HEADER TRANSFERASE 19-APR-21 7OAM TITLE KINASE DOMAIN OF MERTK IN COMPLEX WITH COMPOUND 8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE MER; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTO-ONCOGENE C-MER,RECEPTOR TYROSINE KINASE MERTK; COMPND 5 EC: 2.7.10.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MERTK, MER; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MERTK, INHIBITOR, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, SGC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.SCHROEDER,N.RUSS,S.KNAPP,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 31-JAN-24 7OAM 1 REMARK REVDAT 2 03-NOV-21 7OAM 1 JRNL REVDAT 1 19-MAY-21 7OAM 0 JRNL AUTH N.RUSS,M.SCHRODER,B.T.BERGER,S.MANDEL,Y.AYDOGAN,S.MAUER, JRNL AUTH 2 C.POHL,D.H.DREWRY,A.CHAIKUAD,S.MULLER,S.KNAPP JRNL TITL DESIGN AND DEVELOPMENT OF A CHEMICAL PROBE FOR PSEUDOKINASE JRNL TITL 2 CA 2+ /CALMODULIN-DEPENDENT SER/THR KINASE. JRNL REF J.MED.CHEM. V. 64 14358 2021 JRNL REFN ISSN 0022-2623 JRNL PMID 34543009 JRNL DOI 10.1021/ACS.JMEDCHEM.1C00845 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 17465 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 903 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1309 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.28 REMARK 3 BIN R VALUE (WORKING SET) : 0.2920 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.3200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3893 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 48 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.30000 REMARK 3 B22 (A**2) : -1.68000 REMARK 3 B33 (A**2) : -1.63000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.32000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.972 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.332 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.258 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 25.763 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.903 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4020 ; 0.006 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3796 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5458 ; 1.382 ; 1.636 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8706 ; 1.167 ; 1.587 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 502 ; 6.709 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 169 ;32.775 ;22.012 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 652 ;15.618 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;17.526 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 533 ; 0.054 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4508 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 852 