REMARK 3 T13: 0.0715 T23: -0.1059 REMARK 3 L TENSOR REMARK 3 L11: 4.5252 L22: 3.8309 REMARK 3 L33: 4.0832 L12: -4.1726 REMARK 3 L13: -0.6434 L23: 1.7962 REMARK 3 S TENSOR REMARK 3 S11: 0.3632 S12: -0.5566 S13: 0.3120 REMARK 3 S21: -0.6713 S22: 0.1964 S23: -0.4380 REMARK 3 S31: -0.6616 S32: 0.1448 S33: -0.5969 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 75 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.1801 -8.1431 24.2916 REMARK 3 T TENSOR REMARK 3 T11: 0.5895 T22: 0.6205 REMARK 3 T33: 0.4559 T12: -0.0148 REMARK 3 T13: -0.0276 T23: -0.0784 REMARK 3 L TENSOR REMARK 3 L11: 7.3933 L22: 2.2063 REMARK 3 L33: 9.7231 L12: 0.8904 REMARK 3 L13: -0.4591 L23: 0.3661 REMARK 3 S TENSOR REMARK 3 S11: 0.3981 S12: -0.9563 S13: 0.4575 REMARK 3 S21: 1.2354 S22: 0.0713 S23: 0.0821 REMARK 3 S31: 0.2482 S32: 0.1507 S33: -0.1315 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 85 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.5916 8.2528 30.4998 REMARK 3 T TENSOR REMARK 3 T11: 0.8312 T22: 0.6861 REMARK 3 T33: 0.7350 T12: -0.0657 REMARK 3 T13: 0.1110 T23: -0.1600 REMARK 3 L TENSOR REMARK 3 L11: 2.8041 L22: 8.6909 REMARK 3 L33: 3.0312 L12: 1.3191 REMARK 3 L13: 1.1849 L23: 4.8977 REMARK 3 S TENSOR REMARK 3 S11: -0.3792 S12: -1.8077 S13: 0.5283 REMARK 3 S21: 0.5384 S22: 0.5948 S23: -1.1878 REMARK 3 S31: -1.0639 S32: 0.0125 S33: -0.5323 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.3864 -7.1420 6.2706 REMARK 3 T TENSOR REMARK 3 T11: 0.3841 T22: 0.4900 REMARK 3 T33: 0.5414 T12: -0.0034 REMARK 3 T13: 0.0855 T23: -0.0822 REMARK 3 L TENSOR REMARK 3 L11: 1.8727 L22: 2.7454 REMARK 3 L33: 8.9159 L12: -1.0548 REMARK 3 L13: 1.0119 L23: -0.9952 REMARK 3 S TENSOR REMARK 3 S11: -0.0095 S12: -0.0595 S13: -0.1105 REMARK 3 S21: -0.0373 S22: 0.1271 S23: 0.2097 REMARK 3 S31: -0.1279 S32: -0.5209 S33: -0.1130 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 46 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.9202 -14.2754 -7.6976 REMARK 3 T TENSOR REMARK 3 T11: 0.5215 T22: 0.7213 REMARK 3 T33: 0.5616 T12: 0.0078 REMARK 3 T13: 0.0223 T23: -0.1674 REMARK 3 L TENSOR REMARK 3 L11: 7.8095 L22: 0.0163 REMARK 3 L33: 8.5173 L12: 0.2773 REMARK 3 L13: 4.6539 L23: 0.8738 REMARK 3 S TENSOR REMARK 3 S11: 0.0946 S12: 0.5853 S13: -0.3087 REMARK 3 S21: -0.4623 S22: -0.0093 S23: -0.2307 REMARK 3 S31: 0.4044 S32: 0.5339 S33: -0.2375 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 65 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.5859 -12.5701 16.6244 REMARK 3 T TENSOR REMARK 3 T11: 0.5273 T22: 0.4783 REMARK 3 T33: 0.5187 T12: 0.0123 REMARK 3 T13: -0.0161 T23: -0.0818 REMARK 3 L TENSOR REMARK 3 L11: 4.2810 L22: 8.1839 REMARK 3 L33: 3.1731 L12: -1.3077 REMARK 3 L13: 2.7503 L23: -2.1495 REMARK 3 S TENSOR REMARK 3 S11: 0.1653 S12: 0.0294 S13: -0.4554 REMARK 3 S21: 0.8527 S22: 0.0985 S23: -0.0419 REMARK 3 S31: -0.3654 S32: 0.4477 S33: -0.2810 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 85 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.0547 -20.4169 4.0924 REMARK 3 T TENSOR REMARK 3 T11: 0.4972 T22: 0.5862 REMARK 3 T33: 0.7231 T12: -0.0683 REMARK 3 T13: 0.0084 T23: -0.0916 REMARK 3 L TENSOR REMARK 3 L11: 2.9544 L22: 9.3475 REMARK 3 L33: 7.1256 L12: 0.3148 REMARK 3 L13: 4.4385 L23: 2.5545 REMARK 3 S TENSOR REMARK 3 