HEADER HYDROLASE 16-APR-21 7O9J TITLE CRYSTAL STRUCTURE OF DYP-TYPE PEROXIDASE FROM DICTYOSTELIUM DISCOIDEUM TITLE 2 IN COMPLEX WITH AN ACTIVATED FORM OF OXYGEN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DYPA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DICTYOSTELIUM DISCOIDEUM; SOURCE 3 ORGANISM_COMMON: SLIME MOLD; SOURCE 4 ORGANISM_TAXID: 44689; SOURCE 5 GENE: DDB0168077, DDB0217308; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DYE DECOLORIZING-TYPE PEROXIDASE, DICTYOSTELIUM DISCOIDEUM, B-TYPE KEYWDS 2 DYP, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.RAI,R.FEDOROV,D.J.MANSTEIN REVDAT 2 31-JAN-24 7O9J 1 REMARK REVDAT 1 14-JUL-21 7O9J 0 JRNL AUTH A.RAI,J.P.KLARE,P.Y.A.REINKE,F.ENGLMAIER,J.FOHRER,R.FEDOROV, JRNL AUTH 2 M.H.TAFT,I.CHIZHOV,U.CURTH,O.PLETTENBURG,D.J.MANSTEIN JRNL TITL STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF A JRNL TITL 2 DYE-DECOLORIZING PEROXIDASE FROM DICTYOSTELIUM DISCOIDEUM . JRNL REF INT J MOL SCI V. 22 2021 JRNL REFN ESSN 1422-0067 JRNL PMID 34200865 JRNL DOI 10.3390/IJMS22126265 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 105721 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.165 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5281 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.2500 - 5.2800 1.00 3627 189 0.1693 0.1631 REMARK 3 2 5.2800 - 4.1900 1.00 3465 193 0.1191 0.1259 REMARK 3 3 4.1900 - 3.6600 1.00 3403 199 0.1215 0.1285 REMARK 3 4 3.6600 - 3.3300 1.00 3393 179 0.1255 0.1504 REMARK 3 5 3.3300 - 3.0900 1.00 3383 186 0.1522 0.1709 REMARK 3 6 3.0900 - 2.9100 1.00 3352 188 0.1506 0.1748 REMARK 3 7 2.9100 - 2.7600 1.00 3384 165 0.1576 0.2058 REMARK 3 8 2.7600 - 2.6400 1.00 3365 168 0.1582 0.1864 REMARK 3 9 2.6400 - 2.5400 1.00 3370 165 0.1508 0.1711 REMARK 3 10 2.5400 - 2.4500 1.00 3331 185 0.1508 0.1949 REMARK 3 11 2.4500 - 2.3800 1.00 3349 165 0.1468 0.1546 REMARK 3 12 2.3800 - 2.3100 1.00 3327 177 0.1410 0.1707 REMARK 3 13 2.3100 - 2.2500 1.00 3336 172 0.1359 0.1839 REMARK 3 14 2.2500 - 2.1900 1.00 3313 199 0.1365 0.1678 REMARK 3 15 2.1900 - 2.1400 1.00 3341 166 0.1369 0.1531 REMARK 3 16 2.1400 - 2.1000 1.00 3336 169 0.1408 0.1700 REMARK 3 17 2.1000 - 2.0500 1.00 3296 186 0.1407 0.1682 REMARK 3 18 2.0500 - 2.0200 1.00 3318 176 0.1447 0.1511 REMARK 3 19 2.0200 - 1.9800 1.00 3338 163 0.1437 0.1724 REMARK 3 20 1.9800 - 1.9500 1.00 3305 169 0.1471 0.1881 REMARK 3 21 1.9500 - 1.9100 1.00 3310 173 0.1579 0.1754 REMARK 3 22 1.9100 - 1.8900 1.00 3341 171 0.1579 0.2028 REMARK 3 23 1.8900 - 1.8600 1.00 3298 175 0.1687 0.1864 REMARK 3 24 1.8600 - 1.8300 1.00 3306 160 0.1809 0.2146 REMARK 3 25 1.8300 - 1.8100 1.00 3323 172 0.1823 0.2177 REMARK 3 26 1.8100 - 1.7800 1.00 3316 163 0.1831 0.2089 REMARK 3 27 1.7800 - 1.7600 1.00 3306 181 0.1988 0.2261 REMARK 3 28 1.7600 - 1.7400 1.00 3279 172 0.1987 0.1973 REMARK 3 29 1.7400 - 1.7200 1.00 3297 189 0.2097 0.2317 REMARK 3 30 1.7200 - 1.7000 1.00 3332 166 0.2173 0.2257 