HEADER LYASE 23-APR-21 7OBU TITLE CRYSTAL STRUCTURE OF HOLO-F210W MUTANT OF HYDROXY KETONE ALDOLASE TITLE 2 (SWHKA) FROM SPHINGOMONAS WITTICHII RW1, WITH THE ACTIVE SITE IN THE TITLE 3 RESTING AND THE ACTIVE STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HPCH/HPAI ALDOLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPHINGOMONAS WITTICHII (STRAIN RW1 / DSM 6014 / SOURCE 3 JCM 10273); SOURCE 4 ORGANISM_TAXID: 392499; SOURCE 5 STRAIN: RW1 / DSM 6014 / JCM 10273; SOURCE 6 GENE: SWIT_5035; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CLASS II PYRUVATE ALDOLASE, METAL DEPENDENT, ALDOL REACTION, KEYWDS 2 HYDROXYPYRUVATE, PYRUVATE, ALDOLASE, CARBON BOND FORMATION, HOLO, KEYWDS 3 LYASE EXPDTA X-RAY DIFFRACTION AUTHOR J.LAUSTSEN,I.JUSTO,S.R.MARSDEN,U.HANEFELD,I.BENTO REVDAT 4 31-JAN-24 7OBU 1 REMARK REVDAT 3 07-DEC-22 7OBU 1 JRNL REVDAT 2 23-NOV-22 7OBU 1 JRNL REVDAT 1 26-OCT-22 7OBU 0 JRNL AUTH S.R.MARSDEN,H.J.WIJMA,M.K.F.MOHR,I.JUSTO,P.L.HAGEDOORN, JRNL AUTH 2 J.LAUSTSEN,C.M.JEFFRIES,D.SVERGUN,L.MESTROM,D.G.G.MCMILLAN, JRNL AUTH 3 I.BENTO,U.HANEFELD JRNL TITL SUBSTRATE INDUCED MOVEMENT OF THE METAL COFACTOR BETWEEN JRNL TITL 2 ACTIVE AND RESTING STATE. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 61 13338 2022 JRNL REFN ESSN 1521-3773 JRNL PMID 36214476 JRNL DOI 10.1002/ANIE.202213338 REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.1_4122 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 131014 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.131 REMARK 3 R VALUE (WORKING SET) : 0.129 REMARK 3 FREE R VALUE : 0.157 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 6617 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.5500 - 3.7300 1.00 4135 237 0.1317 0.1350 REMARK 3 2 3.7300 - 2.9600 1.00 4129 242 0.1220 0.1546 REMARK 3 3 2.9600 - 2.5900 1.00 4108 244 0.1262 0.1417 REMARK 3 4 2.5800 - 2.3500 1.00 4137 236 0.1167 0.1392 REMARK 3 5 2.3500 - 2.1800 1.00 4140 244 0.1104 0.1393 REMARK 3 6 2.1800 - 2.0500 1.00 4151 209 0.1109 0.1330 REMARK 3 7 2.0500 - 1.9500 1.00 4144 249 0.1123 0.1417 REMARK 3 8 1.9500 - 1.8600 1.00 4117 230 0.1108 0.1375 REMARK 3 9 1.8600 - 1.7900 1.00 4180 203 0.1106 0.1397 REMARK 3 10 1.7900 - 1.7300 1.00 4118 203 0.1059 0.1442 REMARK 3 11 1.7300 - 1.6800 1.00 4208 222 0.1039 0.1536 REMARK 3 12 1.6800 - 1.6300 1.00 4156 190 0.1057 0.1404 REMARK 3 13 1.6300 - 1.5900 1.00 4178 195 0.1065 0.1538 REMARK 3 14 1.5900 - 1.5500 1.00 4146 209 0.1144 0.1594 REMARK 3 15 1.5500 - 1.5100 1.00 4169 192 0.1138 0.1718 REMARK 3 16 1.5100 - 1.4800 1.00 4166 206 0.1325 0.1569 REMARK 3 17 1.4800 - 1.4500 1.00 4157 205 0.1325 0.1793 REMARK 3 18 1.4500 - 1.4200 1.00 4156 213 0.1394 0.2033 REMARK 3 19 1.4200 - 1.4000 1.00 4157 232 0.1448 0.1935 REMARK 3 20 1.4000 - 1.3700 1.00 4167 192 0.1524 