HEADER OXIDOREDUCTASE 12-APR-21 7O6Z TITLE STRUCTURE OF A NEODYMIUM-CONTAINING, XOXF1-TYPE METHANOL DEHYDROGENASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHANOL DEHYDROGENASE (CYTOCHROME C) SUBUNIT 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: XOXF1-TYPE METHANOL DEHYDROGENASE; COMPND 5 EC: 1.1.2.7 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHYLACIDIMICROBIUM SP. AP8; SOURCE 3 ORGANISM_TAXID: 2730359 KEYWDS METHANOL DEHYDROGENASE, NEODYMIUM, LANTHANIDE, XOXF1, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR R.SCHMITZ,A.DIETL,H.OP DEN CAMP,T.BARENDS REVDAT 5 31-JAN-24 7O6Z 1 REMARK REVDAT 4 17-NOV-21 7O6Z 1 JRNL REVDAT 3 10-NOV-21 7O6Z 1 JRNL REVDAT 2 13-OCT-21 7O6Z 1 JRNL REVDAT 1 01-SEP-21 7O6Z 0 JRNL AUTH R.A.SCHMITZ,N.PICONE,H.SINGER,A.DIETL,K.A.SEIFERT,A.POL, JRNL AUTH 2 M.S.M.JETTEN,T.R.M.BARENDS,L.J.DAUMANN,H.J.M.OP DEN CAMP JRNL TITL NEODYMIUM AS METAL COFACTOR FOR BIOLOGICAL METHANOL JRNL TITL 2 OXIDATION: STRUCTURE AND KINETICS OF AN XOXF1-TYPE METHANOL JRNL TITL 3 DEHYDROGENASE. JRNL REF MBIO V. 12 70821 2021 JRNL REFN ESSN 2150-7511 JRNL PMID 34544276 JRNL DOI 10.1128/MBIO.01708-21 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 51183 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.830 REMARK 3 FREE R VALUE TEST SET COUNT : 1958 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.6000 - 5.5400 0.91 3496 143 0.1483 0.1916 REMARK 3 2 5.5400 - 4.4000 0.92 3446 137 0.1296 0.1536 REMARK 3 3 4.4000 - 3.8400 0.94 3493 146 0.1434 0.2231 REMARK 3 4 3.8400 - 3.4900 0.94 3508 129 0.1974 0.2707 REMARK 3 5 3.4900 - 3.2400 0.95 3506 155 0.1883 0.2736 REMARK 3 6 3.2400 - 3.0500 0.96 3553 128 0.2103 0.2672 REMARK 3 7 3.0500 - 2.9000 0.96 3546 145 0.2256 0.2906 REMARK 3 8 2.9000 - 2.7700 0.96 3557 128 0.2312 0.2613 REMARK 3 9 2.7700 - 2.6600 0.94 3444 146 0.2385 0.3038 REMARK 3 10 2.6600 - 2.5700 0.95 3543 138 0.2772 0.3171 REMARK 3 11 2.5700 - 2.4900 0.96 3477 154 0.3003 0.3661 REMARK 3 12 2.4900 - 2.4200 0.96 3593 121 0.3128 0.3930 REMARK 3 13 2.4200 - 2.3600 0.96 3549 138 0.3523 0.3795 REMARK 3 14 2.3600 - 2.3000 0.96 3514 150 0.3812 0.4334 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.362 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.663 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 9504 REMARK 3 ANGLE : 1.141 12942 REMARK 3 CHIRALITY : 0.066 1326 REMARK 3 PLANARITY : 0.008 2860 REMARK 3 DIHEDRAL : 11.297 1284 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 32 THROUGH 