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.118 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.858 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.43 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5175 REMARK 3 ANGLE : 1.098 7008 REMARK 3 CHIRALITY : 0.076 757 REMARK 3 PLANARITY : 0.005 900 REMARK 3 DIHEDRAL : 16.666 726 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 9.1459 26.4107 13.8529 REMARK 3 T TENSOR REMARK 3 T11: 0.1853 T22: 0.1734 REMARK 3 T33: 0.1630 T12: 0.0007 REMARK 3 T13: 0.0029 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 0.6976 L22: 0.3227 REMARK 3 L33: 0.3407 L12: -0.0597 REMARK 3 L13: 0.2302 L23: -0.1000 REMARK 3 S TENSOR REMARK 3 S11: 0.0248 S12: -0.0343 S13: 0.0152 REMARK 3 S21: 0.0326 S22: 0.0142 S23: 0.0280 REMARK 3 S31: -0.0211 S32: -0.0139 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7O9J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-APR-21. REMARK 100 THE DEPOSITION ID IS D_1292115266. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91985 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SADABS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 105810 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 47.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 26.60 REMARK 200 R MERGE (I) : 0.03140 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.4600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 25.44 REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.850 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2IIZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4 M SODIUM MALONATE PH 7.0, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.78000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 70.51500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 70.51500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 23.89000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 70.51500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 70.51500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 71.67000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 70.51500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 70.51500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 23.89000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 70.51500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.51500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 71.67000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 47.78000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -79.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 786 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 810 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 LEU A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 GLY B -4 REMARK 465 PRO B -3 REMARK 465 LEU B -2 REMARK 465 GLY B -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 599 O HOH A 636 2.10 REMARK 500 O HOH B 621 O HOH B 752 2.11 REMARK 500 OD1 ASP B 69 O HOH B 501 2.12 REMARK 500 O HOH A 516 O HOH A 528 2.16 REMARK 500 OD1 ASP A 215 O HOH A 501 2.18 REMARK 500 O ARG B 214 O HOH B 502 2.19 REMARK 500 O HOH B 505 O HOH B 735 2.19 REMARK 500 O HOH B 673 O HOH B 690 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 95 57.89 -157.58 REMARK 500 GLN A 181 114.73 -160.05 REMARK 500 ASN A 186 78.16 -107.42 REMARK 500 SER B 95 58.05 -156.38 REMARK 500 GLN B 181 113.24 -160.