HEADER CHAPERONE 12-APR-21 7O6S TITLE CRYSTAL STRUCTURE OF A SHORTENED IPGC VARIANT IN COMPLEX WITH N-(2H-1, TITLE 2 3-BENZODIOXOL-5-YLMETHYL)CYCLOPENTANAMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHAPERONE PROTEIN IPGC; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHIGELLA FLEXNERI; SOURCE 3 ORGANISM_TAXID: 623; SOURCE 4 GENE: IPGC, IPPI, CP0129; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS IPGC, DIMER, CHAPERONE, SHIGELLA, MUTANT, MAGNESIUM, CHLORINE, N-(2H- KEYWDS 2 1, 3-BENZODIOXOL-5-YLMETHYL)CYCLOPENTANAMINE EXPDTA X-RAY DIFFRACTION AUTHOR M.GARDONYI,A.HEINE,G.KLEBE REVDAT 2 31-JAN-24 7O6S 1 REMARK REVDAT 1 20-APR-22 7O6S 0 JRNL AUTH M.GARDONYI,A.HEINE,G.KLEBE JRNL TITL CRYSTAL STRUCTURE OF A SHORTENED IPGC VARIANT IN COMPLEX JRNL TITL 2 WITH N-(2H-1,3-BENZODIOXOL-5-YLMETHYL)CYCLOPENTANAMINE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 43077 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2155 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 1.6100 - 1.5800 0.98 2634 139 0.2683 0.3058 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.163 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.01 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2413 REMARK 3 ANGLE : 0.986 3292 REMARK 3 CHIRALITY : 0.055 358 REMARK 3 PLANARITY : 0.007 440 REMARK 3 DIHEDRAL : 14.058 1438 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 19 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 24 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.9937 13.7359 -1.7921 REMARK 3 T TENSOR REMARK 3 T11: 0.2145 T22: 0.4706 REMARK 3 T33: 0.4236 T12: -0.0678 REMARK 3 T13: 0.0539 T23: -0.0732 REMARK 3 L TENSOR REMARK 3 L11: 9.0052 L22: 5.6650 REMARK 3 L33: 5.8200 L12: -0.4376 REMARK 3 L13: 4.0874 L23: -1.2269 REMARK 3 S TENSOR REMARK 3 S11: -0.0401 S12: 0.1233 S13: -0.9166 REMARK 3 S21: 0.1234 S22: -0.1525 S23: 0.3374 REMARK 3 S31: 0.4393 S32: -1.0780 S33: 0.1270 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.6736 23.2635 -5.5247 REMARK 3 T TENSOR REMARK 3 T11: 0.4468 T22: 0.4179 REMARK 3 T33: 0.4120 T12: 0.0581 REMARK 3 T13: -0.0257 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 9.8560 L22: 3.2954 REMARK 3 L33: 2.5396 L12: 5.5083 REMARK 3 L13: 4.8684 L23: 2.8644 REMARK 3 S TENSOR REMARK 3 S11: -0.1688 S12: -0.1929 S13: 0.9362 REMARK 3 S21: -0.2212 S22: -0.0495 S23: 0.9844 REMARK 3 S31: -0.6866 S32: -1.1212 S33: 0.3008 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 40 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.5605 24.1331 -7.7827 REMARK 3 T TENSOR REMARK 3 T11: 0.3299 T22: 0.2320 REMARK 3 T33: 0.1808 T12: -0.0613 REMARK 3 T13: 0.0312 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 6.3784 L22: 2.1815 REMARK 3 L33: 4.7782 L12: 0.2964 REMARK 3 L13: 4.9666 L23: -0.2782 REMARK 3 S TENSOR REMARK 3 S11: -0.3212 S12: 0.3384 S13: -0.0332 REMARK 3 S21: -0.2237 S22: 0.1427 S23: 0.0751 REMARK 3 S31: -0.3116 S32: 0.2632 S33: 0.1817 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 54 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.4104 13.6998 -7.1373 REMARK 3 T TENSOR REMARK 3 T11: 0.1573 T22: 0.1247 REMARK 3 T33: 