S11: 0.2240 S12: 0.4759 S13: -0.9105 REMARK 3 S21: 0.4506 S22: 0.4074 S23: -0.1087 REMARK 3 S31: 1.2065 S32: 0.0261 S33: -0.5211 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 177 THROUGH 193 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.4243 -0.9941 0.2334 REMARK 3 T TENSOR REMARK 3 T11: 0.6447 T22: 0.7618 REMARK 3 T33: 0.5924 T12: 0.0623 REMARK 3 T13: -0.0771 T23: 0.0582 REMARK 3 L TENSOR REMARK 3 L11: 3.9435 L22: 2.1316 REMARK 3 L33: 3.3924 L12: 0.7626 REMARK 3 L13: -3.2301 L23: 0.2866 REMARK 3 S TENSOR REMARK 3 S11: 0.1073 S12: 1.6225 S13: 0.7734 REMARK 3 S21: -0.4122 S22: 0.1361 S23: 0.7009 REMARK 3 S31: -1.1247 S32: -1.6962 S33: -0.0814 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 179 THROUGH 193 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.4682 12.7129 11.2660 REMARK 3 T TENSOR REMARK 3 T11: 1.4582 T22: 0.7045 REMARK 3 T33: 0.6231 T12: -0.2104 REMARK 3 T13: 0.1306 T23: -0.0476 REMARK 3 L TENSOR REMARK 3 L11: 3.0046 L22: 3.2065 REMARK 3 L33: 8.2687 L12: -2.7602 REMARK 3 L13: 0.2889 L23: 0.5043 REMARK 3 S TENSOR REMARK 3 S11: 0.0833 S12: 0.0606 S13: 0.1304 REMARK 3 S21: 0.1967 S22: 0.2617 S23: -0.7433 REMARK 3 S31: -3.0224 S32: 0.1545 S33: -0.3431 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 3 through 96 or REMARK 3 (resid 97 and (name N or name CA or name REMARK 3 C or name O or name CB )))) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 3 through 42 or REMARK 3 (resid 43 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 44 or REMARK 3 (resid 45 through 49 and (name N or name REMARK 3 CA or name C or name O or name CB )) or REMARK 3 resid 50 through 52 or (resid 53 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 54 or (resid 55 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 56 or (resid 57 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 58 through 59 or REMARK 3 (resid 60 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 61 REMARK 3 through 63 or (resid 64 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 65 through 74 or (resid 75 REMARK 3 through 77 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 78 REMARK 3 through 97)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : ens_2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "C" and (resid 179 through 180 or REMARK 3 (resid 181 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 182 REMARK 3 through 187 or (resid 188 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 189 through 192 or (resid 193 REMARK 3 and (name N or name CA or name C or name REMARK 3 O or name CB )))) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : chain "D" REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7O6N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-APR-21. REMARK 100 THE DEPOSITION ID IS D_1292115245. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16511 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.170 REMARK 200 RESOLUTION RANGE LOW (A) : 48.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 12.