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 576 861 B 576 862 7093 0.110 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 575 A 643 REMARK 3 ORIGIN FOR THE GROUP (A): -18.233 -25.628 10.564 REMARK 3 T TENSOR REMARK 3 T11: 0.2329 T22: 0.2128 REMARK 3 T33: 0.2713 T12: -0.0469 REMARK 3 T13: -0.0641 T23: 0.0419 REMARK 3 L TENSOR REMARK 3 L11: 3.5510 L22: 0.8827 REMARK 3 L33: 3.0687 L12: -1.6580 REMARK 3 L13: 2.2449 L23: -1.4245 REMARK 3 S TENSOR REMARK 3 S11: 0.0957 S12: 0.2923 S13: 0.0460 REMARK 3 S21: -0.0558 S22: -0.0702 S23: 0.0651 REMARK 3 S31: -0.0198 S32: -0.1235 S33: -0.0254 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 644 A 862 REMARK 3 ORIGIN FOR THE GROUP (A): -1.544 -7.618 5.126 REMARK 3 T TENSOR REMARK 3 T11: 0.0785 T22: 0.0178 REMARK 3 T33: 0.0392 T12: 0.0225 REMARK 3 T13: -0.0176 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 1.6901 L22: 2.8510 REMARK 3 L33: 2.4705 L12: 0.4469 REMARK 3 L13: -0.7428 L23: -0.5652 REMARK 3 S TENSOR REMARK 3 S11: 0.0901 S12: -0.0755 S13: 0.0544 REMARK 3 S21: 0.0042 S22: -0.0010 S23: 0.1972 REMARK 3 S31: -0.0017 S32: -0.0509 S33: -0.0891 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 576 B 673 REMARK 3 ORIGIN FOR THE GROUP (A): -17.752 31.745 16.938 REMARK 3 T TENSOR REMARK 3 T11: 0.2127 T22: 0.2730 REMARK 3 T33: 0.1105 T12: 0.0456 REMARK 3 T13: -0.0060 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 3.4454 L22: 2.5081 REMARK 3 L33: 1.7474 L12: -0.1826 REMARK 3 L13: 1.1534 L23: -0.3676 REMARK 3 S TENSOR REMARK 3 S11: -0.0640 S12: -0.3265 S13: -0.0209 REMARK 3 S21: 0.1824 S22: 0.0950 S23: 0.4451 REMARK 3 S31: -0.1396 S32: -0.6818 S33: -0.0311 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 674 B 862 REMARK 3 ORIGIN FOR THE GROUP (A): -5.189 10.668 30.285 REMARK 3 T TENSOR REMARK 3 T11: 0.0729 T22: 0.0202 REMARK 3 T33: 0.0534 T12: 0.0295 REMARK 3 T13: -0.0082 T23: -0.0236 REMARK 3 L TENSOR REMARK 3 L11: 1.4899 L22: 3.8010 REMARK 3 L33: 3.7425 L12: 0.0313 REMARK 3 L13: 0.0848 L23: 0.0700 REMARK 3 S TENSOR REMARK 3 S11: -0.0784 S12: -0.0198 S13: 0.0069 REMARK 3 S21: 0.0775 S22: 0.0185 S23: 0.0102 REMARK 3 S31: 0.0525 S32: -0.0349 S33: 0.0600 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7OAM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-APR-21. REMARK 100 THE DEPOSITION ID IS D_1292115382. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18384 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 45.