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 808 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH B 809 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH B 810 DISTANCE = 6.32 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 404 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 13 OH REMARK 620 2 HOH A 584 O 121.0 REMARK 620 3 HOH B 725 O 80.0 139.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 222 NE2 REMARK 620 2 HEM A 401 NA 91.1 REMARK 620 3 HEM A 401 NB 88.2 88.1 REMARK 620 4 HEM A 401 NC 91.4 175.6 88.5 REMARK 620 5 HEM A 401 ND 98.0 91.7 173.7 91.4 REMARK 620 6 OXY A 405 O2 167.6 84.4 80.1 92.3 93.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 404 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 550 O REMARK 620 2 HOH B 629 O 116.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 402 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 222 NE2 REMARK 620 2 HEM B 402 NA 92.2 REMARK 620 3 HEM B 402 NB 88.8 86.5 REMARK 620 4 HEM B 402 NC 90.4 175.5 89.9 REMARK 620 5 HEM B 402 ND 97.4 90.2 173.1 93.1 REMARK 620 6 OXY B 405 O1 166.6 83.1 78.4 93.5 95.2 REMARK 620 N 1 2 3 4 5 DBREF 7O9J A 1 306 UNP Q556V8 Q556V8_DICDI 1 306 DBREF 7O9J B 1 306 UNP Q556V8 Q556V8_DICDI 1 306 SEQADV 7O9J GLY A -4 UNP Q556V8 EXPRESSION TAG SEQADV 7O9J PRO A -3 UNP Q556V8 EXPRESSION TAG SEQADV 7O9J LEU A -2 UNP Q556V8 EXPRESSION TAG SEQADV 7O9J GLY A -1 UNP Q556V8 EXPRESSION TAG SEQADV 7O9J SER A 0 UNP Q556V8 EXPRESSION TAG SEQADV 7O9J GLY B -4 UNP Q556V8 EXPRESSION TAG SEQADV 7O9J PRO B -3 UNP Q556V8 EXPRESSION TAG SEQADV 7O9J LEU B -2 UNP Q556V8 EXPRESSION TAG SEQADV 7O9J GLY B -1 UNP Q556V8 EXPRESSION TAG SEQADV 7O9J SER B 0 UNP Q556V8 EXPRESSION TAG SEQRES 1 A 311 GLY PRO LEU GLY SER MET ALA GLN SER THR VAL LEU PRO SEQRES 2 A 311 MET HIS CYS LEU TYR GLY ILE PHE LEU GLU GLY ASN LEU SEQRES 3 A 311 LYS ILE GLN LYS ASN ASP GLN GLU GLY LEU LYS LYS PHE SEQRES 4 A 311 LYS ASP ASN ILE LYS LYS PHE THR LEU GLU LEU ASP GLU SEQRES 5 A 311 ILE ASP LYS ILE SER PRO GLN SER ARG ILE GLY GLY ALA SEQRES 6 A 311 ILE CYS PHE SER SER ASP ILE TRP ASP THR VAL THR LYS SEQRES 7 A 311 LYS ILE SER LYS PRO LYS GLU LEU LYS SER VAL ASN THR SEQRES 8 A 311 LEU SER SER TYR MET PRO GLY THR SER GLN ARG ASP ILE SEQRES 9 A 311 LEU ILE HIS ILE ILE SER ASP ARG MET ASP THR CYS PHE SEQRES 10 A 311 LYS LEU ALA GLN ASP THR MET ARG ASN PHE GLY GLU ASP SEQRES 11 A 311 GLN LEU ASP ILE LYS GLN GLU ILE HIS GLY PHE ARG ARG SEQRES 12 A 311 VAL GLU GLU ARG ASP LEU THR ASP PHE ILE ASP GLY THR SEQRES 13 A 311 GLU ASN PRO ASP GLY ASP GLU LEU ARG THR GLN TYR GLY