HEADER OXIDOREDUCTASE 15-APR-21 7O9D TITLE PEROXIDE-BOUND DICO-SULERYTHRIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SULERYTHRIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFURISPHAERA TOKODAII (STRAIN DSM 16993 / JCM SOURCE 3 10545 / NBRC 100140 / 7); SOURCE 4 ORGANISM_COMMON: SULFOLOBUS TOKODAII; SOURCE 5 ORGANISM_TAXID: 273063; SOURCE 6 STRAIN: DSM 16993 / JCM 10545 / NBRC 100140 / 7; SOURCE 7 GENE: ST2370, STK_23700; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI B; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 37762 KEYWDS SULERYTHRIN, HYDROGEN PEROXIDE, MOLECULAR OXYGEN, BI-METALLIC BINDING KEYWDS 2 SITE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.-H.JEOUNG,H.DOBBEK REVDAT 3 31-JAN-24 7O9D 1 REMARK REVDAT 2 15-DEC-21 7O9D 1 JRNL REVDAT 1 01-DEC-21 7O9D 0 JRNL AUTH J.H.JEOUNG,S.RUNGER,M.HAUMANN,B.NEUMANN,F.KLEMKE,V.DAVIS, JRNL AUTH 2 A.FISCHER,H.DAU,U.WOLLENBERGER,H.DOBBEK JRNL TITL BIMETALLIC MN, FE, CO, AND NI SITES IN A FOUR-HELIX BUNDLE JRNL TITL 2 PROTEIN: METAL BINDING, STRUCTURE, AND PEROXIDE ACTIVATION. JRNL REF INORG.CHEM. V. 60 17498 2021 JRNL REFN ISSN 0020-1669 JRNL PMID 34757735 JRNL DOI 10.1021/ACS.INORGCHEM.1C01919 REMARK 2 REMARK 2 RESOLUTION. 1.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 74918 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.136 REMARK 3 R VALUE (WORKING SET) : 0.136 REMARK 3 FREE R VALUE : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.100 REMARK 3 FREE R VALUE TEST SET COUNT : 795 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.28 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5523 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2241 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 221 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.32000 REMARK 3 B22 (A**2) : -0.32000 REMARK 3 B33 (A**2) : 1.04000 REMARK 3 B12 (A**2) : -0.16000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.038 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.041 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.030 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.650 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2368 ; 0.014 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2214 ; 0.005 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3194 ; 1.885 ; 1.655 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5124 ; 1.720 ; 1.584 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 302 ; 4.392 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 140 ;36.567 ;22.500 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 424 ;13.195 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;15.406 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 297 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2734 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 564 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1157 ; 1.769 ; 1.225 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1156 ; 1.757 ; 5.460 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1449 ; 2.102 ; 4.668 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1450 ; 2.102 ; 7.579 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1211 ; 3.297 ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1212 ; 3.297 ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1737 ; 3.402 ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2853 ; 3.194 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2814 ; 3.136 ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2344 ; 4.355 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 143 REMARK 3 ORIGIN FOR THE GROUP (A): 6.637 66.457 30.770 REMARK 3 T TENSOR REMARK 3 T11: 0.0157 T22: 0.0025 REMARK 3 T33: 0.0477 T12: -0.0001 REMARK 3 T13: 0.0015 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.7276 L22: 0.5709 REMARK 3 L33: 0.6252 L12: -0.2090 REMARK 3 L13: 0.1760 L23: -0.0528 REMARK 3 S TENSOR REMARK 3 S11: 0.0080 S12: -0.0116 S13: -0.1779 REMARK 3 S21: -0.0160 S22: 0.0071 S23: 0.0132 