0.1708 REMARK 3 21 1.3700 - 1.3500 1.00 4150 233 0.1568 0.1997 REMARK 3 22 1.3500 - 1.3300 1.00 4103 261 0.1580 0.1959 REMARK 3 23 1.3300 - 1.3100 1.00 4187 199 0.1667 0.1913 REMARK 3 24 1.3100 - 1.2900 1.00 4080 247 0.1905 0.2263 REMARK 3 25 1.2900 - 1.2800 1.00 4136 230 0.1994 0.2358 REMARK 3 26 1.2800 - 1.2600 1.00 4162 220 0.1912 0.2285 REMARK 3 27 1.2600 - 1.2400 1.00 4156 194 0.1989 0.2444 REMARK 3 28 1.2400 - 1.2300 1.00 4056 224 0.2082 0.2223 REMARK 3 29 1.2300 - 1.2100 1.00 4245 215 0.2136 0.2416 REMARK 3 30 1.2100 - 1.2000 1.00 4103 241 0.2133 0.2659 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.107 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.148 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4008 REMARK 3 ANGLE : 1.110 5482 REMARK 3 CHIRALITY : 0.083 620 REMARK 3 PLANARITY : 0.013 736 REMARK 3 DIHEDRAL : 6.934 598 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7OBU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-APR-21. REMARK 100 THE DEPOSITION ID IS D_1292115299. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : OXFORF-FNB REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : BIOMOL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 131067 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 59.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : 0.15100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 6.57 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 59.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 10.20 REMARK 200 R MERGE FOR SHELL (I) : 0.08200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6R62 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES, SODIUM CITRATE, PH 7, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.54700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.52307 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 74.13133 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 35.54700 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 20.52307 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 74.13133 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 35.54700 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 20.52307 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 74.13133 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 41.04614 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 148.26267 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 41.04614 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 148.26267 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 41.04614 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 148.26267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 24620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -202.