HEADER SIGNALING PROTEIN 22-APR-21 7OBJ TITLE CARBON REGULATORY PII-LIKE PROTEIN SBTB FROM SYNECHOCYSTIS SP. 6803 IN TITLE 2 COMPLEX WITH CYCLIC DI-AMP (C-DI-AMP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEMBRANE-ASSOCIATED PROTEIN SLR1513; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: SBTB PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCYSTIS SP. PCC 6803; SOURCE 3 ORGANISM_TAXID: 1148; SOURCE 4 GENE: SLR1513; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SBTB, CARBON SENSING, PII-LIKE, CYANOBACTERIA, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.A.SELIM,R.ALBRECHT,M.D.HARTMANN REVDAT 2 31-JAN-24 7OBJ 1 REMARK REVDAT 1 02-FEB-22 7OBJ 0 JRNL AUTH K.A.SELIM,M.HAFFNER,M.BURKHARDT,O.MANTOVANI,N.NEUMANN, JRNL AUTH 2 R.ALBRECHT,R.SEIFERT,L.KRUGER,J.STULKE,M.D.HARTMANN, JRNL AUTH 3 M.HAGEMANN,K.FORCHHAMMER JRNL TITL DIURNAL METABOLIC CONTROL IN CYANOBACTERIA REQUIRES JRNL TITL 2 PERCEPTION OF SECOND MESSENGER SIGNALING MOLECULE C-DI-AMP JRNL TITL 3 BY THE CARBON CONTROL PROTEIN SBTB. JRNL REF SCI ADV V. 7 K0568 2021 JRNL REFN ESSN 2375-2548 JRNL PMID 34878830 JRNL DOI 10.1126/SCIADV.ABK0568 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 23454 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1231 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1675 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.3760 REMARK 3 BIN FREE R VALUE SET COUNT : 84 REMARK 3 BIN FREE R VALUE : 0.3870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2287 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 105 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.41000 REMARK 3 B22 (A**2) : 0.41000 REMARK 3 B33 (A**2) : -1.34000 REMARK 3 B12 (A**2) : 0.21000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.156 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.143 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.128 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.758 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2445 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2349 ; 0.008 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3316 ; 1.927 ; 2.022 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5437 ; 1.320 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 305 ; 6.561 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 85 ;39.037 ;25.294 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 434 ;14.631 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;25.179 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 385 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2641 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 491 ; 0.007 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 3 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 2 110 B 2 110 5440 0.120 0.050 REMARK 3 2 A 2 111 C 2 111 5482 0.110 0.050 REMARK 3 3 B 2 111 C 2 111 5346 0.130 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 111 REMARK 3 ORIGIN FOR THE GROUP (A): -14.9591 22.2039 -2.0321 REMARK 3 T TENSOR REMARK 3 T11: 