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.17700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 1.05500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4M3Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% PEG 400, 0.2M MGCL2, 0.1M TRIS, PH REMARK 280 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 45.65750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 569 REMARK 465 MET A 570 REMARK 465 GLU A 571 REMARK 465 GLU A 572 REMARK 465 LEU A 573 REMARK 465 GLN A 574 REMARK 465 GLY A 596 REMARK 465 GLU A 597 REMARK 465 PHE A 598 REMARK 465 GLY A 599 REMARK 465 MET A 658 REMARK 465 SER A 659 REMARK 465 SER A 660 REMARK 465 GLN A 661 REMARK 465 GLY A 662 REMARK 465 ILE A 663 REMARK 465 GLY A 742 REMARK 465 LEU A 743 REMARK 465 SER A 744 REMARK 465 LYS A 745 REMARK 465 LYS A 746 REMARK 465 ILE A 747 REMARK 465 TYR A 748 REMARK 465 SER A 749 REMARK 465 GLY A 750 REMARK 465 ASP A 751 REMARK 465 TYR A 752 REMARK 465 TYR A 753 REMARK 465 ARG A 754 REMARK 465 GLN A 755 REMARK 465 GLY A 756 REMARK 465 ARG A 757 REMARK 465 ILE A 758 REMARK 465 ALA A 759 REMARK 465 LYS A 760 REMARK 465 VAL A 863 REMARK 465 SER B 569 REMARK 465 MET B 570 REMARK 465 GLU B 571 REMARK 465 GLU B 572 REMARK 465 LEU B 573 REMARK 465 GLN B 574 REMARK 465 ASN B 575 REMARK 465 GLY B 596 REMARK 465 MET B 621 REMARK 465 LYS B 622 REMARK 465 LEU B 623 REMARK 465 ASP B 624 REMARK 465 ASN B 625 REMARK 465 SER B 626 REMARK 465 SER B 627 REMARK 465 GLN B 628 REMARK 465 ARG B 629 REMARK 465 GLU B 630 REMARK 465 ILE B 631 REMARK 465 GLU B 632 REMARK 465 GLU B 633 REMARK 465 PHE B 634 REMARK 465 LEU B 635 REMARK 465 SER B 636 REMARK 465 GLU B 637 REMARK 465 GLY B 743 REMARK 465 LEU B 744 REMARK 465 SER B 745 REMARK 465 LYS B 746 REMARK 465 LYS B 747 REMARK 465 ILE B 748 REMARK 465 TYR B 749 REMARK 465 SER B 750 REMARK 465 GLY B 751 REMARK 465 ASP B 752 REMARK 465 TYR B 753 REMARK 465 TYR B 754 REMARK 465 ARG B 755 REMARK 465 GLN B 756 REMARK 465 GLY B 757 REMARK 465 ARG B 758 REMARK 465 ILE B 759 REMARK 465 ALA B 760 REMARK 465 LYS B 761 REMARK 465 ASP B 863 REMARK 465 VAL B 864 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 575 CG OD1 ND2 REMARK 470 LYS A 576 CG CD CE NZ REMARK 470 GLU A 578 CG CD OE1 OE2 REMARK 470 ASP A 579 CG OD1 OD2 REMARK 470 VAL A 580 CG1 CG2 REMARK 470 ASN A 585 CG OD1 ND2 REMARK 470 GLU A 609 CG CD OE1 OE2 REMARK 470 LYS A 619 CG CD CE NZ REMARK 470 MET A 621 CG SD CE REMARK 470 LYS A 621A CG CD CE NZ REMARK 470 ASN A 624 CG OD1 ND2 REMARK 470 SER A 625 OG REMARK 470 ARG A 628 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 629 CG CD OE1 OE2 REMARK 470 GLU A 631 CG CD OE1 OE2 REMARK 470 GLU A 632 CG CD OE1 OE2 REMARK 470 SER A 635 OG REMARK 470 GLU A 636 CG CD OE1 OE2 REMARK 470 GLU A 657 CG CD OE1 OE2 REMARK 470 LYS A 665 CG CD CE NZ REMARK 470 LYS A 692 CG CD CE NZ REMARK 470 HIS A 693 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 696 CG CD1 CD2 REMARK 470 ARG A 716 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 