801) REMARK 3 ORIGIN FOR THE GROUP (A): -39.2209 -7.3149 23.7954 REMARK 3 T TENSOR REMARK 3 T11: 0.3413 T22: 0.3617 REMARK 3 T33: 0.3444 T12: 0.0263 REMARK 3 T13: 0.0145 T23: -0.0314 REMARK 3 L TENSOR REMARK 3 L11: 1.1105 L22: 0.8287 REMARK 3 L33: 0.9597 L12: 0.2821 REMARK 3 L13: -0.4978 L23: -0.2001 REMARK 3 S TENSOR REMARK 3 S11: 0.0449 S12: -0.2082 S13: 0.0981 REMARK 3 S21: 0.0944 S22: 0.0314 S23: 0.0223 REMARK 3 S31: -0.1376 S32: 0.0951 S33: -0.0765 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 32 THROUGH 801) REMARK 3 ORIGIN FOR THE GROUP (A): -80.3495 -34.1695 26.6406 REMARK 3 T TENSOR REMARK 3 T11: 0.3719 T22: 0.3861 REMARK 3 T33: 0.4150 T12: 0.0282 REMARK 3 T13: 0.0287 T23: 0.0595 REMARK 3 L TENSOR REMARK 3 L11: 1.6764 L22: 0.4076 REMARK 3 L33: 0.8133 L12: -0.1526 REMARK 3 L13: -0.2717 L23: -0.1070 REMARK 3 S TENSOR REMARK 3 S11: -0.0785 S12: -0.2456 S13: -0.2880 REMARK 3 S21: 0.0891 S22: 0.0815 S23: 0.1096 REMARK 3 S31: 0.0770 S32: -0.1821 S33: -0.0069 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7O6Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-APR-21. REMARK 100 THE DEPOSITION ID IS D_1292115254. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-AUG-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99985 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51250 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 48.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.78700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4MAE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01 M NICKEL CHLORIDE, 20% (W/V) PEG REMARK 280 2000 MONOMETHYL ETHER, AND 0.1 M TRIS/HCL PH 8.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.09000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 PHE A 3 REMARK 465 LEU A 4 REMARK 465 LYS A 5 REMARK 465 ARG A 6 REMARK 465 LYS A 7 REMARK 465 LYS A 8 REMARK 465 SER A 9 REMARK 465 LEU A 10 REMARK 465 SER A 11 REMARK 465 ALA A 12 REMARK 465 GLY A 13 REMARK 465 MET A 14 REMARK 465 LEU A 15 REMARK 465 LEU A 16 REMARK 465 ALA A 17 REMARK 465 LEU A 18 REMARK 465 ALA A 19 REMARK 465 VAL A 20 REMARK 465 GLY A 21 REMARK 465 SER A 22 REMARK 465 ALA A 23 REMARK 465 ALA A 24 REMARK 465 SER A 25 REMARK 465 ILE A 26 REMARK 465 PRO A 27 REMARK 465 SER A 28 REMARK 465 ALA A 29 REMARK 465 TYR A 30 REMARK 465 SER A 31 REMARK 465 GLN A 620 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 PHE B 3 REMARK 465 LEU B 4 REMARK 465 LYS B 5 REMARK 465 ARG B 6 REMARK 465 LYS B 7 REMARK 