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.17 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7O6L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM FORMATE DIHYDRATE 20 % REMARK 280 W/V PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.49350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.80400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.47250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.80400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.49350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.47250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 ASP A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 98 REMARK 465 ARG A 99 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 ASP B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLY C 165 REMARK 465 PRO C 166 REMARK 465 ASP C 167 REMARK 465 SER C 168 REMARK 465 MET C 169 REMARK 465 TRP C 170 REMARK 465 THR C 171 REMARK 465 PHE C 172 REMARK 465 ASP C 173 REMARK 465 LYS C 174 REMARK 465 VAL C 175 REMARK 465 LEU C 176 REMARK 465 GLU C 194 REMARK 465 GLU C 195 REMARK 465 PRO C 196 REMARK 465 ARG C 197 REMARK 465 GLY C 198 REMARK 465 ALA C 199 REMARK 465 ASP C 200 REMARK 465 GLN C 201 REMARK 465 GLU C 202 REMARK 465 ASN C 203 REMARK 465 GLY D 165 REMARK 465 PRO D 166 REMARK 465 ASP D 167 REMARK 465 SER D 168 REMARK 465 MET D 169 REMARK 465 TRP D 170 REMARK 465 THR D 171 REMARK 465 PHE D 172 REMARK 465 ASP D 173 REMARK 465 LYS D 174 REMARK 465 VAL D 175 REMARK 465 LEU D 176 REMARK 465 PHE D 177 REMARK 465 ASN D 178 REMARK 465 GLU D 194 REMARK 465 GLU D 195 REMARK 465 PRO D 196 REMARK 465 ARG D 197 REMARK 465 GLY D 198 REMARK 465 ALA D 199 REMARK 465 ASP D 200 REMARK 465 GLN D 201 REMARK 465 GLU D 202 REMARK 465 ASN D 203 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 3 OG1 CG2 REMARK 470 LEU A 43 CG CD1 CD2 REMARK 470 LYS A 45 CG CD CE NZ REMARK 470 LYS A 46 CG CD CE NZ REMARK 470 SER A 47 OG REMARK 470 TYR A 53 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 VAL A 55 CG1 CG2 REMARK 470 GLN A 57 CG CD OE1 NE2 REMARK 470 GLU A 60 CG CD OE1 OE2 REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 ARG A 75 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 76 CG CD OE1 OE2 REMARK 470 THR A 77 OG1 CG2 REMARK 470 THR B 3 OG1 CG2 REMARK 470 ARG B 97 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 99 CG CD NE CZ NH1 NH2 REMARK 470 PHE C 177 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU C 180 CG CD OE1 OE2 REMARK 470 GLU D 180 CG CD OE1 OE2 REMARK 470 ASP D 181 CG OD1 OD2 REMARK 470 LYS D 188 CG CD CE NZ REMARK 470 GLU D 193 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 48 77.36 56.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7O6L RELATED DB: PDB REMARK 900 7O6L CONTAINS THE PROTEIN WITHOUT THE PID-3 PEPTIDE BOUND DBREF 7O6N A 1 99 UNP Q20057 Q20057_CAEEL 1 99 DBREF 7O6N B 1 99 UNP Q20057 Q20057_CAEEL 1 99 DBREF 7O6N C 171 203 UNP O76616 PID3_CAEEL 171 203 DBREF 7O6N D 171 203 UNP O76616 PID3_CAEEL 171 203 SEQADV 7O6N GLY A -3 UNP Q20057 EXPRESSION TAG SEQADV 7O6N PRO A -2 UNP Q20057 EXPRESSION TAG SEQADV 7O6N ASP A -1 UNP Q20057 EXPRESSION TAG SEQADV 7O6N SER A 0 UNP Q20057 EXPRESSION TAG SEQADV 7O6N GLY B -3 UNP Q20057 EXPRESSION TAG SEQADV 7O6N PRO B -2 UNP Q20057 EXPRESSION TAG SEQADV 7O6N ASP B -1 UNP Q20057 EXPRESSION TAG SEQADV 7O6N SER B 0 UNP Q20057 EXPRESSION TAG SEQADV 7O6N GLY C 165 UNP O76616 EXPRESSION TAG SEQADV 7O6N PRO C 166 UNP O76616 EXPRESSION TAG SEQADV 7O6N ASP C 167 UNP O76616 EXPRESSION TAG SEQADV 7O6N SER