HEADER RNA BINDING PROTEIN 28-APR-21 7OCX TITLE CRYSTAL STRUCTURE OF THE PID-3 TOFU-6 RRM DOMAIN COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN PID-3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PIRNA BIOGENESIS AND CHROMOSOME SEGREGATION PROTEIN 1,PIRNA- COMPND 5 INDUCED SILENCING DEFECTIVE PROTEIN 3; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: EMBRYONIC DEVELOPMENTAL PROTEIN TOFU-6; COMPND 9 CHAIN: C, D; COMPND 10 SYNONYM: 21U-RNA BIOGENESIS FOULED UP PROTEIN 6,MATERNAL EFFECT COMPND 11 LETHAL PROTEIN 47; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_TAXID: 6239; SOURCE 4 GENE: PID-3, PICS-1, Y23H5A.3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 9 ORGANISM_TAXID: 6239; SOURCE 10 GENE: TOFU-6, MEL-47, EEED8.1; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PIRNA BIOGENESIS 21U RNA RNA RECOGNITION MOTIF RNA BINDING, RNA KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.BASQUIN,R.F.KETTING,S.FALK REVDAT 2 06-OCT-21 7OCX 1 JRNL REVDAT 1 25-AUG-21 7OCX 0 JRNL AUTH C.PEREZ-BORRAJERO,N.PODVALNAYA,K.HOLLEIS,R.LICHTENBERGER, JRNL AUTH 2 E.KARAULANOV,B.SIMON,J.BASQUIN,J.HENNIG,R.F.KETTING,S.FALK JRNL TITL STRUCTURAL BASIS OF PETISCO COMPLEX ASSEMBLY DURING PIRNA JRNL TITL 2 BIOGENESIS IN C. ELEGANS . JRNL REF GENES DEV. V. 35 1304 2021 JRNL REFN ISSN 0890-9369 JRNL PMID 34413138 JRNL DOI 10.1101/GAD.348648.121 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.1_4122 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 43052 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 2157 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.6800 - 4.1900 1.00 2996 157 0.1723 0.1956 REMARK 3 2 4.1900 - 3.3300 1.00 2854 151 0.1608 0.1963 REMARK 3 3 3.3300 - 2.9100 1.00 2799 148 0.1923 0.2165 REMARK 3 4 2.9100 - 2.6400 1.00 2805 148 0.1958 0.2566 REMARK 3 5 2.6400 - 2.4500 1.00 2763 145 0.2083 0.2453 REMARK 3 6 2.4500 - 2.3100 1.00 2781 147 0.1892 0.2482 REMARK 3 7 2.3100 - 2.1900 1.00 2752 145 0.1935 0.2555 REMARK 3 8 2.1900 - 2.1000 1.00 2764 146 0.1938 0.2631 REMARK 3 9 2.1000 - 2.0200 1.00 2750 145 0.2127 0.2652 REMARK 3 10 2.0200 - 1.9500 1.00 2765 145 0.2435 0.2603 REMARK 3 11 1.9500 - 1.8900 1.00 2722 143 0.2774 0.3364 REMARK 3 12 1.8900 - 1.8300 1.00 2747 144 0.2901 0.3147 REMARK 3 13 1.8300 - 1.7800 1.00 2759 145 0.3269 0.3573 REMARK 3 14 1.7800 - 1.7400 0.94 2580 138 0.3975 0.3964 REMARK 3 15 1.7400 - 1.7000 0.76 2058 110 0.4849 0.5156 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.083 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2629 REMARK 3 ANGLE : 1.092 3562 REMARK 3 CHIRALITY : 0.062 395 REMARK 3 PLANARITY : 0.011 470 REMARK 3 DIHEDRAL : 5.773 355 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 209 THROUGH 223 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.1457 30.8272 58.9001 REMARK 3 T TENSOR REMARK 3 T11: 0.2761 T22: 0.2686 REMARK 3 T33: 0.4110 T12: 0.0665 REMARK 3 T13: 0.0289 T23: -0.0176 REMARK 3 L TENSOR REMARK 3 L11: 2.8544 L22: 2.7319 REMARK 3 L33: 7.1583 L12: 1.8642 