465 LYS B 8 REMARK 465 SER B 9 REMARK 465 LEU B 10 REMARK 465 SER B 11 REMARK 465 ALA B 12 REMARK 465 GLY B 13 REMARK 465 MET B 14 REMARK 465 LEU B 15 REMARK 465 LEU B 16 REMARK 465 ALA B 17 REMARK 465 LEU B 18 REMARK 465 ALA B 19 REMARK 465 VAL B 20 REMARK 465 GLY B 21 REMARK 465 SER B 22 REMARK 465 ALA B 23 REMARK 465 ALA B 24 REMARK 465 SER B 25 REMARK 465 ILE B 26 REMARK 465 PRO B 27 REMARK 465 SER B 28 REMARK 465 ALA B 29 REMARK 465 TYR B 30 REMARK 465 SER B 31 REMARK 465 GLN B 620 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 589 O HOH A 901 2.02 REMARK 500 O HOH A 937 O HOH A 1029 2.12 REMARK 500 O HOH A 998 O HOH A 1002 2.15 REMARK 500 OE1 GLU A 204 O HOH A 902 2.16 REMARK 500 O HOH B 934 O HOH B 935 2.18 REMARK 500 O HOH A 948 O HOH A 961 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS B 481 N - CA - CB ANGL. DEV. = 12.2 DEGREES REMARK 500 LYS B 481 CD - CE - NZ ANGL. DEV. = -20.5 DEGREES REMARK 500 LYS B 481 N - CA - C ANGL. DEV. = -19.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 50 -21.30 70.61 REMARK 500 ARG A 83 -172.00 78.90 REMARK 500 ASP A 138 161.54 80.36 REMARK 500 THR A 139 58.39 -93.60 REMARK 500 ALA A 147 134.28 -172.25 REMARK 500 LYS A 193 -59.92 -29.13 REMARK 500 ASP A 194 27.07 -144.52 REMARK 500 THR A 258 5.32 -66.18 REMARK 500 PRO A 260 -172.87 -64.97 REMARK 500 TRP A 318 43.76 -103.92 REMARK 500 LYS A 400 -174.10 -171.69 REMARK 500 PHE A 417 -60.77 -127.54 REMARK 500 ASP A 434 -153.91 -83.06 REMARK 500 VAL A 474 -61.08 -127.30 REMARK 500 THR A 511 76.35 -101.47 REMARK 500 LYS B 50 -16.76 72.99 REMARK 500 ARG B 83 -179.36 162.59 REMARK 500 PRO B 101 -172.97 -69.54 REMARK 500 PRO B 103 23.46 -76.37 REMARK 500 ASP B 138 176.32 158.64 REMARK 500 ALA B 147 141.88 -173.77 REMARK 500 LYS B 193 -43.68 59.79 REMARK 500 ASP B 194 12.72 -164.22 REMARK 500 PRO B 260 -168.10 -67.06 REMARK 500 GLU B 262 26.89 -140.52 REMARK 500 TRP B 312 -0.83 68.86 REMARK 500 TRP B 318 41.46 -102.31 REMARK 500 LYS B 400 -176.81 -172.64 REMARK 500 PHE B 417 -55.91 -126.26 REMARK 500 ASP B 434 -159.42 -91.26 REMARK 500 VAL B 474 -60.06 -104.48 REMARK 500 ALA B 476 141.94 -171.59 REMARK 500 REMARK 500 REMARK: NULL DBREF 7O6Z A 1 620 PDB 7O6Z 7O6Z 1 620 DBREF 7O6Z B 1 620 PDB 7O6Z 7O6Z 1 620 SEQRES 1 A 620 MET ARG PHE LEU LYS ARG LYS LYS SER LEU SER ALA GLY SEQRES 2 A 620 MET LEU LEU ALA LEU ALA VAL GLY SER ALA ALA SER ILE SEQRES 3 A 620 PRO SER ALA TYR SER ASN ASP ASP VAL LEU LYS LEU THR SEQRES 4 A 620 GLU ASN PRO LYS