0.1214 T12: -0.0422 REMARK 3 T13: 0.0099 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 1.0173 L22: 2.4778 REMARK 3 L33: 4.6103 L12: -1.2935 REMARK 3 L13: -0.4302 L23: 1.5163 REMARK 3 S TENSOR REMARK 3 S11: 0.0447 S12: 0.0671 S13: -0.0572 REMARK 3 S21: -0.0160 S22: -0.0790 S23: 0.0974 REMARK 3 S31: -0.0305 S32: -0.2035 S33: 0.0391 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 79 THROUGH 85 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.4326 12.4963 -9.1997 REMARK 3 T TENSOR REMARK 3 T11: 0.1966 T22: 0.2733 REMARK 3 T33: 0.1682 T12: -0.0823 REMARK 3 T13: -0.0037 T23: -0.0230 REMARK 3 L TENSOR REMARK 3 L11: 7.3932 L22: 3.8885 REMARK 3 L33: 1.3027 L12: 1.7525 REMARK 3 L13: -2.9326 L23: -0.5638 REMARK 3 S TENSOR REMARK 3 S11: 0.3105 S12: -0.9527 S13: 0.1529 REMARK 3 S21: 0.6384 S22: -0.2581 S23: -0.2600 REMARK 3 S31: -0.5979 S32: 0.4297 S33: -0.0949 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 86 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.8330 5.3866 -11.5910 REMARK 3 T TENSOR REMARK 3 T11: 0.2606 T22: 0.2572 REMARK 3 T33: 0.2929 T12: -0.0632 REMARK 3 T13: -0.0124 T23: 0.0358 REMARK 3 L TENSOR REMARK 3 L11: 6.1881 L22: 3.4796 REMARK 3 L33: 7.1160 L12: -1.4253 REMARK 3 L13: -4.1534 L23: 0.7975 REMARK 3 S TENSOR REMARK 3 S11: 0.0069 S12: -0.4512 S13: -0.7654 REMARK 3 S21: 0.1399 S22: -0.1658 S23: -0.4779 REMARK 3 S31: -0.0521 S32: 0.5544 S33: 0.1709 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 90 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.8229 6.1991 -19.4356 REMARK 3 T TENSOR REMARK 3 T11: 0.1967 T22: 0.1192 REMARK 3 T33: 0.1486 T12: -0.0335 REMARK 3 T13: 0.0096 T23: -0.0168 REMARK 3 L TENSOR REMARK 3 L11: 5.6919 L22: 1.6802 REMARK 3 L33: 1.7295 L12: -0.1900 REMARK 3 L13: -0.3934 L23: -0.6596 REMARK 3 S TENSOR REMARK 3 S11: 0.0981 S12: -0.0033 S13: 0.0106 REMARK 3 S21: -0.1176 S22: -0.0779 S23: -0.0769 REMARK 3 S31: -0.0091 S32: 0.0261 S33: -0.0190 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 122 THROUGH 134 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.4799 3.5035 -28.4260 REMARK 3 T TENSOR REMARK 3 T11: 0.2655 T22: 0.1906 REMARK 3 T33: 0.1989 T12: -0.0850 REMARK 3 T13: 0.0443 T23: -0.0296 REMARK 3 L TENSOR REMARK 3 L11: 8.2162 L22: 4.9019 REMARK 3 L33: 7.5734 L12: -4.1810 REMARK 3 L13: 5.6291 L23: -3.3502 REMARK 3 S TENSOR REMARK 3 S11: -0.0345 S12: 0.5693 S13: -0.5143 REMARK 3 S21: -0.2928 S22: 0.1119 S23: -0.0720 REMARK 3 S31: 0.4514 S32: -0.0377 S33: -0.1257 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 135 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.9756 11.1437 -30.9331 REMARK 3 T TENSOR REMARK 3 T11: 0.2621 T22: 0.2836 REMARK 3 T33: 0.2490 T12: -0.0819 REMARK 3 T13: 0.0246 T23: 0.0305 REMARK 3 L TENSOR REMARK 3 L11: 8.5259 L22: 5.7220 REMARK 3 L33: 2.7604 L12: -5.3160 REMARK 3 L13: 1.6913 L23: -1.2952 REMARK 3 S TENSOR REMARK 3 S11: 0.0582 S12: 0.6877 S13: 0.0238 REMARK 3 S21: -0.2748 S22: -0.1616 S23: -0.2464 REMARK 3 S31: -0.1023 S32: 0.0056 S33: 0.1174 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 9 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.7491 2.3348 -4.1242 