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 35.54700 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 61.56921 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -35.54700 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 61.56921 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 686 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 703 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 711 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 713 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 714 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 417 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 601 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 670 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 678 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 682 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 697 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 703 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 704 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 705 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 401 O HOH B 559 1.79 REMARK 500 OE1 GLU B 136 O HOH B 401 1.81 REMARK 500 O HOH B 563 O HOH B 650 1.86 REMARK 500 NH2 ARG A 197 O HOH A 401 1.91 REMARK 500 NH1 ARG A 197 O HOH A 402 1.96 REMARK 500 O HOH A 403 O HOH A 607 2.06 REMARK 500 O HOH B 427 O HOH B 556 2.11 REMARK 500 O HOH A 541 O HOH A 668 2.11 REMARK 500 O HOH A 648 O HOH A 690 2.13 REMARK 500 O HOH A 664 O HOH A 688 2.13 REMARK 500 O HOH A 619 O HOH A 652 2.14 REMARK 500 O HOH B 520 O HOH B 596 2.15 REMARK 500 O HOH B 587 O HOH B 651 2.16 REMARK 500 O HOH B 587 O HOH B 634 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 401 O HOH A 708 2655 1.94 REMARK 500 O HOH A 653 O HOH A 688 2655 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 34 50.00 -80.56 REMARK 500 GLN A 43 -63.54 -102.86 REMARK 500 HIS A 44 59.84 -101.34 REMARK 500 GLU A 145 15.89 -147.22 REMARK 500 GLN B 43 -62.26 -96.38 REMARK 500 HIS B 44 67.25 -105.10 REMARK 500 GLU B 145 21.91 -152.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 712 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A 713 DISTANCE = 6.65 ANGSTROMS REMARK 525 HOH A 714 DISTANCE = 6.76 ANGSTROMS REMARK 525 HOH B 704 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH B 705 DISTANCE = 6.62 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 302 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 31 O REMARK 620 2 LEU A 33 O 79.2 REMARK 620 3 TYR A 35 O 104.5 86.8 REMARK 620 4 GLY A 63 O 88.3 166.8 100.4 REMARK 620 5 HOH A 520 O 77.9 105.0 168.2 68.0 REMARK 620 6 HOH A 631 O 171.8 94.8 80.5 97.3 98.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 116 OG REMARK 620 2 GLU A 145 OE1 47.7 REMARK 620 3 ASP A 171 OD2 46.6 3.7 REMARK 620 4 HOH A 425 O 49.4 4.7 2.9 REMARK 620 5 HOH A 461 O 43.9 5.9 2.9 5.5 REMARK 620 6 HOH A 573 O 51.7 5.5 5.0 2.3 7.