ASN TRP ALA ALA PRO GLY LYS ASP TYR SEQRES 5 A 620 ALA ASN THR ARG HIS SER PRO LEU LYS GLN ILE ASN THR SEQRES 6 A 620 GLN ASN VAL LYS GLY LEU HIS MET ALA TRP SER PHE SER SEQRES 7 A 620 THR GLY VAL LEU ARG GLY HIS GLU GLY GLN PRO LEU VAL SEQRES 8 A 620 ILE GLY ASP ARG MET TYR VAL VAL THR PRO TYR PRO ASN SEQRES 9 A 620 ILE VAL TRP ALA LEU ASP ILE SER LYS GLY ASN SER TYR SEQRES 10 A 620 GLU VAL LEU TRP LYS TYR ALA PRO ARG GLN ASP ASP LYS SEQRES 11 A 620 ALA VAL SER THR ALA CYS CYS ASP THR VAL ASN ARG GLY SEQRES 12 A 620 ALA SER TYR ALA ASP GLY LYS ILE VAL PHE ASN THR LEU SEQRES 13 A 620 ASP GLY TYR VAL VAL CYS LEU ASP ALA ASN THR GLY LYS SEQRES 14 A 620 GLU LEU TRP LYS THR LYS PHE ALA ASP VAL ASN LYS GLY SEQRES 15 A 620 GLU THR SER THR PRO ALA PRO ILE ILE VAL LYS ASP LYS SEQRES 16 A 620 VAL VAL THR GLY TYR GLY GLY ASP GLU PHE GLY ALA ARG SEQRES 17 A 620 GLY ARG PHE ALA ALA PHE ASP LEU ASN SER GLY LYS MET SEQRES 18 A 620 VAL TRP GLN ALA TYR SER ASN GLY PRO ASP SER ASP VAL SEQRES 19 A 620 LEU LEU GLY PRO ASP PHE ASN SER LYS HIS PRO GLU TYR SEQRES 20 A 620 GLY GLN ALA GLY GLN ASP LEU GLY VAL LYS THR TYR PRO SEQRES 21 A 620 ASP GLU GLU TRP LYS ARG GLY GLY GLY CYS ALA TRP GLY SEQRES 22 A 620 TRP TYR SER TYR ASP PRO LYS LEU ASP LEU ILE TYR TYR SEQRES 23 A 620 ASN THR GLY ASN PRO GLY LEU TRP SER PRO SER TYR ARG SEQRES 24 A 620 THR GLU ALA LYS THR HIS GLU GLU ALA ASN GLU PRO TRP SEQRES 25 A 620 LYS TRP ASP ASN LYS TRP SER MET THR ILE PHE ALA ARG SEQRES 26 A 620 LYS PRO ASP THR GLY GLU ALA VAL TRP GLY TYR GLN MET SEQRES 27 A 620 THR PRO PHE ASP GLN TRP ASP TYR ASP GLY ILE ASN GLU SEQRES 28 A 620 ASP VAL LEU VAL ASP ILE THR VAL ASP GLY SER LYS LYS SEQRES 29 A 620 PRO CYS LEU VAL HIS PHE ASP ARG ASN GLY PHE CYS TYR SEQRES 30 A 620 VAL LEU ASN ARG THR ASP GLY THR ILE ILE ARG ALA ASN SEQRES 31 A 620 LYS PHE VAL THR VAL ASN TRP ALA GLU LYS ILE ASP MET SEQRES 32 A 620 LYS THR GLY ARG PRO VAL LYS VAL LYS GLU HIS SER PRO SEQRES 33 A 620 PHE GLU VAL GLY LYS ALA VAL GLN ALA TYR PRO SER ALA SEQRES 34 A 620 MET GLY GLY LYS ASP GLN GLN PRO VAL ALA VAL ASP PRO SEQRES 35 A 620 LYS GLU PRO ASN VAL PHE TYR ALA PRO THR ASN ASN TRP SEQRES 36 A 620 GLY MET THR LEU GLU PRO MET GLU ARG ALA HIS THR ASN SEQRES 37 A 620 GLN GLY SER VAL TYR VAL PHE ALA ASN VAL LEU MET LYS SEQRES 38 A 620 PRO GLU LYS PRO GLY VAL MET GLY ARG PHE LYS ALA PHE SEQRES 39 A 620 ASP VAL ILE THR GLY LYS ALA ARG TRP ASP ILE PRO GLU SEQRES 40 A 620 ARG PHE PRO THR TRP SER GLY ALA LEU VAL THR ASP GLY SEQRES 