SEQRES 14 A 311 LEU VAL ALA ALA GLY GLN PRO ASN GLU PHE GLY SER TYR SEQRES 15 A 311 VAL PHE THR GLN ARG TYR VAL HIS ASN LEU LYS LYS TRP SEQRES 16 A 311 TYR PRO GLU PRO LEU SER VAL GLN GLN ASP THR VAL GLY SEQRES 17 A 311 ARG THR LYS LYS ASP SER ILE GLU ILE PRO ARG ASP LYS SEQRES 18 A 311 ARG PRO ILE THR SER HIS VAL SER ARG THR ASP LEU SER SEQRES 19 A 311 GLU ASN GLY LYS ASP LEU LYS ILE VAL ARG GLN SER LEU SEQRES 20 A 311 PRO TYR GLY GLN ILE THR GLY GLU LYS GLY LEU MET PHE SEQRES 21 A 311 ILE ALA TYR ALA CYS SER LEU HIS ASN ILE GLU LYS GLN SEQRES 22 A 311 LEU GLN SER MET PHE GLY GLN LEU ASP GLY LYS HIS ASP SEQRES 23 A 311 LEU LEU LEU LYS TYR THR THR PRO VAL THR GLY SER PHE SEQRES 24 A 311 TYR PHE ALA PRO SER LYS LYS GLU LEU LEU GLU LEU SEQRES 1 B 311 GLY PRO LEU GLY SER MET ALA GLN SER THR VAL LEU PRO SEQRES 2 B 311 MET HIS CYS LEU TYR GLY ILE PHE LEU GLU GLY ASN LEU SEQRES 3 B 311 LYS ILE GLN LYS ASN ASP GLN GLU GLY LEU LYS LYS PHE SEQRES 4 B 311 LYS ASP ASN ILE LYS LYS PHE THR LEU GLU LEU ASP GLU SEQRES 5 B 311 ILE ASP LYS ILE SER PRO GLN SER ARG ILE GLY GLY ALA SEQRES 6 B 311 ILE CYS PHE SER SER ASP ILE TRP ASP THR VAL THR LYS SEQRES 7 B 311 LYS ILE SER LYS PRO LYS GLU LEU LYS SER VAL ASN THR SEQRES 8 B 311 LEU SER SER TYR MET PRO GLY THR SER GLN ARG ASP ILE SEQRES 9 B 311 LEU ILE HIS ILE ILE SER ASP ARG MET ASP THR CYS PHE SEQRES 10 B 311 LYS LEU ALA GLN ASP THR MET ARG ASN PHE GLY GLU ASP SEQRES 11 B 311 GLN LEU ASP ILE LYS GLN GLU ILE HIS GLY PHE ARG ARG SEQRES 12 B 311 VAL GLU GLU ARG ASP LEU THR ASP PHE ILE ASP GLY THR SEQRES 13 B 311 GLU ASN PRO ASP GLY ASP GLU LEU ARG THR GLN TYR GLY SEQRES 14 B 311 LEU VAL ALA ALA GLY GLN PRO ASN GLU PHE GLY SER TYR SEQRES 15 B 311 VAL PHE THR GLN ARG TYR VAL HIS ASN LEU LYS LYS TRP SEQRES 16 B 311 TYR PRO GLU PRO LEU SER VAL GLN GLN ASP THR VAL GLY SEQRES 17 B 311 ARG THR LYS LYS ASP SER ILE GLU ILE PRO ARG ASP LYS SEQRES 18 B 311 ARG PRO ILE THR SER HIS VAL SER ARG THR ASP LEU SER SEQRES 19 B 311 GLU ASN GLY LYS ASP LEU LYS ILE VAL ARG GLN SER LEU SEQRES 20 B 311 PRO TYR GLY GLN ILE THR GLY GLU LYS GLY LEU MET PHE SEQRES 21 B 311 ILE ALA TYR ALA CYS SER LEU HIS ASN ILE GLU LYS GLN SEQRES 22 B 311 LEU GLN SER MET PHE GLY GLN LEU ASP GLY LYS HIS ASP SEQRES 23 B 311 LEU LEU LEU LYS TYR THR THR PRO VAL THR GLY SER PHE SEQRES 24 B 311 TYR PHE ALA PRO SER LYS LYS GLU LEU LEU GLU LEU HET HEM A 401 43 HET EDO A 402 4 HET EDO A 403 4 HET NA A 404 1 HET OXY A 405 2 HET EDO B 401 4 HET HEM B 402 43 HET NA B 403 1 HET NA B 404 1 HET OXY B 405 2 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM EDO 1,2-ETHANEDIOL HETNAM NA SODIUM ION HETNAM OXY OXYGEN MOLECULE HETSYN HEM HEME HETSYN EDO ETHYLENE GLYCOL FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 EDO 3(C2 H6 O2) FORMUL 6 NA 3(NA 1+) FORMUL 7 OXY 2(O2) FORMUL 13 HOH *618(H2 O) HELIX 1 AA1 ASP A 27 SER A 52 1 26 HELIX 2 AA2 PRO A 53 ARG A 56 5 4 HELIX 3 AA3 ILE A 67 THR A 72 1 6 HELIX 4 AA4 SER A 83 SER A 88 5 6 HELIX 5 AA5 ARG A 