0.1049 T22: 0.1228 REMARK 3 T33: 0.0844 T12: 0.0805 REMARK 3 T13: -0.0540 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 4.3351 L22: 3.7318 REMARK 3 L33: 3.1427 L12: 0.7713 REMARK 3 L13: -0.6861 L23: -0.1053 REMARK 3 S TENSOR REMARK 3 S11: 0.0044 S12: 0.0821 S13: 0.1193 REMARK 3 S21: -0.1890 S22: 0.0607 S23: 0.4254 REMARK 3 S31: -0.1627 S32: -0.4036 S33: -0.0651 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 114 REMARK 3 ORIGIN FOR THE GROUP (A): -6.4487 7.7069 7.8577 REMARK 3 T TENSOR REMARK 3 T11: 0.0891 T22: 0.0650 REMARK 3 T33: 0.0275 T12: -0.0237 REMARK 3 T13: -0.0319 T23: 0.0247 REMARK 3 L TENSOR REMARK 3 L11: 5.1000 L22: 5.0509 REMARK 3 L33: 2.4493 L12: -1.3332 REMARK 3 L13: -0.3186 L23: -0.5627 REMARK 3 S TENSOR REMARK 3 S11: 0.0809 S12: -0.2485 S13: -0.0595 REMARK 3 S21: 0.1157 S22: 0.0461 S23: 0.1330 REMARK 3 S31: -0.1082 S32: -0.1866 S33: -0.1270 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 112 REMARK 3 ORIGIN FOR THE GROUP (A): 4.4415 18.1974 -5.4375 REMARK 3 T TENSOR REMARK 3 T11: 0.0943 T22: 0.0277 REMARK 3 T33: 0.0799 T12: -0.0276 REMARK 3 T13: -0.0038 T23: -0.0203 REMARK 3 L TENSOR REMARK 3 L11: 1.7100 L22: 3.9785 REMARK 3 L33: 6.1173 L12: 0.6870 REMARK 3 L13: -0.7237 L23: -1.6595 REMARK 3 S TENSOR REMARK 3 S11: 0.0089 S12: -0.1074 S13: -0.1099 REMARK 3 S21: -0.0266 S22: 0.0101 S23: -0.3157 REMARK 3 S31: -0.1738 S32: 0.2257 S33: -0.0190 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7OBJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-APR-21. REMARK 100 THE DEPOSITION ID IS D_1292115422. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24685 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 32.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.6100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 10.10 REMARK 200 R MERGE FOR SHELL (I) : 2.23100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.030 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 5O3R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M PHOSPHATE-CITRATE PH 4.2, 40% REMARK 280 (W/V) PEG 300, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.48867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.24433 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 44 REMARK 465 VAL A 45 REMARK 465 ARG A 46 REMARK 465 SER A 47 REMARK 465 SER A 48 REMARK 465 GLY A 49 REMARK 465 GLN A 50 REMARK 465 PRO A 51 REMARK 465 ASN A 52 REMARK 465 THR A 53 REMARK 465 ALA A 112 REMARK 465 TRP A 113 REMARK 465 SER A 114 REMARK 465 HIS A 115 REMARK 465 PRO A 116 REMARK 465 GLN A 117 REMARK 465 PHE A 118 REMARK 465 GLU A 119 REMARK 465 LYS A 120 REMARK 465 MET B 1 REMARK 465 ARG B 43 REMARK 465 ASN B 44 REMARK 465 VAL B 45 REMARK 465 ARG B 46 REMARK 465 SER B 47 REMARK 465 SER B 48 REMARK 465 GLY B 49 REMARK 465 GLN B 50 REMARK 465 PRO B 51 REMARK 465 ASN B 52 REMARK 465 HIS B 115 REMARK 465 PRO B 116 REMARK 465 GLN B 117 REMARK 465 PHE B 118 REMARK 465 GLU B 119 REMARK 465 LYS B 120 REMARK 465 MET C 1 REMARK 465 ASN C 44 REMARK 465 VAL C 45 REMARK 465 ARG C 46 