41 A 620 GLY LEU ALA PHE TYR GLY THR LEU ASP GLY TRP PHE LYS SEQRES 42 A 620 ALA VAL ASP ARG LYS THR GLY LYS VAL LEU TRP GLN GLN SEQRES 43 A 620 LYS LEU GLY SER GLY ILE ILE GLY ASN PRO ILE SER TYR SEQRES 44 A 620 GLU VAL GLY GLY LYS GLN TYR ILE SER VAL LEU SER GLY SEQRES 45 A 620 ILE GLY GLY TRP ILE GLY LEU PRO VAL THR ALA GLY LEU SEQRES 46 A 620 ASP PRO ALA ASP PRO TYR GLY ALA LEU GLY VAL SER GLY SEQRES 47 A 620 MET ALA ALA GLU ASN GLY PHE TYR ASN ILE PRO MET GLY SEQRES 48 A 620 GLY THR LEU TYR THR PHE CYS VAL GLN SEQRES 1 B 620 MET ARG PHE LEU LYS ARG LYS LYS SER LEU SER ALA GLY SEQRES 2 B 620 MET LEU LEU ALA LEU ALA VAL GLY SER ALA ALA SER ILE SEQRES 3 B 620 PRO SER ALA TYR SER ASN ASP ASP VAL LEU LYS LEU THR SEQRES 4 B 620 GLU ASN PRO LYS ASN TRP ALA ALA PRO GLY LYS ASP TYR SEQRES 5 B 620 ALA ASN THR ARG HIS SER PRO LEU LYS GLN ILE ASN THR SEQRES 6 B 620 GLN ASN VAL LYS GLY LEU HIS MET ALA TRP SER PHE SER SEQRES 7 B 620 THR GLY VAL LEU ARG GLY HIS GLU GLY GLN PRO LEU VAL SEQRES 8 B 620 ILE GLY ASP ARG MET TYR VAL VAL THR PRO TYR PRO ASN SEQRES 9 B 620 ILE VAL TRP ALA LEU ASP ILE SER LYS GLY ASN SER TYR SEQRES 10 B 620 GLU VAL LEU TRP LYS TYR ALA PRO ARG GLN ASP ASP LYS SEQRES 11 B 620 ALA VAL SER THR ALA CYS CYS ASP THR VAL ASN ARG GLY SEQRES 12 B 620 ALA SER TYR ALA ASP GLY LYS ILE VAL PHE ASN THR LEU SEQRES 13 B 620 ASP GLY TYR VAL VAL CYS LEU ASP ALA ASN THR GLY LYS SEQRES 14 B 620 GLU LEU TRP LYS THR LYS PHE ALA ASP VAL ASN LYS GLY SEQRES 15 B 620 GLU THR SER THR PRO ALA PRO ILE ILE VAL LYS ASP LYS SEQRES 16 B 620 VAL VAL THR GLY TYR GLY GLY ASP GLU PHE GLY ALA ARG SEQRES 17 B 620 GLY ARG PHE ALA ALA PHE ASP LEU ASN SER GLY LYS MET SEQRES 18 B 620 VAL TRP GLN ALA TYR SER ASN GLY PRO ASP SER ASP VAL SEQRES 19 B 620 LEU LEU GLY PRO ASP PHE ASN SER LYS HIS PRO GLU TYR SEQRES 20 B 620 GLY GLN ALA GLY GLN ASP LEU GLY VAL LYS THR TYR PRO SEQRES 21 B 620 ASP GLU GLU TRP LYS ARG GLY GLY GLY CYS ALA TRP GLY SEQRES 22 B 620 TRP TYR SER TYR ASP PRO LYS LEU ASP LEU ILE TYR TYR SEQRES 23 B 620 ASN THR GLY ASN PRO GLY LEU TRP SER PRO SER TYR ARG SEQRES 24 B 620 THR GLU ALA LYS THR HIS GLU GLU ALA ASN GLU PRO TRP SEQRES 25 B 620 LYS TRP ASP ASN LYS TRP SER MET THR ILE PHE ALA ARG SEQRES 26 B 620 LYS PRO ASP THR GLY GLU ALA VAL TRP GLY TYR GLN MET SEQRES 27 B 620 THR PRO PHE ASP GLN TRP ASP TYR ASP GLY ILE ASN GLU SEQRES 28 B 620 ASP VAL LEU VAL ASP ILE THR VAL ASP GLY SER LYS LYS SEQRES 29 B 620 PRO CYS LEU VAL HIS PHE ASP ARG ASN GLY PHE CYS TYR