REMARK 3 T TENSOR REMARK 3 T11: 0.3420 T22: 0.2149 REMARK 3 T33: 0.2417 T12: -0.0473 REMARK 3 T13: 0.0160 T23: 0.0354 REMARK 3 L TENSOR REMARK 3 L11: 4.3645 L22: 0.4473 REMARK 3 L33: 3.0409 L12: -1.1372 REMARK 3 L13: 0.0434 L23: -0.2474 REMARK 3 S TENSOR REMARK 3 S11: 0.5534 S12: -0.0835 S13: 0.1571 REMARK 3 S21: 0.4676 S22: -0.4007 S23: -0.1632 REMARK 3 S31: 0.0517 S32: -0.0246 S33: -0.0836 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 23 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.7359 -8.9921 -2.5944 REMARK 3 T TENSOR REMARK 3 T11: 0.2393 T22: 0.5522 REMARK 3 T33: 0.4990 T12: -0.0790 REMARK 3 T13: -0.0180 T23: 0.0409 REMARK 3 L TENSOR REMARK 3 L11: 2.9326 L22: 2.5391 REMARK 3 L33: 3.9006 L12: 2.0579 REMARK 3 L13: -1.8628 L23: -0.0924 REMARK 3 S TENSOR REMARK 3 S11: -0.0866 S12: 0.3894 S13: -0.0972 REMARK 3 S21: 0.0484 S22: -0.2381 S23: -0.9562 REMARK 3 S31: 0.0549 S32: 0.3034 S33: -0.2196 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 34 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.9826 -20.7270 -9.6866 REMARK 3 T TENSOR REMARK 3 T11: 0.3077 T22: 0.1853 REMARK 3 T33: 0.1977 T12: 0.0074 REMARK 3 T13: 0.0398 T23: -0.0417 REMARK 3 L TENSOR REMARK 3 L11: 2.7953 L22: 4.2018 REMARK 3 L33: 5.0957 L12: 2.7900 REMARK 3 L13: 2.1677 L23: 1.1965 REMARK 3 S TENSOR REMARK 3 S11: -0.0085 S12: 0.3095 S13: -0.4627 REMARK 3 S21: -0.1825 S22: 0.0558 S23: -0.2855 REMARK 3 S31: 0.5145 S32: 0.0722 S33: -0.0705 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 52 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.1027 -10.7859 -6.7662 REMARK 3 T TENSOR REMARK 3 T11: 0.1709 T22: 0.1182 REMARK 3 T33: 0.1090 T12: 0.0066 REMARK 3 T13: 0.0321 T23: -0.0128 REMARK 3 L TENSOR REMARK 3 L11: 7.9584 L22: 7.8536 REMARK 3 L33: 7.2990 L12: 5.0197 REMARK 3 L13: -0.3629 L23: -1.0537 REMARK 3 S TENSOR REMARK 3 S11: -0.0458 S12: 0.1674 S13: 0.0796 REMARK 3 S21: -0.0045 S22: 0.0434 S23: 0.0889 REMARK 3 S31: 0.1513 S32: -0.0512 S33: 0.0005 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 69 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.6928 -6.6868 -16.0782 REMARK 3 T TENSOR REMARK 3 T11: 0.1647 T22: 0.1732 REMARK 3 T33: 0.1308 T12: -0.0125 REMARK 3 T13: 0.0215 T23: -0.0217 REMARK 3 L TENSOR REMARK 3 L11: 3.1266 L22: 5.1193 REMARK 3 L33: 5.1000 L12: -1.1106 REMARK 3 L13: 3.6763 L23: -1.8041 REMARK 3 S TENSOR REMARK 3 S11: 0.0768 S12: -0.0365 S13: 0.0084 REMARK 3 S21: -0.0055 S22: -0.0293 S23: 0.2253 REMARK 3 S31: 0.1816 S32: -0.0532 S33: -0.0350 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 99 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.8507 -5.4733 -24.5579 REMARK 3 T TENSOR REMARK 3 T11: 0.3439 T22: 0.5661 REMARK 3 T33: 0.4495 T12: 0.0286 REMARK 3 T13: 0.0188 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 6.7333 L22: 3.8510 REMARK 3 L33: 4.8744 L12: 4.6568 REMARK 3 L13: 5.6080 L23: 4.2362 REMARK 3 S TENSOR REMARK 3 S11: -0.2176 S12: 0.0377 S13: -1.1822 REMARK 3 S21: -0.2231 S22: 1.2599 S23: -1.2386 REMARK 3 S31: 0.3229 S32: 2.0121 S33: -0.9942 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 104 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.2983 -2.6744 -25.8714 REMARK 3 T TENSOR REMARK 3 T11: 0.2705 T22: 0.1747 REMARK 3 T33: 0.2137 T12: -0.0236 REMARK 3 T13: -0.0191 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 6.7799 L22: 3.3521 REMARK 3 L33: 8.0950 L12: -3.0449 REMARK 3 L13: -5.3926 L23: 2.1936 REMARK 3 S TENSOR REMARK 3 S11: 0.2244 S12: 0.0212 S13: 0.2770 REMARK 3 S21: -0.2761 S22: 0.0785 S23: 0.1579 REMARK 3 S31: -0.3822 S32: -0.3365 S33: -0.2684 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 125 THROUGH 134 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.9979 -1.7969 -33.8863 REMARK 3 T TENSOR REMARK 3 T11: 0.3279 T22: 0.2630 REMARK 3 T33: 0.2477 T12: 0.0208 REMARK 3 T13: 0.0520 T23: 0.0677 REMARK 3 L TENSOR REMARK 3 L11: 6.9180 L22: 3.6582 REMARK 3 L33: 4.4893 L12: 4.8016 REMARK 3 L13: 0.0279 L23: -1.1847 REMARK 3 S TENSOR REMARK 3 S11: 0.3566 S12: 0.8104 S13: 0.9183 REMARK 3 S21: -0.0419 S22: 0.1438 S23: 0.2477 REMARK 3 S31: -0.7974 S32: -0.2308 S33: -0.3925 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 135 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.7085 -8.5826 -35.7974 REMARK 3 T TENSOR REMARK 3 T11: 0.2683 T22: 0.3665 REMARK 3 T33: 0.2002 T12: -0.0149 REMARK 3 T13: -0.0180 T23: -0.0382 REMARK 3 L TENSOR REMARK 3 L11: 7.8499 L22: 8.6520 REMARK 3 L33: 8.7245 L12: -5.1388 REMARK 3 L13: -3.4710 L23: 2.5138 REMARK 3 S TENSOR REMARK 3 S11: 0.4155 S12: 0.4455 S13: -0.5712 REMARK 3 S21: -0.1769 S22: -0.5134 S23: 0.3646 REMARK 3 S31: 0.2537 S32: -0.8983 S33: 0.1458 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 15 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.9409 4.1785 3.6353 REMARK 3 T TENSOR REMARK 3 T11: 0.8280 T22: 0.3362 REMARK 3 T33: 1.0312 T12: -0.0744 REMARK 3 T13: -0.1738 T23: 0.1392 REMARK 3 L TENSOR REMARK 3 L11: 2.2145 L22: 8.0442 REMARK 3 L33: 3.8755 L12: 1.2053 REMARK 3 L13: -0.7129 L23: 3.4535 REMARK 3 S TENSOR REMARK 3 S11: 0.0866 S12: 0.3370 S13: -0.8215 REMARK 3 S21: -0.8887 S22: 0.8577 S23: 2.2419 REMARK 3 S31: 0.8146 S32: -0.7547 S33: -0.5949 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND ((RESID 15 THROUGH 21 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 22 THROUGH 27 OR REMARK 3 (RESID 28 THROUGH 30 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 31 THROUGH 34 OR (RESID 35 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 36 THROUGH 40 OR REMARK 3 RESID 42 THROUGH 48 OR RESID 50 THROUGH REMARK 3 51 OR (RESID 52 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 53 THROUGH 69 OR RESID 71 THROUGH 72 OR REMARK 3 RESID 74 THROUGH 78 OR RESID 80 THROUGH REMARK 3 81 OR RESID 83 THROUGH 97 OR RESID 103 REMARK 3 THROUGH 104 OR RESID 106 THROUGH 117 OR REMARK 3 (RESID 118 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB OR NAME CG OR NAME REMARK 3 CD )) OR RESID 119 THROUGH 120 OR (RESID REMARK 3 121 AND (NAME N OR NAME CA OR NAME C OR REMARK 3 NAME O OR NAME CB )) OR (RESID 123 REMARK 3 THROUGH 125 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 126 THROUGH 128 OR RESID 130 OR RESID 132 REMARK 3 OR RESID 134 THROUGH 149 OR (RESID 150 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )))) REMARK 