107 GLY A 123 1 17 HELIX 6 AA6 ARG A 138 ARG A 142 5 5 HELIX 7 AA7 ASP A 155 LEU A 165 1 11 HELIX 8 AA8 ASN A 186 TYR A 191 1 6 HELIX 9 AA9 PRO A 194 GLY A 203 1 10 HELIX 10 AB1 PRO A 213 ARG A 217 5 5 HELIX 11 AB2 SER A 221 ASP A 227 1 7 HELIX 12 AB3 SER A 261 PHE A 273 1 13 HELIX 13 AB4 ASP A 281 LYS A 285 5 5 HELIX 14 AB5 SER A 299 GLU A 305 1 7 HELIX 15 AB6 ASP B 27 SER B 52 1 26 HELIX 16 AB7 PRO B 53 ARG B 56 5 4 HELIX 17 AB8 ILE B 67 THR B 72 1 6 HELIX 18 AB9 SER B 83 SER B 88 5 6 HELIX 19 AC1 ARG B 107 GLY B 123 1 17 HELIX 20 AC2 ARG B 138 ARG B 142 5 5 HELIX 21 AC3 ASP B 155 LEU B 165 1 11 HELIX 22 AC4 ASN B 186 TYR B 191 1 6 HELIX 23 AC5 PRO B 194 GLY B 203 1 10 HELIX 24 AC6 PRO B 213 ARG B 217 5 5 HELIX 25 AC7 SER B 221 ASP B 227 1 7 HELIX 26 AC8 SER B 261 PHE B 273 1 13 HELIX 27 AC9 ASP B 281 LYS B 285 5 5 HELIX 28 AD1 SER B 299 GLU B 305 1 7 SHEET 1 AA1 4 GLY A 58 PHE A 63 0 SHEET 2 AA1 4 ILE A 99 SER A 105 -1 O ILE A 104 N GLY A 58 SHEET 3 AA1 4 TYR A 13 LEU A 21 -1 N LEU A 17 O ILE A 101 SHEET 4 AA1 4 LEU A 127 PHE A 136 -1 O GLY A 135 N GLY A 14 SHEET 1 AA2 4 VAL A 238 ARG A 239 0 SHEET 2 AA2 4 LYS A 251 ALA A 259 -1 O TYR A 258 N VAL A 238 SHEET 3 AA2 4 SER A 176 HIS A 185 -1 N TYR A 183 O LEU A 253 SHEET 4 AA2 4 THR A 287 PRO A 289 -1 O THR A 288 N VAL A 184 SHEET 1 AA3 4 LEU A 242 GLY A 245 0 SHEET 2 AA3 4 LYS A 251 ALA A 259 -1 O MET A 254 N LEU A 242 SHEET 3 AA3 4 SER A 176 HIS A 185 -1 N TYR A 183 O LEU A 253 SHEET 4 AA3 4 SER A 293 ALA A 297 -1 O ALA A 297 N SER A 176 SHEET 1 AA4 2 SER A 229 GLU A 230 0 SHEET 2 AA4 2 LYS A 233 ASP A 234 -1 O LYS A 233 N GLU A 230 SHEET 1 AA5 4 GLY B 58 PHE B 63 0 SHEET 2 AA5 4 ILE B 99 SER B 105 -1 O ILE B 104 N GLY B 58 SHEET 3 AA5 4 TYR B 13 LEU B 21 -1 N LEU B 17 O ILE B 101 SHEET 4 AA5 4 LEU B 127 PHE B 136 -1 O GLY B 135 N GLY B 14 SHEET 1 AA6 4 VAL B 238 ARG B 239 0 SHEET 2 AA6 4 LYS B 251 ALA B 259 -1 O TYR B 258 N VAL B 238 SHEET 3 AA6 4 SER B 176 HIS B 185 -1 N TYR B 183 O LEU B 253 SHEET 4 AA6 4 THR B 287 PRO B 289 -1 O THR B 288 N VAL B 184 SHEET 1 AA7 4 LEU B 242 GLY B 245 0 SHEET 2 AA7 4 LYS B 251 ALA B 259 -1 O MET B 254 N LEU B 242 SHEET 3 AA7 4 SER B 176 HIS B 185 -1 N TYR B 183 O LEU B 253 SHEET 4 AA7 4 SER B 293 ALA B 297 -1 O ALA B 297 N SER B 176 SHEET 1 AA8 2 SER B 229 GLU B 230 0 SHEET 2 AA8 2 LYS B 233 ASP B 234 -1 O LYS B 233 N GLU B 230 LINK OH TYR A 13 NA NA B 404 1555 1555 2.68 LINK NE2 HIS A 222 FE HEM A 401 1555 1555 2.19 LINK FE HEM A 401 O2 OXY A 405 1555 1555 2.46 LINK NA NA A 404 O HOH B 550 1555 1555 2.75 LINK NA NA A 404 O HOH B 629 1555 1555 2.67 LINK O HOH A 584 NA NA B 404 1555 1555 2.79 LINK NE2 HIS B 222 FE HEM B 402 1555 1555 2.19 LINK FE HEM B 402 O1 OXY B 405 1555 1555 2.45 LINK NA NA B 404 O HOH B 725 1555 1555 2.78 CRYST1 141.030 141.030 95.560 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007091 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007091 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010465 0.00000