717 CG OD1 ND2 REMARK 470 ARG A 726 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 741 CG CD1 CD2 CE1 CE2 CZ REMARK 470 MET A 761 CG SD CE REMARK 470 ASP A 773 CG OD1 OD2 REMARK 470 ARG A 774 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 807 CG CD OE1 OE2 REMARK 470 GLN A 852 CG CD OE1 NE2 REMARK 470 ASP A 862 CG OD1 OD2 REMARK 470 GLU B 578 CG CD OE1 OE2 REMARK 470 ASP B 579 CG OD1 OD2 REMARK 470 GLU B 595 CG CD OE1 OE2 REMARK 470 GLU B 597 CG CD OE1 OE2 REMARK 470 PHE B 598 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 609 CG CD OE1 OE2 REMARK 470 LYS B 619 CG CD CE NZ REMARK 470 CYS B 640 SG REMARK 470 MET B 641 CG SD CE REMARK 470 LYS B 642 CG CD CE NZ REMARK 470 ARG B 651 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 657 CG1 CG2 CD1 REMARK 470 GLU B 658 CG CD OE1 OE2 REMARK 470 SER B 661 OG REMARK 470 ILE B 664 CG1 CG2 CD1 REMARK 470 LYS B 666 CG CD CE NZ REMARK 470 LYS B 693 CG CD CE NZ REMARK 470 LEU B 697 CG CD1 CD2 REMARK 470 GLN B 698 CG CD OE1 NE2 REMARK 470 ARG B 717 CG CD NE CZ NH1 NH2 REMARK 470 MET B 762 CG SD CE REMARK 470 SER B 771 OG REMARK 470 ASP B 774 CG OD1 OD2 REMARK 470 ARG B 775 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 824 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU B 857 O HOH B 1001 1.74 REMARK 500 N LEU B 861 O HOH B 1001 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 645 135.24 -174.82 REMARK 500 HIS A 693 108.49 -56.74 REMARK 500 ARG A 721 -5.74 83.28 REMARK 500 ASP A 722 46.57 -150.80 REMARK 500 ALA A 772 -75.93 -76.12 REMARK 500 ARG A 774 50.74 72.67 REMARK 500 MET B 641 31.40 -89.43 REMARK 500 ASP B 643 -13.62 94.63 REMARK 500 HIS B 694 109.66 -58.11 REMARK 500 ARG B 722 -10.13 85.61 REMARK 500 ASP B 723 50.52 -148.16 REMARK 500 ALA B 773 -78.11 -67.89 REMARK 500 ARG B 775 56.41 -68.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue V6H B 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 902 DBREF 7OAM A 571 863 UNP Q12866 MERTK_HUMAN 571 864 DBREF 7OAM B 571 864 UNP Q12866 MERTK_HUMAN 571 864 SEQADV 7OAM SER A 569 UNP Q12866 EXPRESSION TAG SEQADV 7OAM MET A 570 UNP Q12866 EXPRESSION TAG SEQADV 7OAM SER B 569 UNP Q12866 EXPRESSION TAG SEQADV 7OAM MET B 570 UNP Q12866 EXPRESSION TAG SEQRES 1 A 296 SER MET GLU GLU LEU GLN ASN LYS LEU GLU ASP VAL VAL SEQRES 2 A 296 ILE ASP ARG ASN LEU LEU ILE LEU GLY LYS ILE LEU GLY SEQRES 3 A 296 GLU GLY GLU PHE GLY SER VAL MET GLU GLY ASN LEU LYS SEQRES 4 A 296 GLN GLU ASP GLY THR SER LEU LYS VAL ALA VAL LYS THR SEQRES 5 A 296 MET LYS LEU ASP ASN SER SER GLN ARG GLU ILE GLU GLU SEQRES 6 A 296 PHE LEU SER GLU ALA ALA CYS MET LYS ASP PHE SER HIS SEQRES 7 A 296 PRO ASN VAL ILE ARG LEU LEU GLY VAL CYS ILE GLU