3 SELECTION : (CHAIN 'B' AND ((RESID 15 THROUGH 21 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 22 THROUGH 40 OR REMARK 3 RESID 42 THROUGH 48 OR RESID 50 THROUGH REMARK 3 69 OR RESID 71 THROUGH 72 OR RESID 74 REMARK 3 THROUGH 78 OR RESID 80 THROUGH 81 OR REMARK 3 RESID 83 THROUGH 87 OR (RESID 88 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB OR NAME CG )) OR RESID 89 THROUGH REMARK 3 97 OR RESID 103 THROUGH 104 OR RESID 106 REMARK 3 THROUGH 121 OR RESID 123 THROUGH 128 OR REMARK 3 RESID 130 OR (RESID 132 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 134 THROUGH 150)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7O6S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-APR-21. REMARK 100 THE DEPOSITION ID IS D_1292115153. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 1.02 REMARK 200 DATA SCALING SOFTWARE : XDS 1.02 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43093 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.580 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.69000 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 7.0.047 REMARK 200 STARTING MODEL: 6SCB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 4000, 0.05 M TRIS (PH 7.0), REMARK 280 0.3 M MAGNESIUM CHLORIDE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 106.12267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.06133 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 53.06133 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 106.12267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 9 REMARK 465 SER A 10 REMARK 465 ILE A 11 REMARK 465 SER A 12 REMARK 465 THR A 13 REMARK 465 ALA A 14 REMARK 465 GLN B 151 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 15 CG1 CG2 REMARK 470 ILE A 16 CG1 CG2 CD1 REMARK 470 ASP A 17 CG OD1 OD2 REMARK 470 ILE A 19 CG1 CG2 CD1 REMARK 470 ASN A 20 CG OD1 ND2 REMARK 470 ASN A 29 CG OD1 ND2 REMARK 470 LYS A 49 CE NZ REMARK 470 GLN A 88 CD OE1 NE2 REMARK 470 LYS A 101 CG CD CE NZ REMARK 470 LYS A 124 NZ REMARK 470 GLU A 125 CD OE1 OE2 REMARK 470 GLN A 132 CG CD OE1 NE2 REMARK 470 LYS A 138 CE NZ REMARK 470 SER B 21 OG REMARK 470 ILE B 28 CG1 CG2 CD1 REMARK 470 ASN B 29 CG OD1 ND2 REMARK 470 MET B 35 CG SD CE REMARK 470 ILE B 52 CG1 CG2 CD1 REMARK 470 LYS B 101 CG CD CE NZ REMARK 470 ASN B 102 CG OD1 ND2 REMARK 470 LYS B 118 CE NZ REMARK 470 LEU B 121 CG CD1 CD2 REMARK 470 LYS B 122 CE NZ REMARK 470 LYS B 124 CG CD CE NZ REMARK 470 GLU B 125 CG CD OE1 OE2 REMARK 470 GLN B 132 CD OE1 NE2 REMARK 470 LYS B 138 CE NZ REMARK 470 ILE B 150 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 101 78.85 -103.36 REMARK 500 LYS A 101 -38.48 64.66 REMARK 500 SER B 21 17.66 53.41 REMARK 500 LYS B 101 -42.14 83.