SEQRES 30 B 620 VAL LEU ASN ARG THR ASP GLY THR ILE ILE ARG ALA ASN SEQRES 31 B 620 LYS PHE VAL THR VAL ASN TRP ALA GLU LYS ILE ASP MET SEQRES 32 B 620 LYS THR GLY ARG PRO VAL LYS VAL LYS GLU HIS SER PRO SEQRES 33 B 620 PHE GLU VAL GLY LYS ALA VAL GLN ALA TYR PRO SER ALA SEQRES 34 B 620 MET GLY GLY LYS ASP GLN GLN PRO VAL ALA VAL ASP PRO SEQRES 35 B 620 LYS GLU PRO ASN VAL PHE TYR ALA PRO THR ASN ASN TRP SEQRES 36 B 620 GLY MET THR LEU GLU PRO MET GLU ARG ALA HIS THR ASN SEQRES 37 B 620 GLN GLY SER VAL TYR VAL PHE ALA ASN VAL LEU MET LYS SEQRES 38 B 620 PRO GLU LYS PRO GLY VAL MET GLY ARG PHE LYS ALA PHE SEQRES 39 B 620 ASP VAL ILE THR GLY LYS ALA ARG TRP ASP ILE PRO GLU SEQRES 40 B 620 ARG PHE PRO THR TRP SER GLY ALA LEU VAL THR ASP GLY SEQRES 41 B 620 GLY LEU ALA PHE TYR GLY THR LEU ASP GLY TRP PHE LYS SEQRES 42 B 620 ALA VAL ASP ARG LYS THR GLY LYS VAL LEU TRP GLN GLN SEQRES 43 B 620 LYS LEU GLY SER GLY ILE ILE GLY ASN PRO ILE SER TYR SEQRES 44 B 620 GLU VAL GLY GLY LYS GLN TYR ILE SER VAL LEU SER GLY SEQRES 45 B 620 ILE GLY GLY TRP ILE GLY LEU PRO VAL THR ALA GLY LEU SEQRES 46 B 620 ASP PRO ALA ASP PRO TYR GLY ALA LEU GLY VAL SER GLY SEQRES 47 B 620 MET ALA ALA GLU ASN GLY PHE TYR ASN ILE PRO MET GLY SEQRES 48 B 620 GLY THR LEU TYR THR PHE CYS VAL GLN HET ND A 801 1 HET MOH A 802 2 HET PQQ B 701 24 HET ND B 702 1 HET MOH B 703 2 HETNAM ND NEODYMIUM ION HETNAM MOH METHANOL HETNAM PQQ PYRROLOQUINOLINE QUINONE FORMUL 3 ND 2(ND 3+) FORMUL 4 MOH 2(C H4 O) FORMUL 5 PQQ C14 H6 N2 O8 FORMUL 8 HOH *318(H2 O) HELIX 1 AA1 ASN A 32 ASN A 41 1 10 HELIX 2 AA2 ASN A 67 LEU A 71 5 5 HELIX 3 AA3 ASP A 129 THR A 134 1 6 HELIX 4 AA4 ASP A 178 GLY A 182 5 5 HELIX 5 AA5 GLY A 202 GLY A 206 5 5 HELIX 6 AA6 PRO A 230 LEU A 235 1 6 HELIX 7 AA7 HIS A 244 GLY A 248 5 5 HELIX 8 AA8 ASP A 253 THR A 258 1 6 HELIX 9 AA9 GLU A 262 GLY A 267 5 6 HELIX 10 AB1 SER A 295 THR A 300 5 6 HELIX 11 AB2 THR A 304 ASN A 309 1 6 HELIX 12 AB3 LYS A 412 SER A 415 5 4 HELIX 13 AB4 GLY A 574 ALA A 583 1 10 HELIX 14 AB5 GLY A 592 LEU A 594 5 3 HELIX 15 AB6 GLY A 595 ASN A 603 1 9 HELIX 16 AB7 GLY A 604 ILE A 608 5 5 HELIX 17 AB8 ASP B 33 ASN B 41 1 9 HELIX 18 AB9 ASN B 67 LEU B 71 5 5 HELIX 19 AC1 ASP B 129 THR B 134 1 6 HELIX 20 AC2 GLY B 202 GLY B 206 5 5 HELIX 21 AC3 PRO B 230 LEU B 235 1 6 HELIX 22 AC4 HIS B 244 GLY B 248 5 5 HELIX 23 AC5 ASP B 253 THR B 258 1 6 HELIX 24 AC6 GLU B 262 GLY B 267 5 6 HELIX 25 AC7 SER B 295 THR B 300 5 6 HELIX 26 AC8 THR B 304 ASN B 309 1 6 HELIX 27 