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 303 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 31 O REMARK 620 2 LEU B 33 O 78.6 REMARK 620 3 TYR B 35 O 103.4 87.2 REMARK 620 4 GLY B 63 O 88.0 166.3 99.1 REMARK 620 5 HOH B 532 O 79.1 106.2 166.6 67.7 REMARK 620 6 HOH B 622 O 171.9 95.0 80.9 98.0 98.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 116 OG REMARK 620 2 GLU B 145 OE1 46.9 REMARK 620 3 ASP B 171 OD2 46.3 3.8 REMARK 620 4 HOH B 442 O 43.7 5.2 2.6 REMARK 620 5 HOH B 445 O 48.7 4.7 2.5 5.0 REMARK 620 6 HOH B 566 O 51.4 5.8 5.0 7.6 2.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 145 OE1 REMARK 620 2 ASP B 171 OD2 94.9 REMARK 620 3 3PY B 301 O1 91.6 89.4 REMARK 620 4 3PY B 301 O3 100.4 162.2 81.2 REMARK 620 5 HOH B 442 O 90.8 95.7 174.1 93.1 REMARK 620 6 HOH B 471 O 175.5 82.1 91.7 83.1 86.1 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6R62 RELATED DB: PDB REMARK 900 RELATED ID: 7O5I RELATED DB: PDB REMARK 900 RELATED ID: 7NUJ RELATED DB: PDB REMARK 900 RELATED ID: 7O5R RELATED DB: PDB REMARK 900 RELATED ID: 7O9R RELATED DB: PDB REMARK 900 RELATED ID: 7O5V RELATED DB: PDB REMARK 900 RELATED ID: 7NR1 RELATED DB: PDB REMARK 900 RELATED ID: 7NNK RELATED DB: PDB REMARK 900 RELATED ID: 7O5W RELATED DB: PDB REMARK 900 RELATED ID: 7O87 RELATED DB: PDB DBREF 7OBU A 2 251 UNP A5VH82 A5VH82_SPHWW 2 251 DBREF 7OBU B 2 251 UNP A5VH82 A5VH82_SPHWW 2 251 SEQADV 7OBU HIS A 0 UNP A5VH82 EXPRESSION TAG SEQADV 7OBU HIS A 1 UNP A5VH82 EXPRESSION TAG SEQADV 7OBU TRP A 210 UNP A5VH82 PHE 210 ENGINEERED MUTATION SEQADV 7OBU HIS B 0 UNP A5VH82 EXPRESSION TAG SEQADV 7OBU HIS B 1 UNP A5VH82 EXPRESSION TAG SEQADV 7OBU TRP B 210 UNP A5VH82 PHE 210 ENGINEERED MUTATION SEQRES 1 A 252 HIS HIS ASN LYS VAL ARG THR CYS TRP ASN GLU GLY ARG SEQRES 2 A 252 PRO ALA LEU ALA GLY TRP LEU GLN LEU PRO GLY THR LEU SEQRES 3 A 252 HIS ALA GLU ALA LEU ALA ARG LEU ASP TYR ASP ALA VAL SEQRES 4 A 252 VAL ILE ASP MET GLN HIS SER PRO ILE ASP PHE GLY GLN SEQRES 5 A 252 VAL ALA PRO MET LEU ILE ALA ILE GLU LEU GLY GLY ALA SEQRES 6 A 252 GLU PRO PHE VAL ARG THR GLN VAL ASN ASP PRO SER ASP SEQRES 7 A 252 ILE MET LYS LEU LEU ASP ALA GLY ALA TYR GLY ILE ILE SEQRES 8 A 252 ALA PRO MET VAL ASN THR ARG ALA GLU ALA GLN THR LEU SEQRES 9 A 252 ALA SER ALA LEU HIS TYR SER PRO ARG GLY LEU ARG SER SEQRES 10 A 252 PHE GLY PRO ARG ARG PRO SER LEU ARG TYR GLY SER GLY SEQRES 11 A 252 TYR LEU ALA GLN ALA SER GLU THR VAL VAL GLY LEU ALA SEQRES 12 A 252 MET ILE GLU THR ARG GLU ALA LEU ALA ASN ILE ASP GLU SEQRES 13 A 252 ILE LEU SER VAL ASP GLY ILE ASP GLY VAL PHE ILE GLY SEQRES 14 A 252 PRO THR ASP LEU ALA LEU ASP LEU GLY HIS ALA PRO LEU SEQRES 15 A 252 VAL ASP THR GLU GLU