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 388 O REMARK 620 2 HOH B 309 O 170.6 REMARK 620 3 HOH B 343 O 97.3 91.9 REMARK 620 4 HOH B 359 O 100.0 82.9 84.1 REMARK 620 5 HOH B 362 O 89.7 81.0 172.4 97.5 REMARK 620 6 HOH B 363 O 81.3 95.5 98.3 177.2 79.9 REMARK 620 N 1 2 3 4 5 DBREF 7O6S A 10 151 UNP P0A2U4 IPGC_SHIFL 10 151 DBREF 7O6S B 10 151 UNP P0A2U4 IPGC_SHIFL 10 151 SEQADV 7O6S GLY A 9 UNP P0A2U4 EXPRESSION TAG SEQADV 7O6S GLY B 9 UNP P0A2U4 EXPRESSION TAG SEQRES 1 A 143 GLY SER ILE SER THR ALA VAL ILE ASP ALA ILE ASN SER SEQRES 2 A 143 GLY ALA THR LEU LYS ASP ILE ASN ALA ILE PRO ASP ASP SEQRES 3 A 143 MET MET ASP ASP ILE TYR SER TYR ALA TYR ASP PHE TYR SEQRES 4 A 143 ASN LYS GLY ARG ILE GLU GLU ALA GLU VAL PHE PHE ARG SEQRES 5 A 143 PHE LEU CYS ILE TYR ASP PHE TYR ASN VAL ASP TYR ILE SEQRES 6 A 143 MET GLY LEU ALA ALA ILE TYR GLN ILE LYS GLU GLN PHE SEQRES 7 A 143 GLN GLN ALA ALA ASP LEU TYR ALA VAL ALA PHE ALA LEU SEQRES 8 A 143 GLY LYS ASN ASP TYR THR PRO VAL PHE HIS THR GLY GLN SEQRES 9 A 143 CYS GLN LEU ARG LEU LYS ALA PRO LEU LYS ALA LYS GLU SEQRES 10 A 143 CYS PHE GLU LEU VAL ILE GLN HIS SER ASN ASP GLU LYS SEQRES 11 A 143 LEU LYS ILE LYS ALA GLN SER TYR LEU ASP ALA ILE GLN SEQRES 1 B 143 GLY SER ILE SER THR ALA VAL ILE ASP ALA ILE ASN SER SEQRES 2 B 143 GLY ALA THR LEU LYS ASP ILE ASN ALA ILE PRO ASP ASP SEQRES 3 B 143 MET MET ASP ASP ILE TYR SER TYR ALA TYR ASP PHE TYR SEQRES 4 B 143 ASN LYS GLY ARG ILE GLU GLU ALA GLU VAL PHE PHE ARG SEQRES 5 B 143 PHE LEU CYS ILE TYR ASP PHE TYR ASN VAL ASP TYR ILE SEQRES 6 B 143 MET GLY LEU ALA ALA ILE TYR GLN ILE LYS GLU GLN PHE SEQRES 7 B 143 GLN GLN ALA ALA ASP LEU TYR ALA VAL ALA PHE ALA LEU SEQRES 8 B 143 GLY LYS ASN ASP TYR THR PRO VAL PHE HIS THR GLY GLN SEQRES 9 B 143 CYS GLN LEU ARG LEU LYS ALA PRO LEU LYS ALA LYS GLU SEQRES 10 B 143 CYS PHE GLU LEU VAL ILE GLN HIS SER ASN ASP GLU LYS SEQRES 11 B 143 LEU LYS ILE LYS ALA GLN SER TYR LEU ASP ALA ILE GLN HET CL A 201 1 HET CL A 202 1 HET DMS A 203 4 HET DMS A 204 4 HET PEG A 205 7 HET CL B 201 1 HET MG B 202 1 HET 45N B 203 16 HET PEG B 204 7 HETNAM CL CHLORIDE ION HETNAM DMS DIMETHYL SULFOXIDE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM MG MAGNESIUM ION HETNAM 45N N-(1,3-BENZODIOXOL-5-YLMETHYL)CYCLOPENTANAMINE FORMUL 3 CL 3(CL 1-) FORMUL 5 DMS 2(C2 H6 O S) FORMUL 7 PEG 2(C4 H10 O3) FORMUL 9 MG MG 2+ FORMUL 10 45N C13 H17 N O2 FORMUL 12 HOH *187(H2 O) HELIX 1 AA1 VAL A 15 GLY A 22 1 8 HELIX 2 AA2 LEU A 25 ASN A 29 5 5 HELIX 3 AA3 PRO A 32 LYS A 49 1 18 HELIX 4 AA4 ARG A 51 ASP A 66 1 16 HELIX 5 AA5 ASN A 69 LYS A 83 1 15 HELIX 6 AA6 GLN A 85 GLY A 100 1 16 HELIX 7 AA7 TYR A 104 LEU A 117 1 14 HELIX 8 AA8 ALA A 119 SER A 134 1 16 HELIX 9 AA9 ASP A 136 ILE A 150 1 15 HELIX 10 AB1 SER B 10 SER B 21 1 12 HELIX 11 AB2 LEU B 25 ASN B 29 5 5 HELIX 12 AB3 PRO B 32 LYS B 49 1 18 HELIX 13 AB4 ARG B 51 ASP B 66 1 16 HELIX 14 AB5 ASN B 69 LYS B 83 1 15 HELIX 15 AB6 GLN B 85 LYS B 101 1 17 HELIX 16 AB7 TYR B 104 LEU B 117 1 14 HELIX 17 AB8 ALA B 119 SER B 134 1 16 HELIX 18 AB9 ASP B 136 ILE B 150 1 15 LINK O HOH A 388 MG MG B 202 6444 1555 2.28 LINK MG MG B 202 O HOH B 309 1555 1555 2.13 LINK MG MG B 202 O HOH B 343 1555 1555 2.05 LINK MG MG B 202 O HOH B 359 1555 1555 2.05 LINK MG MG B 202 O HOH B 362 1555 1555 1.90 LINK MG MG B 202 O HOH B 363 1555 1555 2.03 CRYST1 57.630 57.630 159.184 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017352 0.010018 0.000000 0.00000 SCALE2 0.000000 0.020036 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006282 0.00000