REMARK 3 S31: 0.0700 S32: -0.0278 S33: -0.0152 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -1 B 141 REMARK 3 ORIGIN FOR THE GROUP (A): 7.162 66.479 19.988 REMARK 3 T TENSOR REMARK 3 T11: 0.0468 T22: 0.0394 REMARK 3 T33: 0.0339 T12: -0.0031 REMARK 3 T13: 0.0081 T23: -0.0344 REMARK 3 L TENSOR REMARK 3 L11: 0.7465 L22: 0.7134 REMARK 3 L33: 0.9131 L12: -0.2247 REMARK 3 L13: 0.0422 L23: 0.1967 REMARK 3 S TENSOR REMARK 3 S11: 0.0130 S12: 0.1627 S13: -0.1376 REMARK 3 S21: -0.1252 S22: -0.0015 S23: -0.0217 REMARK 3 S31: 0.0808 S32: 0.0437 S33: -0.0115 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 7O9D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-APR-21. REMARK 100 THE DEPOSITION ID IS D_1292115328. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 99787 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.170 REMARK 200 RESOLUTION RANGE LOW (A) : 38.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.11 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.17 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.21 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1J30 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS (PH 5.5) AND 20-25% REMARK 280 (W/V) PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 49.45600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 49.45600 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 49.45600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -134.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 THR A 144 REMARK 465 GLY B 142 REMARK 465 GLY B 143 REMARK 465 THR B 144 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 359 O HOH A 393 1.59 REMARK 500 OE2 GLU B 95 O HOH B 301 1.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 58 CB - CG - CD1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG A 65 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 108 NE - CZ - NH2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG B 33 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 PHE B 58 CB - CG - CD1 ANGL. DEV. = 4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 39 72.39 -117.26 REMARK 500 GLN A 98 -57.04 -128.48 REMARK 500 TYR B 39 71.17 -117.69 REMARK 500 GLN B 98 -57.25 -131.28 REMARK 500 PHE B 112 68.50 -115.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 201 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 20 OE1 REMARK 620 2 GLU A 20 OE2 58.2 REMARK 620 3 GLU A 53 OE1 150.1 92.2 REMARK 620 4 HIS A 56 ND1 92.6 103.1 90.3 REMARK 620 5 GLU B 126 OE2 83.7 138.5 125.7 93.9 REMARK 620 6 PEO B 204 O1 94.7 81.2 83.5 172.7 86.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B 201 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 53 OE2 REMARK 620 2 GLU B 92 OE1 146.8 REMARK 620 3 GLU B 92 OE2 89.1 60.4 REMARK 620 4 GLU B 126 OE1 122.3 88.2 148.4 REMARK 620 5 HIS B 129 ND1 90.5 104.6 96.1 87.7 REMARK 620 6 PEO B 204 O2 84.7 83.1 90.8 88.9 171.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 202 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 92 OE1 REMARK 620 2 GLU A 92 OE2 59.8 REMARK 620 3 GLU A 126 OE2 147.4 87.9 REMARK 620 4 HIS A 129 ND1 97.8 104.3 85.2 REMARK 620 5 PEO A 203 O1 90.0 83.8 90.9 170.8 REMARK 620 6 GLU B 53 OE1 90.7 147.9 121.8 91.2 83.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B 202 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 126 OE1 REMARK 620 2 PEO A 203 O2 85.8 REMARK 620 3 GLU B 20 OE1 138.5 80.6 REMARK 620 4 GLU B 20 OE2 82.5 93.3 59.6 REMARK 620 5 GLU B 53 OE2 125.7 84.9 92.0 151.4 REMARK 620 6 HIS B 56 ND1 94.5 173.4 103.2 93.3 89.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B 203 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B -1 N REMARK 620 2 HOH A 304 O 136.5 REMARK 620 3 HIS B 0 N 77.6 93.2 REMARK 620 4 HIS B 0 ND1 137.4 85.1 94.