ALA GLU VAL VAL SER ALA ILE ALA SEQRES 16 A 252 HIS VAL ARG GLU ARG ALA HIS ALA ALA GLY LYS ARG VAL SEQRES 17 A 252 GLY ILE TRP CYS GLY SER GLY GLY PHE ALA ARG VAL LYS SEQRES 18 A 252 LEU ALA GLU GLY PHE ASP PHE VAL THR ALA ALA PRO ASP SEQRES 19 A 252 LEU ALA MET LEU SER ALA ALA ALA ARG GLN VAL ILE ALA SEQRES 20 A 252 ASP ALA ARG ALA LEU SEQRES 1 B 252 HIS HIS ASN LYS VAL ARG THR CYS TRP ASN GLU GLY ARG SEQRES 2 B 252 PRO ALA LEU ALA GLY TRP LEU GLN LEU PRO GLY THR LEU SEQRES 3 B 252 HIS ALA GLU ALA LEU ALA ARG LEU ASP TYR ASP ALA VAL SEQRES 4 B 252 VAL ILE ASP MET GLN HIS SER PRO ILE ASP PHE GLY GLN SEQRES 5 B 252 VAL ALA PRO MET LEU ILE ALA ILE GLU LEU GLY GLY ALA SEQRES 6 B 252 GLU PRO PHE VAL ARG THR GLN VAL ASN ASP PRO SER ASP SEQRES 7 B 252 ILE MET LYS LEU LEU ASP ALA GLY ALA TYR GLY ILE ILE SEQRES 8 B 252 ALA PRO MET VAL ASN THR ARG ALA GLU ALA GLN THR LEU SEQRES 9 B 252 ALA SER ALA LEU HIS TYR SER PRO ARG GLY LEU ARG SER SEQRES 10 B 252 PHE GLY PRO ARG ARG PRO SER LEU ARG TYR GLY SER GLY SEQRES 11 B 252 TYR LEU ALA GLN ALA SER GLU THR VAL VAL GLY LEU ALA SEQRES 12 B 252 MET ILE GLU THR ARG GLU ALA LEU ALA ASN ILE ASP GLU SEQRES 13 B 252 ILE LEU SER VAL ASP GLY ILE ASP GLY VAL PHE ILE GLY SEQRES 14 B 252 PRO THR ASP LEU ALA LEU ASP LEU GLY HIS ALA PRO LEU SEQRES 15 B 252 VAL ASP THR GLU GLU ALA GLU VAL VAL SER ALA ILE ALA SEQRES 16 B 252 HIS VAL ARG GLU ARG ALA HIS ALA ALA GLY LYS ARG VAL SEQRES 17 B 252 GLY ILE TRP CYS GLY SER GLY GLY PHE ALA ARG VAL LYS SEQRES 18 B 252 LEU ALA GLU GLY PHE ASP PHE VAL THR ALA ALA PRO ASP SEQRES 19 B 252 LEU ALA MET LEU SER ALA ALA ALA ARG GLN VAL ILE ALA SEQRES 20 B 252 ASP ALA ARG ALA LEU HET MG A 301 1 HET K A 302 1 HET 3PY B 301 10 HET MG B 302 2 HET K B 303 1 HETNAM MG MAGNESIUM ION HETNAM K POTASSIUM ION HETNAM 3PY 3-HYDROXYPYRUVIC ACID FORMUL 3 MG 2(MG 2+) FORMUL 4 K 2(K 1+) FORMUL 5 3PY C3 H4 O4 FORMUL 8 HOH *619(H2 O) HELIX 1 AA1 ASN A 2 GLU A 10 1 9 HELIX 2 AA2 THR A 24 ARG A 32 1 9 HELIX 3 AA3 ASP A 48 GLY A 63 1 16 HELIX 4 AA4 ASP A 74 ALA A 84 1 11 HELIX 5 AA5 THR A 96 HIS A 108 1 13 HELIX 6 AA6 ARG A 121 GLY A 127 1 7 HELIX 7 AA7 GLY A 129 ALA A 134 1 6 HELIX 8 AA8 SER A 135 VAL A 138 5 4 HELIX 9 AA9 THR A 146 ASN A 152 1 7 HELIX 10 AB1 ASN A 152 SER A 158 1 7 HELIX 11 AB2 GLY A 168 LEU A 176 1 9 HELIX 12 AB3 GLU A 186 ALA A 203 1 18 HELIX 13 AB4 SER A 213 GLU A 223 1 11 HELIX 14 AB5 ASP A 233 ALA A 250 1 18 HELIX 15 AB6 ASN B 2 GLU B 10 1 9 HELIX 16 AB7 THR B 24 ARG B 32 1 9 HELIX 17 AB8 ASP B 48 GLY B 63 1 16 HELIX 18 AB9 ASP B 74 ALA B 84 1 11 HELIX 19 AC1 THR B 96 HIS B 108 1 13 HELIX 20 AC2 PRO B 119 GLY B 127 1 9 HELIX 21 AC3 GLY B 129 VAL B 138 1 10 HELIX 22 AC4 THR B 146 ASN B 152 1 7 HELIX 23 AC5 ASN B 152 SER B 158 1 7 HELIX 24 AC6 GLY B 168 LEU B 176 1 9 HELIX 25 AC7 