AC9 LYS B 412 SER B 415 5 4 HELIX 28 AD1 GLY B 574 ALA B 583 1 10 HELIX 29 AD2 TYR B 591 VAL B 596 1 6 HELIX 30 AD3 VAL B 596 ASN B 603 1 8 HELIX 31 AD4 GLY B 604 ILE B 608 5 5 SHEET 1 AA1 5 HIS A 57 SER A 58 0 SHEET 2 AA1 5 LEU A 516 THR A 518 1 O VAL A 517 N SER A 58 SHEET 3 AA1 5 LEU A 522 GLY A 526 -1 O PHE A 524 N LEU A 516 SHEET 4 AA1 5 TRP A 531 ASP A 536 -1 O LYS A 533 N TYR A 525 SHEET 5 AA1 5 VAL A 542 LYS A 547 -1 O GLN A 546 N PHE A 532 SHEET 1 AA2 4 HIS A 72 SER A 78 0 SHEET 2 AA2 4 THR A 613 CYS A 618 -1 O THR A 616 N ALA A 74 SHEET 3 AA2 4 LYS A 564 SER A 571 -1 N ILE A 567 O PHE A 617 SHEET 4 AA2 4 ILE A 557 VAL A 561 -1 N TYR A 559 O TYR A 566 SHEET 1 AA3 4 LEU A 90 ILE A 92 0 SHEET 2 AA3 4 ARG A 95 VAL A 99 -1 O ARG A 95 N ILE A 92 SHEET 3 AA3 4 VAL A 106 ASP A 110 -1 O LEU A 109 N MET A 96 SHEET 4 AA3 4 GLU A 118 TYR A 123 -1 O GLU A 118 N ASP A 110 SHEET 1 AA4 4 SER A 145 ALA A 147 0 SHEET 2 AA4 4 LYS A 150 ASN A 154 -1 O VAL A 152 N SER A 145 SHEET 3 AA4 4 TYR A 159 ASP A 164 -1 O LEU A 163 N ILE A 151 SHEET 4 AA4 4 GLU A 170 LYS A 175 -1 O THR A 174 N VAL A 160 SHEET 1 AA5 4 ILE A 190 ILE A 191 0 SHEET 2 AA5 4 LYS A 195 THR A 198 -1 O VAL A 197 N ILE A 190 SHEET 3 AA5 4 ARG A 210 ASP A 215 -1 O PHE A 214 N VAL A 196 SHEET 4 AA5 4 MET A 221 TYR A 226 -1 O ALA A 225 N PHE A 211 SHEET 1 AA6 4 SER A 276 ASP A 278 0 SHEET 2 AA6 4 LEU A 283 ASN A 287 -1 O TYR A 285 N SER A 276 SHEET 3 AA6 4 THR A 321 ARG A 325 -1 O PHE A 323 N TYR A 286 SHEET 4 AA6 4 ALA A 332 GLN A 337 -1 O VAL A 333 N ALA A 324 SHEET 1 AA7 4 VAL A 353 VAL A 359 0 SHEET 2 AA7 4 SER A 362 PHE A 370 -1 O VAL A 368 N VAL A 353 SHEET 3 AA7 4 PHE A 375 ASN A 380 -1 O TYR A 377 N HIS A 369 SHEET 4 AA7 4 ILE A 386 LYS A 391 -1 O ASN A 390 N CYS A 376 SHEET 1 AA8 2 ALA A 398 ILE A 401 0 SHEET 2 AA8 2 PRO A 408 LYS A 410 -1 O VAL A 409 N GLU A 399 SHEET 1 AA9 3 VAL A 423 ALA A 425 0 SHEET 2 AA9 3 TRP A 455 PRO A 461 -1 O MET A 457 N ALA A 425 SHEET 3 AA9 3 ALA A 476 ASN A 477 -1 O ASN A 477 N GLU A 460 SHEET 1 AB1 3 VAL A 423 ALA A 425 0 SHEET 2 AB1 3 TRP A 455 PRO A 461 -1 O MET A 457 N ALA A 425 SHEET 3 AB1 3 MET A 480 PRO A 482 -1 O LYS A 481 N GLY A 456 SHEET 1 AB2 4 ALA A 439 VAL A 440 0 SHEET 2 AB2 4 VAL A 447 ASN A 453 -1 O TYR A 449 N ALA A 439 SHEET 3 AB2 4 GLY A 489 ASP A 495 -1 O PHE A 494 N PHE A 448 SHEET 4 AB2 4 ALA A 501 GLU A 507 -1 O ARG A 502 N ALA A 493 SHEET 1 AB3 5 HIS B 57 SER B 58 0 SHEET 2 AB3 5 LEU B 516 THR B 518 1 O VAL B 517 N SER B 58 