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B 203 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B -1 N REMARK 620 2 HIS B 0 ND1 126.7 REMARK 620 N 1 DBREF 7O9D A 1 144 UNP F9VPE5 F9VPE5_SULTO 1 144 DBREF 7O9D B 1 144 UNP F9VPE5 F9VPE5_SULTO 1 144 SEQADV 7O9D GLY A -1 UNP F9VPE5 EXPRESSION TAG SEQADV 7O9D HIS A 0 UNP F9VPE5 EXPRESSION TAG SEQADV 7O9D GLY B -1 UNP F9VPE5 EXPRESSION TAG SEQADV 7O9D HIS B 0 UNP F9VPE5 EXPRESSION TAG SEQRES 1 A 146 GLY HIS MET LYS ASP LEU LYS GLY THR LYS THR ALA GLU SEQRES 2 A 146 ASN LEU LYS GLN GLY PHE ILE GLY GLU SER MET ALA ASN SEQRES 3 A 146 ARG ARG TYR LEU TYR PHE ALA LYS ARG ALA ASP GLU GLU SEQRES 4 A 146 GLY TYR PRO GLU ILE ALA GLY LEU LEU ARG SER ILE ALA SEQRES 5 A 146 GLU GLY GLU THR ALA HIS ALA PHE GLY HIS LEU ASP PHE SEQRES 6 A 146 ILE ARG GLN GLY GLY LEU THR ASP PRO ALA THR ASP LYS SEQRES 7 A 146 PRO ILE GLY THR LEU GLU GLN MET ILE GLU SER ALA ILE SEQRES 8 A 146 ALA GLY GLU THR TYR GLU TRP THR GLN MET TYR PRO GLY SEQRES 9 A 146 PHE ALA LYS VAL ALA ARG GLU GLU GLY PHE PRO GLU VAL SEQRES 10 A 146 ALA GLU TRP PHE GLU THR LEU ALA ARG ALA GLU LYS SER SEQRES 11 A 146 HIS ALA GLU LYS PHE GLN ASN VAL LEU LYS GLN LEU LYS SEQRES 12 A 146 GLY GLY THR SEQRES 1 B 146 GLY HIS MET LYS ASP LEU LYS GLY THR LYS THR ALA GLU SEQRES 2 B 146 ASN LEU LYS GLN GLY PHE ILE GLY GLU SER MET ALA ASN SEQRES 3 B 146 ARG ARG TYR LEU TYR PHE ALA LYS ARG ALA ASP GLU GLU SEQRES 4 B 146 GLY TYR PRO GLU ILE ALA GLY LEU LEU ARG SER ILE ALA SEQRES 5 B 146 GLU GLY GLU THR ALA HIS ALA PHE GLY HIS LEU ASP PHE SEQRES 6 B 146 ILE ARG GLN GLY GLY LEU THR ASP PRO ALA THR ASP LYS SEQRES 7 B 146 PRO ILE GLY THR LEU GLU GLN MET ILE GLU SER ALA ILE SEQRES 8 B 146 ALA GLY GLU THR TYR GLU TRP THR GLN MET TYR PRO GLY SEQRES 9 B 146 PHE ALA LYS VAL ALA ARG GLU GLU GLY PHE PRO GLU VAL SEQRES 10 B 146 ALA GLU TRP PHE GLU THR LEU ALA ARG ALA GLU LYS SER SEQRES 11 B 146 HIS ALA GLU LYS PHE GLN ASN VAL LEU LYS GLN LEU LYS SEQRES 12 B 146 GLY GLY THR HET CO A 201 1 HET CO A 202 1 HET PEO A 203 2 HET CL A 204 1 HET CO B 201 1 HET CO B 202 1 HET CO B 203 2 HET PEO B 204 2 HET CL B 205 1 HETNAM CO COBALT (II) ION HETNAM PEO HYDROGEN PEROXIDE HETNAM CL CHLORIDE ION FORMUL 3 CO 5(CO 2+) FORMUL 5 PEO 2(H2 O2) FORMUL 6 CL 2(CL 1-) FORMUL 12 HOH *221(H2 O) HELIX 1 AA1 THR A 7 GLY A 38 1 32 HELIX 2 AA2 TYR A 39 GLY A 67 1 29 HELIX 3 AA3 THR A 80 GLN A 98 1 19 HELIX 4 AA4 GLN A 98 GLU A 110 1 13 HELIX 5 AA5 PHE A 112 GLY A 143 1 32 HELIX 6 AA6 THR B 7 GLY B 38 1 32 HELIX 7 AA7 TYR B 39 GLY B 67 1 29 HELIX 8 AA8 THR B 80 GLN B 98 1 19 HELIX 9 AA9 GLN B 98 GLU B 110 1 13 HELIX 10 AB1 PHE B 112 LYS B 141 1 30 LINK OE1 GLU A 20 CO CO A 201 1555 1555 2.32 LINK OE2 GLU A 20 CO CO A 201 1555 1555 2.12 LINK OE1 GLU A 53 CO CO A 201 1555 1555 2.04 LINK OE2 GLU A 53 CO CO B 201 1555 1555 2.00 LINK ND1 HIS A 56 CO CO A 201 1555 1555 2.17 LINK OE1 GLU A 92 CO CO A 202 1555 1555 2.20 LINK OE2 GLU A 92 CO CO A 202 1555 1555 2.18 LINK OE2 GLU A 126 CO CO A 202 1555 1555 2.01 LINK OE1 GLU A 126 CO CO B 202 1555 1555 1.99 LINK ND1 HIS A 129 CO CO A 202 1555 1555 2.14 LINK CO CO A 201 OE2 GLU B 126 1555 1555 1.93 LINK CO CO A 201 O1 PEO B 204 1555 1555 2.31 LINK CO CO A 202 O1 PEO A 203 1555 1555 2.24 LINK CO CO A 202 OE1 GLU B 53 1555 1555 2.01 LINK O2 PEO A 203 CO CO B 202 1555 1555 2.24 LINK N GLY B -1 CO A CO B 203 1555 1555 2.73 LINK N GLY B -1 CO B CO B 203 1555 1555 2.36 LINK O HOH A 304 CO A CO B 203 1555 1555 2.01 LINK N HIS B 0 CO A CO B 203 1555 1555 2.02 LINK ND1 HIS B 0 CO A CO B 203 1555 1555 2.06 LINK ND1 HIS B 0 CO B CO B 203 1555 1555 2.64 LINK OE1 GLU B 20 CO CO B 202 1555 1555 2.06 LINK OE2 GLU B 20 CO CO B 202 1555 1555 2.29 LINK OE2 GLU B 53 CO CO B 202 1555 1555 2.02 LINK ND1 HIS B 56 CO CO B 202 1555 1555 2.15 LINK OE1 GLU B 92 CO CO B 201 1555 1555 2.16 LINK OE2 GLU B 92 CO CO B 201 1555 1555 2.22 LINK OE1 GLU B 126 CO CO B 201 1555 1555 2.03 LINK ND1 HIS B 129 CO CO B 201 1555 1555 2.12 LINK CO CO B 201 O2 PEO B 204 1555 1555 2.20 CRYST1 72.539 72.539 98.912 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013786 0.007959 0.000000 0.00000 SCALE2 0.000000 0.015918 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010110 0.00000