GLU B 186 ALA B 203 1 18 HELIX 26 AC8 SER B 213 GLY B 224 1 12 HELIX 27 AC9 ASP B 233 ALA B 250 1 18 SHEET 1 AA1 9 ALA A 14 LEU A 19 0 SHEET 2 AA1 9 ALA A 37 ASP A 41 1 O ASP A 41 N LEU A 19 SHEET 3 AA1 9 GLU A 65 ARG A 69 1 O PHE A 67 N VAL A 38 SHEET 4 AA1 9 GLY A 88 ALA A 91 1 O ILE A 90 N VAL A 68 SHEET 5 AA1 9 VAL A 139 ILE A 144 1 O LEU A 141 N ILE A 89 SHEET 6 AA1 9 GLY A 164 ILE A 167 1 O PHE A 166 N ALA A 142 SHEET 7 AA1 9 ARG A 206 TRP A 210 1 O GLY A 208 N ILE A 167 SHEET 8 AA1 9 PHE A 227 PRO A 232 1 O THR A 229 N ILE A 209 SHEET 9 AA1 9 ALA A 14 LEU A 19 1 N ALA A 16 O VAL A 228 SHEET 1 AA2 9 ALA B 14 LEU B 19 0 SHEET 2 AA2 9 ALA B 37 ASP B 41 1 O VAL B 39 N LEU B 19 SHEET 3 AA2 9 GLU B 65 ARG B 69 1 O PHE B 67 N VAL B 38 SHEET 4 AA2 9 GLY B 88 ALA B 91 1 O ILE B 90 N VAL B 68 SHEET 5 AA2 9 VAL B 139 ILE B 144 1 O LEU B 141 N ILE B 89 SHEET 6 AA2 9 GLY B 164 ILE B 167 1 O PHE B 166 N ALA B 142 SHEET 7 AA2 9 ARG B 206 TRP B 210 1 O GLY B 208 N ILE B 167 SHEET 8 AA2 9 PHE B 227 PRO B 232 1 O THR B 229 N ILE B 209 SHEET 9 AA2 9 ALA B 14 LEU B 19 1 N ALA B 16 O VAL B 228 LINK O ALA A 31 K K A 302 1555 1555 2.62 LINK O LEU A 33 K K A 302 1555 1555 2.67 LINK O TYR A 35 K K A 302 1555 1555 2.77 LINK O GLY A 63 K K A 302 1555 1555 2.88 LINK OG SER A 116 MG MG A 301 1555 3565 2.10 LINK OE1 GLU A 145 MG MG A 301 1555 1555 2.06 LINK OD2 ASP A 171 MG MG A 301 1555 1555 1.97 LINK MG MG A 301 O HOH A 425 1555 1555 2.07 LINK MG MG A 301 O HOH A 461 1555 1555 2.05 LINK MG MG A 301 O HOH A 573 1555 1555 2.12 LINK K K A 302 O HOH A 520 1555 1555 2.78 LINK K K A 302 O HOH A 631 1555 1555 2.72 LINK O ALA B 31 K K B 303 1555 1555 2.61 LINK O LEU B 33 K K B 303 1555 1555 2.70 LINK O TYR B 35 K K B 303 1555 1555 2.74 LINK O GLY B 63 K K B 303 1555 1555 2.95 LINK OG SER B 116 MG B MG B 302 1555 2665 2.11 LINK OE1AGLU B 145 MG A MG B 302 1555 1555 2.06 LINK OE1BGLU B 145 MG B MG B 302 1555 1555 2.04 LINK OD2 ASP B 171 MG A MG B 302 1555 1555 2.05 LINK OD2 ASP B 171 MG B MG B 302 1555 1555 1.82 LINK O1 3PY B 301 MG A MG B 302 1555 1555 2.08 LINK O3 3PY B 301 MG A MG B 302 1555 1555 2.02 LINK MG A MG B 302 O HOH B 442 1555 1555 1.96 LINK MG B MG B 302 O HOH B 442 1555 1555 1.97 LINK MG B MG B 302 O BHOH B 445 1555 1555 2.14 LINK MG A MG B 302 O HOH B 471 1555 1555 2.11 LINK MG B MG B 302 O BHOH B 566 1555 1555 2.23 LINK K K B 303 O HOH B 532 1555 1555 2.82 LINK K K B 303 O HOH B 622 1555 1555 2.63 CISPEP 1 SER A 110 PRO A 111 0 6.01 CISPEP 2 ALA A 230 ALA A 231 0 -13.83 CISPEP 3 SER B 110 PRO B 111 0 9.77 CISPEP 4 ALA B 230 ALA B 231 0 -13.18 CRYST1 71.094 71.094 222.394 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014066 0.008121 0.000000 0.00000 SCALE2 0.000000 0.016242 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004497 0.00000