REMARK 465 SER C 47 REMARK 465 SER C 48 REMARK 465 GLY C 49 REMARK 465 GLN C 50 REMARK 465 PRO C 51 REMARK 465 ASN C 52 REMARK 465 THR C 53 REMARK 465 SER C 54 REMARK 465 TRP C 113 REMARK 465 SER C 114 REMARK 465 HIS C 115 REMARK 465 PRO C 116 REMARK 465 GLN C 117 REMARK 465 PHE C 118 REMARK 465 GLU C 119 REMARK 465 LYS C 120 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 43 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 108 CG CD OE1 OE2 REMARK 470 SER B 42 OG REMARK 470 GLU B 108 CG CD OE1 OE2 REMARK 470 ARG C 43 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 108 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1P1 2BA A 201 O HOH A 301 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 78 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 78 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP B 113 -95.87 -102.88 REMARK 500 CYS C 110 27.57 -78.68 REMARK 500 REMARK 500 REMARK: NULL DBREF 7OBJ A 1 110 UNP P73954 Y1513_SYNY3 1 110 DBREF 7OBJ B 1 110 UNP P73954 Y1513_SYNY3 1 110 DBREF 7OBJ C 1 110 UNP P73954 Y1513_SYNY3 1 110 SEQADV 7OBJ SER A 111 UNP P73954 EXPRESSION TAG SEQADV 7OBJ ALA A 112 UNP P73954 EXPRESSION TAG SEQADV 7OBJ TRP A 113 UNP P73954 EXPRESSION TAG SEQADV 7OBJ SER A 114 UNP P73954 EXPRESSION TAG SEQADV 7OBJ HIS A 115 UNP P73954 EXPRESSION TAG SEQADV 7OBJ PRO A 116 UNP P73954 EXPRESSION TAG SEQADV 7OBJ GLN A 117 UNP P73954 EXPRESSION TAG SEQADV 7OBJ PHE A 118 UNP P73954 EXPRESSION TAG SEQADV 7OBJ GLU A 119 UNP P73954 EXPRESSION TAG SEQADV 7OBJ LYS A 120 UNP P73954 EXPRESSION TAG SEQADV 7OBJ SER B 111 UNP P73954 EXPRESSION TAG SEQADV 7OBJ ALA B 112 UNP P73954 EXPRESSION TAG SEQADV 7OBJ TRP B 113 UNP P73954 EXPRESSION TAG SEQADV 7OBJ SER B 114 UNP P73954 EXPRESSION TAG SEQADV 7OBJ HIS B 115 UNP P73954 EXPRESSION TAG SEQADV 7OBJ PRO B 116 UNP P73954 EXPRESSION TAG SEQADV 7OBJ GLN B 117 UNP P73954 EXPRESSION TAG SEQADV 7OBJ PHE B 118 UNP P73954 EXPRESSION TAG SEQADV 7OBJ GLU B 119 UNP P73954 EXPRESSION TAG SEQADV 7OBJ LYS B 120 UNP P73954 EXPRESSION TAG SEQADV 7OBJ SER C 111 UNP P73954 EXPRESSION TAG SEQADV 7OBJ ALA C 112 UNP P73954 EXPRESSION TAG SEQADV 7OBJ TRP C 113 UNP P73954 EXPRESSION TAG SEQADV 7OBJ SER C 114 UNP P73954 EXPRESSION TAG SEQADV 7OBJ HIS C 115 UNP P73954 EXPRESSION TAG SEQADV 7OBJ PRO C 116 UNP P73954 EXPRESSION TAG SEQADV 7OBJ GLN C 117 UNP P73954 EXPRESSION TAG SEQADV 7OBJ PHE C 118 UNP P73954 EXPRESSION TAG SEQADV 7OBJ GLU C 119 UNP P73954 EXPRESSION TAG SEQADV 7OBJ LYS C 120 UNP P73954 EXPRESSION TAG SEQRES 1 A 120 MET ALA LYS PRO ALA ASN LYS LEU VAL ILE VAL THR GLU SEQRES 2 A 120 LYS ILE LEU LEU LYS LYS ILE ALA LYS ILE ILE ASP GLU SEQRES 3 A 120 SER GLY ALA LYS GLY TYR THR VAL MET ASN THR GLY GLY SEQRES 4 A 120 LYS GLY SER ARG ASN VAL ARG SER SER GLY GLN PRO ASN SEQRES 5 A 120 THR SER ASP ILE GLU ALA ASN ILE LYS PHE GLU ILE LEU SEQRES 6 A 120 THR GLU THR ARG GLU MET ALA GLU GLU ILE ALA ASP ARG SEQRES 7 A 120 VAL ALA VAL LYS TYR PHE ASN ASP TYR ALA GLY ILE ILE SEQRES 8 A 120 TYR ILE CYS SER ALA GLU VAL LEU