REMARK 3 L13: -0.6133 L23: 2.5039 REMARK 3 S TENSOR REMARK 3 S11: -0.0007 S12: 0.1181 S13: -0.0597 REMARK 3 S21: -0.1693 S22: 0.2134 S23: -0.4764 REMARK 3 S31: 0.0151 S32: 0.4476 S33: -0.2440 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 224 THROUGH 274 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.9967 22.3668 64.1840 REMARK 3 T TENSOR REMARK 3 T11: 0.3225 T22: 0.2161 REMARK 3 T33: 0.4033 T12: 0.0345 REMARK 3 T13: -0.0378 T23: -0.0273 REMARK 3 L TENSOR REMARK 3 L11: 2.1500 L22: 1.8205 REMARK 3 L33: 4.8466 L12: 0.0968 REMARK 3 L13: 0.0190 L23: -1.0057 REMARK 3 S TENSOR REMARK 3 S11: 0.0679 S12: 0.0650 S13: -0.2142 REMARK 3 S21: -0.1753 S22: 0.0471 S23: -0.0180 REMARK 3 S31: 0.5187 S32: 0.0791 S33: -0.1065 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 7 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4892 45.7974 43.9959 REMARK 3 T TENSOR REMARK 3 T11: 0.3095 T22: 0.3072 REMARK 3 T33: 0.3104 T12: -0.0063 REMARK 3 T13: -0.0531 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 2.4810 L22: 8.9422 REMARK 3 L33: 5.1992 L12: 0.1985 REMARK 3 L13: 0.8225 L23: -2.8105 REMARK 3 S TENSOR REMARK 3 S11: -0.0249 S12: 0.1443 S13: 0.1802 REMARK 3 S21: -0.8799 S22: 0.0483 S23: 0.1364 REMARK 3 S31: 0.1224 S32: -0.2911 S33: -0.0026 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 37 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.5824 47.5347 42.1470 REMARK 3 T TENSOR REMARK 3 T11: 0.5161 T22: 0.3214 REMARK 3 T33: 0.4049 T12: 0.0534 REMARK 3 T13: 0.0710 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 6.7415 L22: 4.0710 REMARK 3 L33: 7.6720 L12: 2.1632 REMARK 3 L13: -1.9754 L23: -4.6360 REMARK 3 S TENSOR REMARK 3 S11: 0.3535 S12: 0.4421 S13: 0.2727 REMARK 3 S21: -0.7481 S22: -0.3283 S23: 0.0238 REMARK 3 S31: -0.2326 S32: 0.4516 S33: -0.0010 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 63 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.8635 40.9711 40.4765 REMARK 3 T TENSOR REMARK 3 T11: 0.6204 T22: 0.4860 REMARK 3 T33: 0.7466 T12: -0.0071 REMARK 3 T13: -0.3131 T23: 0.0663 REMARK 3 L TENSOR REMARK 3 L11: 2.9027 L22: 6.7555 REMARK 3 L33: 3.8904 L12: -3.9058 REMARK 3 L13: 2.9175 L23: -3.6689 REMARK 3 S TENSOR REMARK 3 S11: 0.4071 S12: 0.1441 S13: -0.9222 REMARK 3 S21: -1.3314 S22: 0.3584 S23: 2.2778 REMARK 3 S31: 0.3566 S32: -0.7596 S33: -0.6310 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 90 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.2223 31.2792 41.7269 REMARK 3 T TENSOR REMARK 3 T11: 0.7686 T22: 0.5093 REMARK 3 T33: 0.6695 T12: 0.1792 REMARK 3 T13: 0.2304 T23: 0.0540 REMARK 3 L TENSOR REMARK 3 L11: 5.9281 L22: 5.7026 REMARK 3 L33: 7.4587 L12: -5.7464 REMARK 3 L13: 6.6040 L23: -6.5297 REMARK 3 S TENSOR REMARK 3 S11: 0.3367 S12: 0.5962 S13: 0.2454 REMARK 3 S21: -0.6421 S22: -0.5775 S23: -0.2268 REMARK 3 S31: 0.4372 S32: 0.4834 S33: 0.3242 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 8 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.8962 34.1412 85.0252 REMARK 3 T TENSOR REMARK 3 