C 168 UNP O76616 EXPRESSION TAG SEQADV 7O6N MET C 169 UNP O76616 EXPRESSION TAG SEQADV 7O6N TRP C 170 UNP O76616 EXPRESSION TAG SEQADV 7O6N GLY D 165 UNP O76616 EXPRESSION TAG SEQADV 7O6N PRO D 166 UNP O76616 EXPRESSION TAG SEQADV 7O6N ASP D 167 UNP O76616 EXPRESSION TAG SEQADV 7O6N SER D 168 UNP O76616 EXPRESSION TAG SEQADV 7O6N MET D 169 UNP O76616 EXPRESSION TAG SEQADV 7O6N TRP D 170 UNP O76616 EXPRESSION TAG SEQRES 1 A 103 GLY PRO ASP SER MET SER THR SER SER HIS THR VAL LEU SEQRES 2 A 103 LEU ILE GLN THR SER PRO ARG LEU ASP SER ARG THR TRP SEQRES 3 A 103 GLY ASP TYR GLU SER VAL THR ASP ALA LEU ASP ALA LEU SEQRES 4 A 103 CYS LYS MET PHE GLU ASP PHE LEU SER LYS LYS SER ALA SEQRES 5 A 103 ALA PRO VAL THR TYR ASP VAL SER GLN VAL TYR GLU PHE SEQRES 6 A 103 LEU ASP LYS LEU SER ASP VAL SER MET MET ILE PHE ASN SEQRES 7 A 103 ARG GLU THR GLY GLN TYR ILE GLY ARG THR ARG ALA TRP SEQRES 8 A 103 ILE LYS GLN GLN VAL TYR GLU MET MET ARG GLY ARG SEQRES 1 B 103 GLY PRO ASP SER MET SER THR SER SER HIS THR VAL LEU SEQRES 2 B 103 LEU ILE GLN THR SER PRO ARG LEU ASP SER ARG THR TRP SEQRES 3 B 103 GLY ASP TYR GLU SER VAL THR ASP ALA LEU ASP ALA LEU SEQRES 4 B 103 CYS LYS MET PHE GLU ASP PHE LEU SER LYS LYS SER ALA SEQRES 5 B 103 ALA PRO VAL THR TYR ASP VAL SER GLN VAL TYR GLU PHE SEQRES 6 B 103 LEU ASP LYS LEU SER ASP VAL SER MET MET ILE PHE ASN SEQRES 7 B 103 ARG GLU THR GLY GLN TYR ILE GLY ARG THR ARG ALA TRP SEQRES 8 B 103 ILE LYS GLN GLN VAL TYR GLU MET MET ARG GLY ARG SEQRES 1 C 39 GLY PRO ASP SER MET TRP THR PHE ASP LYS VAL LEU PHE SEQRES 2 C 39 ASN SER GLU ASP ILE LYS ASP SER VAL PHE LYS VAL LEU SEQRES 3 C 39 HIS ALA GLU GLU GLU PRO ARG GLY ALA ASP GLN GLU ASN SEQRES 1 D 39 GLY PRO ASP SER MET TRP THR PHE ASP LYS VAL LEU PHE SEQRES 2 D 39 ASN SER GLU ASP ILE LYS ASP SER VAL PHE LYS VAL LEU SEQRES 3 D 39 HIS ALA GLU GLU GLU PRO ARG GLY ALA ASP GLN GLU ASN HET FMT B 101 3 HETNAM FMT FORMIC ACID FORMUL 5 FMT C H2 O2 FORMUL 6 HOH *27(H2 O) HELIX 1 AA1 ARG A 16 ASP A 18 5 3 HELIX 2 AA2 SER A 27 ALA A 48 1 22 HELIX 3 AA3 ASP A 54 LEU A 65 1 12 HELIX 4 AA4 THR A 84 ARG A 97 1 14 HELIX 5 AA5 ARG B 16 ASP B 18 5 3 HELIX 6 AA6 SER B 27 LYS B 46 1 20 HELIX 7 AA7 ASP B 54 LEU B 65 1 12 HELIX 8 AA8 THR B 84 GLY B 98 1 15 HELIX 9 AA9 ASN C 178 HIS C 191 1 14 HELIX 10 AB1 GLU D 180 HIS D 191 1 12 SHEET 1 AA1 4 ARG A 20 TYR A 25 0 SHEET 2 AA1 4 THR A 7 GLN A 12 -1 N LEU A 9 O GLY A 23 SHEET 3 AA1 4 ASP A 67 ASN A 74 -1 O ASP A 67 N GLN A 12 SHEET 4 AA1 4 GLN A 79 ARG A 83 -1 O ILE A 81 N ILE A 72 SHEET 1 AA2 4 ARG B 20 TYR B 25 0 SHEET 2 AA2 4 THR B 7 GLN B 12 -1 N LEU B 9 O GLY B 23 SHEET 3 AA2 4 ASP B 67 ASN B 74 -1 O SER B 69 N LEU B 10 SHEET 4 AA2 4 GLN B 79 ARG B 83 -1 O ARG B 83 N MET B 70 SITE 1 AC1 4 ARG A 20 ASP B 24 TYR B 25 LEU C 190 CRYST1 44.987 52.945 125.608 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022229 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018888 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007961 0.00000 MTRIX1 1 -0.765360 -0.472882 0.436586 -5.40713 1 MTRIX2 1 -0.455791 -0.080687 -0.886422 10.23111 1 MTRIX3 1 0.454400 -0.877424 -0.153781 13.57436 1 MTRIX1 2 -0.769312 -0.461789 0.441486 -5.45318 1 MTRIX2 2 -0.484980 -0.027709 -0.874086 10.43381 1 MTRIX3 2 0.415877 -0.886557 -0.202642 13.71352 1