MET SEQRES 8 A 296 SER SER GLN GLY ILE PRO LYS PRO MET VAL ILE LEU PRO SEQRES 9 A 296 PHE MET LYS TYR GLY ASP LEU HIS THR TYR LEU LEU TYR SEQRES 10 A 296 SER ARG LEU GLU THR GLY PRO LYS HIS ILE PRO LEU GLN SEQRES 11 A 296 THR LEU LEU LYS PHE MET VAL ASP ILE ALA LEU GLY MET SEQRES 12 A 296 GLU TYR LEU SER ASN ARG ASN PHE LEU HIS ARG ASP LEU SEQRES 13 A 296 ALA ALA ARG ASN CYS MET LEU ARG ASP ASP MET THR VAL SEQRES 14 A 296 CYS VAL ALA ASP PHE GLY LEU SER LYS LYS ILE TYR SER SEQRES 15 A 296 GLY ASP TYR TYR ARG GLN GLY ARG ILE ALA LYS MET PRO SEQRES 16 A 296 VAL LYS TRP ILE ALA ILE GLU SER LEU ALA ASP ARG VAL SEQRES 17 A 296 TYR THR SER LYS SER ASP VAL TRP ALA PHE GLY VAL THR SEQRES 18 A 296 MET TRP GLU ILE ALA THR ARG GLY MET THR PRO TYR PRO SEQRES 19 A 296 GLY VAL GLN ASN HIS GLU MET TYR ASP TYR LEU LEU HIS SEQRES 20 A 296 GLY HIS ARG LEU LYS GLN PRO GLU ASP CYS LEU ASP GLU SEQRES 21 A 296 LEU TYR GLU ILE MET TYR SER CYS TRP ARG THR ASP PRO SEQRES 22 A 296 LEU ASP ARG PRO THR PHE SER VAL LEU ARG LEU GLN LEU SEQRES 23 A 296 GLU LYS LEU LEU GLU SER LEU PRO ASP VAL SEQRES 1 B 296 SER MET GLU GLU LEU GLN ASN LYS LEU GLU ASP VAL VAL SEQRES 2 B 296 ILE ASP ARG ASN LEU LEU ILE LEU GLY LYS ILE LEU GLY SEQRES 3 B 296 GLU GLY GLU PHE GLY SER VAL MET GLU GLY ASN LEU LYS SEQRES 4 B 296 GLN GLU ASP GLY THR SER LEU LYS VAL ALA VAL LYS THR SEQRES 5 B 296 MET LYS LEU ASP ASN SER SER GLN ARG GLU ILE GLU GLU SEQRES 6 B 296 PHE LEU SER GLU ALA ALA CYS MET LYS ASP PHE SER HIS SEQRES 7 B 296 PRO ASN VAL ILE ARG LEU LEU GLY VAL CYS ILE GLU MET SEQRES 8 B 296 SER SER GLN GLY ILE PRO LYS PRO MET VAL ILE LEU PRO SEQRES 9 B 296 PHE MET LYS TYR GLY ASP LEU HIS THR TYR LEU LEU TYR SEQRES 10 B 296 SER ARG LEU GLU THR GLY PRO LYS HIS ILE PRO LEU GLN SEQRES 11 B 296 THR LEU LEU LYS PHE MET VAL ASP ILE ALA LEU GLY MET SEQRES 12 B 296 GLU TYR LEU SER ASN ARG ASN PHE LEU HIS ARG ASP LEU SEQRES 13 B 296 ALA ALA ARG ASN CYS MET LEU ARG ASP ASP MET THR VAL SEQRES 14 B 296 CYS VAL ALA ASP PHE GLY LEU SER LYS LYS ILE TYR SER SEQRES 15 B 296 GLY ASP TYR TYR ARG GLN GLY ARG ILE ALA LYS MET PRO SEQRES 16 B 296 VAL LYS TRP ILE ALA ILE GLU SER LEU ALA ASP ARG VAL SEQRES 17 B 296 TYR THR SER LYS SER ASP VAL TRP ALA PHE GLY VAL THR SEQRES 18 B 296 MET TRP GLU ILE ALA THR ARG GLY MET THR PRO TYR PRO SEQRES 19 B 296 GLY VAL GLN ASN HIS GLU MET TYR ASP TYR LEU LEU HIS SEQRES 20 B 296 GLY HIS ARG LEU LYS GLN PRO GLU ASP CYS LEU ASP GLU SEQRES 21 B 296 LEU TYR GLU ILE MET TYR SER CYS TRP ARG THR ASP PRO SEQRES 22 B 296 LEU ASP ARG PRO THR PHE SER VAL LEU ARG LEU GLN LEU SEQRES 23 B 296 GLU LYS LEU LEU GLU SER LEU PRO ASP VAL HET EDO A 901 4 HET EDO A 902 4 HET V6H B 901 34 HET EDO B 902 