SHEET 3 AB3 5 LEU B 522 GLY B 526 -1 O PHE B 524 N LEU B 516 SHEET 4 AB3 5 TRP B 531 ASP B 536 -1 O LYS B 533 N TYR B 525 SHEET 5 AB3 5 VAL B 542 LYS B 547 -1 O LEU B 543 N ALA B 534 SHEET 1 AB4 4 HIS B 72 SER B 78 0 SHEET 2 AB4 4 THR B 613 CYS B 618 -1 O THR B 616 N ALA B 74 SHEET 3 AB4 4 LYS B 564 SER B 571 -1 N VAL B 569 O TYR B 615 SHEET 4 AB4 4 ILE B 557 VAL B 561 -1 N ILE B 557 O SER B 568 SHEET 1 AB5 4 LEU B 90 ILE B 92 0 SHEET 2 AB5 4 ARG B 95 VAL B 99 -1 O ARG B 95 N ILE B 92 SHEET 3 AB5 4 VAL B 106 ASP B 110 -1 O LEU B 109 N MET B 96 SHEET 4 AB5 4 GLU B 118 TYR B 123 -1 O GLU B 118 N ASP B 110 SHEET 1 AB6 4 SER B 145 ALA B 147 0 SHEET 2 AB6 4 LYS B 150 ASN B 154 -1 O VAL B 152 N SER B 145 SHEET 3 AB6 4 TYR B 159 ASP B 164 -1 O LEU B 163 N ILE B 151 SHEET 4 AB6 4 GLU B 170 LYS B 175 -1 O TRP B 172 N CYS B 162 SHEET 1 AB7 4 ILE B 190 VAL B 192 0 SHEET 2 AB7 4 LYS B 195 THR B 198 -1 O LYS B 195 N VAL B 192 SHEET 3 AB7 4 ARG B 210 ASP B 215 -1 O PHE B 214 N VAL B 196 SHEET 4 AB7 4 MET B 221 TYR B 226 -1 O VAL B 222 N ALA B 213 SHEET 1 AB8 4 SER B 276 ASP B 278 0 SHEET 2 AB8 4 LEU B 283 ASN B 287 -1 O TYR B 285 N SER B 276 SHEET 3 AB8 4 THR B 321 ARG B 325 -1 O ARG B 325 N ILE B 284 SHEET 4 AB8 4 ALA B 332 GLN B 337 -1 O VAL B 333 N ALA B 324 SHEET 1 AB9 4 VAL B 353 VAL B 359 0 SHEET 2 AB9 4 SER B 362 PHE B 370 -1 O VAL B 368 N VAL B 353 SHEET 3 AB9 4 PHE B 375 ASN B 380 -1 O TYR B 377 N HIS B 369 SHEET 4 AB9 4 ILE B 386 LYS B 391 -1 O ASN B 390 N CYS B 376 SHEET 1 AC1 2 ALA B 398 ILE B 401 0 SHEET 2 AC1 2 PRO B 408 LYS B 410 -1 O VAL B 409 N GLU B 399 SHEET 1 AC2 3 VAL B 423 ALA B 425 0 SHEET 2 AC2 3 TRP B 455 PRO B 461 -1 O LEU B 459 N VAL B 423 SHEET 3 AC2 3 ALA B 476 PRO B 482 -1 O ASN B 477 N GLU B 460 SHEET 1 AC3 4 ALA B 439 VAL B 440 0 SHEET 2 AC3 4 VAL B 447 ASN B 453 -1 O TYR B 449 N ALA B 439 SHEET 3 AC3 4 GLY B 489 ASP B 495 -1 O PHE B 494 N PHE B 448 SHEET 4 AC3 4 ALA B 501 GLU B 507 -1 O ARG B 502 N ALA B 493 SSBOND 1 CYS A 136 CYS A 137 1555 1555 2.54 SSBOND 2 CYS B 136 CYS B 137 1555 1555 2.07 CISPEP 1 TYR A 102 PRO A 103 0 1.49 CISPEP 2 LYS A 317 TRP A 318 0 3.04 CISPEP 3 TYR A 426 PRO A 427 0 -0.30 CISPEP 4 TYR B 102 PRO B 103 0 2.43 CISPEP 5 LYS B 317 TRP B 318 0 1.83 CISPEP 6 TYR B 426 PRO B 427 0 -0.15 CRYST1 89.870 70.180 97.230 90.00 91.39 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011127 0.000000 0.000271 0.00000 SCALE2 0.000000 0.014249 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010288 0.00000