TYR GLY HIS THR PHE SEQRES 9 A 120 CYS GLY PRO GLU GLY CYS SER ALA TRP SER HIS PRO GLN SEQRES 10 A 120 PHE GLU LYS SEQRES 1 B 120 MET ALA LYS PRO ALA ASN LYS LEU VAL ILE VAL THR GLU SEQRES 2 B 120 LYS ILE LEU LEU LYS LYS ILE ALA LYS ILE ILE ASP GLU SEQRES 3 B 120 SER GLY ALA LYS GLY TYR THR VAL MET ASN THR GLY GLY SEQRES 4 B 120 LYS GLY SER ARG ASN VAL ARG SER SER GLY GLN PRO ASN SEQRES 5 B 120 THR SER ASP ILE GLU ALA ASN ILE LYS PHE GLU ILE LEU SEQRES 6 B 120 THR GLU THR ARG GLU MET ALA GLU GLU ILE ALA ASP ARG SEQRES 7 B 120 VAL ALA VAL LYS TYR PHE ASN ASP TYR ALA GLY ILE ILE SEQRES 8 B 120 TYR ILE CYS SER ALA GLU VAL LEU TYR GLY HIS THR PHE SEQRES 9 B 120 CYS GLY PRO GLU GLY CYS SER ALA TRP SER HIS PRO GLN SEQRES 10 B 120 PHE GLU LYS SEQRES 1 C 120 MET ALA LYS PRO ALA ASN LYS LEU VAL ILE VAL THR GLU SEQRES 2 C 120 LYS ILE LEU LEU LYS LYS ILE ALA LYS ILE ILE ASP GLU SEQRES 3 C 120 SER GLY ALA LYS GLY TYR THR VAL MET ASN THR GLY GLY SEQRES 4 C 120 LYS GLY SER ARG ASN VAL ARG SER SER GLY GLN PRO ASN SEQRES 5 C 120 THR SER ASP ILE GLU ALA ASN ILE LYS PHE GLU ILE LEU SEQRES 6 C 120 THR GLU THR ARG GLU MET ALA GLU GLU ILE ALA ASP ARG SEQRES 7 C 120 VAL ALA VAL LYS TYR PHE ASN ASP TYR ALA GLY ILE ILE SEQRES 8 C 120 TYR ILE CYS SER ALA GLU VAL LEU TYR GLY HIS THR PHE SEQRES 9 C 120 CYS GLY PRO GLU GLY CYS SER ALA TRP SER HIS PRO GLN SEQRES 10 C 120 PHE GLU LYS HET 2BA A 201 44 HET 2BA A 202 44 HETNAM 2BA (2R,3R,3AS,5R,7AR,9R,10R,10AS,12R,14AR)-2,9-BIS(6- HETNAM 2 2BA AMINO-9H-PURIN-9-YL)OCTAHYDRO-2H,7H-DIFURO[3,2-D:3', HETNAM 3 2BA 2'-J][1,3,7,9,2,8 ]TETRAOXADIPHOSPHACYCLODODECINE-3,5, HETNAM 4 2BA 10,12-TETROL 5,12-DIOXIDE HETSYN 2BA BIS-(3',5')-CYCLIC-DIMERIC-ADENOSINE-MONOPHOSPHATE FORMUL 4 2BA 2(C20 H24 N10 O12 P2) FORMUL 6 HOH *105(H2 O) HELIX 1 AA1 LEU A 16 SER A 27 1 12 HELIX 2 AA2 THR A 68 PHE A 84 1 17 HELIX 3 AA3 GLY A 101 GLY A 106 1 6 HELIX 4 AA4 LEU B 16 SER B 27 1 12 HELIX 5 AA5 THR B 68 PHE B 84 1 17 HELIX 6 AA6 GLY B 101 GLY B 106 1 6 HELIX 7 AA7 LEU C 16 SER C 27 1 12 HELIX 8 AA8 THR C 68 PHE C 84 1 17 HELIX 9 AA9 GLY C 101 GLY C 106 1 6 SHEET 1 A 4 GLY A 89 VAL A 98 0 SHEET 2 A 4 LYS A 3 THR A 12 -1 N VAL A 11 O ILE A 90 SHEET 3 A 4 GLU A 57 THR A 66 -1 N THR A 66 O ASN A 6 SHEET 4 A 4 THR A 33 GLY A 39 -1 N GLY A 39 O GLU A 57 SHEET 1 B 4 GLY B 89 VAL B 98 0 SHEET 2 B 4 LYS B 3 GLU B 13 -1 N VAL B 11 O ILE B 90 SHEET 3 B 4 GLU B 57 THR B 66 -1 N THR B 66 O ASN B 6 SHEET 4 B 4 THR B 33 GLY B 39 -1 N GLY B 39 O GLU B 57 SHEET 1 C 4 GLY C 89 VAL C 98 0 SHEET 2 C 4 LYS C 3 THR C 12 -1 N VAL C 11 O ILE C 90 SHEET 3 C 4 GLU C 57 THR C 66 -1 N THR C 66 O ASN C 6 SHEET 4 C 4 THR C 33 GLY C 39 -1 N GLY C 39 O GLU C 57 SSBOND 1 CYS A 105 CYS A 110 1555 1555 2.03 SSBOND 2 CYS B 105 CYS B 110 1555 1555 2.05 SSBOND 3 CYS C 105 CYS C 110 1555 1555 2.01 CRYST1 63.171 63.171 81.733 90.00 90.00 120.00 P 32 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015830 0.009139 0.000000 0.00000 SCALE2 0.000000 0.018279 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012235 0.00000