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM V6H 2-[[2,5-BIS(FLUORANYL)PHENYL]METHYLAMINO]-4- HETNAM 2 V6H (CYCLOPENTYLAMINO)-N-[3-(2-OXIDANYLIDENEPYRROLIDIN-1- HETNAM 3 V6H YL)PROPYL]PYRIMIDINE-5-CARBOXAMIDE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 3(C2 H6 O2) FORMUL 5 V6H C24 H30 F2 N6 O2 FORMUL 7 HOH *48(H2 O) HELIX 1 AA1 ASP A 583 ASN A 585 5 3 HELIX 2 AA2 GLN A 627 LYS A 641 1 15 HELIX 3 AA3 ASP A 677 ARG A 686 1 10 HELIX 4 AA4 PRO A 695 ARG A 716 1 22 HELIX 5 AA5 ALA A 724 ARG A 726 5 3 HELIX 6 AA6 PRO A 762 ILE A 766 5 5 HELIX 7 AA7 ALA A 767 ASP A 773 1 7 HELIX 8 AA8 THR A 777 THR A 794 1 18 HELIX 9 AA9 GLN A 804 HIS A 806 5 3 HELIX 10 AB1 GLU A 807 HIS A 814 1 8 HELIX 11 AB2 LEU A 825 SER A 834 1 10 HELIX 12 AB3 CYS A 835 ARG A 837 5 3 HELIX 13 AB4 ASP A 839 ARG A 843 5 5 HELIX 14 AB5 THR A 845 LEU A 860 1 16 HELIX 15 AB6 LEU B 577 VAL B 581 5 5 HELIX 16 AB7 ASP B 583 ASN B 585 5 3 HELIX 17 AB8 ASP B 678 ARG B 687 1 10 HELIX 18 AB9 PRO B 696 ARG B 717 1 22 HELIX 19 AC1 ALA B 725 ARG B 727 5 3 HELIX 20 AC2 PRO B 763 ILE B 767 5 5 HELIX 21 AC3 ALA B 768 ASP B 774 1 7 HELIX 22 AC4 THR B 778 THR B 795 1 18 HELIX 23 AC5 GLN B 805 HIS B 807 5 3 HELIX 24 AC6 GLU B 808 HIS B 815 1 8 HELIX 25 AC7 LEU B 826 SER B 835 1 10 HELIX 26 AC8 CYS B 836 ARG B 838 5 3 HELIX 27 AC9 ASP B 840 ARG B 844 5 5 HELIX 28 AD1 THR B 846 LEU B 861 1 16 SHEET 1 AA1 5 LEU A 587 GLY A 594 0 SHEET 2 AA1 5 VAL A 601 LYS A 607 -1 O VAL A 601 N GLY A 594 SHEET 3 AA1 5 SER A 613 THR A 620 -1 O LEU A 614 N LEU A 606 SHEET 4 AA1 5 PRO A 666 PRO A 671 -1 O VAL A 668 N LYS A 619 SHEET 5 AA1 5 GLY A 653 ILE A 656 -1 N CYS A 655 O MET A 667 SHEET 1 AA2 2 CYS A 728 LEU A 730 0 SHEET 2 AA2 2 VAL A 736 VAL A 738 -1 O CYS A 737 N MET A 729 SHEET 1 AA3 5 LEU B 587 GLY B 594 0 SHEET 2 AA3 5 VAL B 601 LYS B 607 -1 O VAL B 601 N GLY B 594 SHEET 3 AA3 5 SER B 613 LYS B 619 -1 O LEU B 614 N LEU B 606 SHEET 4 AA3 5 PRO B 665 PRO B 672 -1 O VAL B 669 N LYS B 619 SHEET 5 AA3 5 GLY B 654 MET B 659 -1 N CYS B 656 O MET B 668 SHEET 1 AA4 2 CYS B 729 LEU B 731 0 SHEET 2 AA4 2 VAL B 737 VAL B 739 -1 O CYS B 738 N MET B 730 SITE 1 AC1 2 ALA A 617 MET A 673 SITE 1 AC2 6 PRO A 646 VAL A 648 ILE A 649 ARG A 650 SITE 2 AC2 6 PRO A 671 ARG A 731 SITE 1 AC3 13 LEU B 593 VAL B 601 ALA B 617 ILE B 650 SITE 2 AC3 13 LEU B 671 PRO B 672 MET B 674 LYS B 675 SITE 3 AC3 13 GLY B 677 MET B 730 ALA B 740 ASP B 741 SITE 4 AC3 13 HOH B1005 SITE 1 AC4 5 TYR B 676 GLY B 677 ASP B 678 THR B 681 SITE 2 AC4 5 TYR B 682 CRYST1 51.487 91.315 69.680 90.00 100.78 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019422 0.000000 0.003698 0.00000 SCALE2 0.000000 0.010951 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014609 0.00000