T11: 0.6092 T22: 0.3196 REMARK 3 T33: 0.4397 T12: -0.0825 REMARK 3 T13: -0.0613 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 2.1089 L22: 3.3311 REMARK 3 L33: 3.8459 L12: 1.1945 REMARK 3 L13: -0.3530 L23: -1.0444 REMARK 3 S TENSOR REMARK 3 S11: 0.1013 S12: -0.3648 S13: 0.0730 REMARK 3 S21: 1.8949 S22: 0.4273 S23: -0.7230 REMARK 3 S31: -0.4900 S32: -0.0939 S33: -0.4735 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 14 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.0604 16.8033 84.6728 REMARK 3 T TENSOR REMARK 3 T11: 0.3912 T22: 0.2728 REMARK 3 T33: 0.3537 T12: -0.0572 REMARK 3 T13: -0.1310 T23: 0.0488 REMARK 3 L TENSOR REMARK 3 L11: 3.3837 L22: 6.8091 REMARK 3 L33: 2.5851 L12: 0.0661 REMARK 3 L13: -1.1251 L23: -0.9071 REMARK 3 S TENSOR REMARK 3 S11: 0.2967 S12: -0.4089 S13: -0.2639 REMARK 3 S21: 0.9552 S22: -0.2859 S23: -0.6136 REMARK 3 S31: 0.0394 S32: 0.0383 S33: -0.0105 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 45 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.5567 10.9605 98.6253 REMARK 3 T TENSOR REMARK 3 T11: 1.3753 T22: 0.5493 REMARK 3 T33: 0.7469 T12: -0.1976 REMARK 3 T13: -0.4046 T23: 0.1419 REMARK 3 L TENSOR REMARK 3 L11: 2.5849 L22: 2.5904 REMARK 3 L33: 4.6068 L12: -1.2945 REMARK 3 L13: 0.8474 L23: 0.5238 REMARK 3 S TENSOR REMARK 3 S11: 0.1885 S12: -0.8142 S13: -0.6900 REMARK 3 S21: 0.4641 S22: -0.8828 S23: 0.3574 REMARK 3 S31: 1.3149 S32: -0.4240 S33: 0.2154 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 53 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.2372 24.6666 84.2235 REMARK 3 T TENSOR REMARK 3 T11: 0.4167 T22: 0.2121 REMARK 3 T33: 0.3077 T12: -0.0529 REMARK 3 T13: -0.0041 T23: -0.0357 REMARK 3 L TENSOR REMARK 3 L11: 3.1281 L22: 8.8785 REMARK 3 L33: 7.4479 L12: 2.8619 REMARK 3 L13: -0.4696 L23: -5.0283 REMARK 3 S TENSOR REMARK 3 S11: 0.5517 S12: 0.0119 S13: 0.1456 REMARK 3 S21: 1.0735 S22: -0.3433 S23: 0.2387 REMARK 3 S31: -0.0058 S32: -0.0177 S33: -0.2667 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 73 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.7676 19.0415 90.6048 REMARK 3 T TENSOR REMARK 3 T11: 0.7189 T22: 0.3805 REMARK 3 T33: 0.4599 T12: -0.1295 REMARK 3 T13: 0.1144 T23: -0.0246 REMARK 3 L TENSOR REMARK 3 L11: 5.4026 L22: 2.2879 REMARK 3 L33: 5.1217 L12: 2.5623 REMARK 3 L13: 2.0376 L23: 2.3904 REMARK 3 S TENSOR REMARK 3 S11: 0.7152 S12: -0.0854 S13: 0.5527 REMARK 3 S21: 2.1191 S22: -0.5800 S23: 0.9710 REMARK 3 S31: -0.0010 S32: -0.1057 S33: -0.1522 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 198 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.7637 50.6457 62.2243 REMARK 3 T TENSOR REMARK 3 T11: 0.2051 T22: 0.2388 REMARK 3 T33: 0.3791 T12: -0.0044 REMARK 3 T13: -0.0118 T23: -0.0165 REMARK 3 L TENSOR REMARK 3 L11: 7.3697 L22: 8.8456 REMARK 3 L33: 4.9759 L12: 6.9016 REMARK 3 L13: -5.8866 L23: -6.3383 REMARK 3 S TENSOR REMARK 3 S11: -0.0914 S12: 0.3680 S13: 0.1749 REMARK 3 S21: -0.2599 S22: 0.3321 S23: 0.0178 REMARK 3 S31: -0.1873 S32: -0.1392 S33: -0.1425 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 209 THROUGH 223 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.7901 37.8981 72.1669 REMARK 3 T TENSOR REMARK 3 T11: 0.2636 T22: 0.2107 REMARK 3 T33: 0.3427 T12: 0.0002 REMARK 3 T13: -0.0290 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 2.8491 L22: 3.9055 REMARK 3 L33: 8.5295 L12: 0.6469 REMARK 3 L13: 1.1783 L23: 5.0730 REMARK 3 S TENSOR REMARK 3 S11: 0.2063 S12: -0.1318 S13: -0.1345 REMARK 3 S21: 0.3415 S22: 0.0901 S23: -0.3144 REMARK 3 S31: 0.6411 S32: 0.1034 S33: -0.3080 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 224 THROUGH 256 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.4628 44.9604 62.9138 REMARK 3 T TENSOR REMARK 3 T11: 0.2245 T22: 0.2096 REMARK 3 T33: 0.3917 T12: 0.0053 REMARK 3 T13: -0.0039 T23: -0.0142 REMARK 3 L TENSOR REMARK 3 L11: 2.8213 L22: 1.7176 REMARK 3 L33: 6.9550 L12: 0.0964 REMARK 3 L13: 1.2755 L23: -0.3422 REMARK 3 S TENSOR REMARK 3 S11: -0.0256 S12: 0.1981 S13: 0.0051 REMARK 3 S21: -0.0102 S22: -0.0044 S23: 0.0043 REMARK 3 S31: -0.1210 S32: 0.0547 S33: 0.0200 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 257 THROUGH 267 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.4369 42.3997 76.1951 REMARK 3 T TENSOR REMARK 3 T11: 0.3573 T22: 0.3162 REMARK 3 T33: 0.4187 T12: 0.0366 REMARK 3 T13: 0.0716 T23: -0.0336 REMARK 3 L TENSOR REMARK 3 L11: 2.3307 L22: 4.4718 REMARK 3 L33: 6.9024 L12: -1.7504 REMARK 3 L13: 2.0421 L23: -5.6057 REMARK 3 S TENSOR REMARK 3 S11: 0.0090 S12: -0.0768 S13: -0.2480 REMARK 3 S21: 0.5407 S22: 0.2328 S23: 0.5240 REMARK 3 S31: -0.2136 S32: -0.5945 S33: -0.3944 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 268 THROUGH 274 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.9389 53.4536 66.1973 REMARK 3 T TENSOR REMARK 3 T11: 0.3549 T22: 0.3368 REMARK 3 T33: 0.7000 T12: 0.0198 REMARK 3 T13: 0.0537 T23: 0.0084 REMARK 3 L TENSOR REMARK 3 L11: 3.5318 L22: 2.4963 REMARK 3 L33: 2.7567 L12: 2.8654 REMARK 3 L13: -3.0810 L23: -2.5646 REMARK 3 S TENSOR REMARK 3 S11: 0.3877 S12: -0.2053 S13: 2.2959 REMARK 3 S21: 0.1668 S22: 0.5392 S23: 0.6724 REMARK 3 S31: -0.4243 S32: 0.1564 S33: -1.0031 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 194 THROUGH 200 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.7075 24.5181 72.3465 REMARK 3 T TENSOR REMARK 3 T11: 0.7818 T22: 0.6420 REMARK 3 T33: 0.7071 T12: 0.1547 REMARK 3 T13: -0.1298 T23: 0.0299 REMARK 3 L TENSOR REMARK 3 L11: 0.1370 L22: 4.5157 REMARK 3 L33: 6.8408 L12: 0.7360 REMARK 3 L13: -0.9074 L23: -5.5649 REMARK 3 S TENSOR REMARK 3 S11: -0.4757 S12: 0.2015 S13: -0.2025 REMARK 3 S21: 2.4116 S22: 0.2623 S23: -0.8402 REMARK 3 S31: -2.2838 S32: -1.2732 S33: 0.3019 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 201 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.1744 18.9693 67.5746 REMARK 3 T TENSOR REMARK 3 T11: 0.4240 T22: 0.3077 REMARK 3 T33: 0.4506 T12: 0.1099 REMARK 3 T13: -0.0197 T23: -0.0533 REMARK 3 L TENSOR REMARK 3 L11: 6.0298 L22: 7.5427 REMARK 3 L33: 4.1412 L12: -3.1786 REMARK 3 L13: 4.2282 L23: -4.5517 REMARK 3 S TENSOR REMARK 3 S11: 0.1458 S12: 0.4288 S13: -0.2524 REMARK 3 S21: -0.3780 S22: -0.3219 S23: -0.4656 REMARK 3 S31: 0.8621 S32: 1.6001 S33: 0.0731 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7OCX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-APR-21. REMARK 100 THE DEPOSITION ID IS D_1292115451. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00, 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43394 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 41.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : 0.08550 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.2400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.560 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE PH 5.0 0.2 M REMARK 280 SODIUM CHLORIDE 17 % PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.99000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.29250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.00100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.29250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.99000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.00100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 191 REMARK 465 PRO A 192 REMARK 465 ASP A 193 REMARK 465 SER A 194 REMARK 465 MET A 195 REMARK 465 PRO A 196 REMARK 465 ARG A 197 REMARK 465 GLY B 191 REMARK 465 PRO B 192 REMARK 465 ASP B 193 REMARK 465 GLY C -3 REMARK 465 PRO C -2 REMARK 465 ASP C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 SER C 3 REMARK 465 SER C 4 REMARK 465 SER C 5 REMARK 465 THR C 6 REMARK 465 GLY D -3 REMARK 465 PRO D -2 REMARK 465 ASP D -1 REMARK 465 SER D 0 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 SER D 3 REMARK 465 SER D 4 REMARK 465 SER D 5 REMARK 465 THR D 6 REMARK 465 ALA D 7 REMARK 465 ASN D 92 REMARK 465 VAL D 93 REMARK 465 GLY D 94 REMARK 465 GLY D 95 REMARK 465 SER D 96 REMARK 465 LEU D 97 REMARK 465 LEU D 98 REMARK 465 PRO D 99 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 274 CG1 CG2 REMARK 470 SER B 194 OG REMARK 470 ARG B 197 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 274 CG1 CG2 REMARK 470 LYS C 22 CG CD CE NZ REMARK 470 GLN C 52 CG CD OE1 NE2 REMARK 470 ASN C 74 CG OD1 ND2 REMARK 470 ASP C 75 CG OD1 OD2 REMARK 470 GLU C 81 CG CD OE1 OE2 REMARK 470 LYS C 86 CG CD CE NZ REMARK 470 LEU C 97 CG CD1 CD2 REMARK 470 TYR D 8 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TYR D 41 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG D 43 CG CD NE CZ NH1 NH2 REMARK 470 ASP D 75 CG OD1 OD2 REMARK 470 LYS D 91 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS C 42 CB CYS C 42 SG -0.118 REMARK 500 CYS D 42 CB CYS D 42 SG -0.132 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER C 48 -177.77 -69.22 REMARK 500 ASP C 75 34.51 70.58 REMARK 500 ASN C 82 27.81 -159.99 REMARK 500 CYS D 42 118.35 -160.26 REMARK 500 ASN D 82 32.56 -141.21 REMARK 500 REMARK 500 REMARK: NULL DBREF 7OCX A 196 274 UNP O76616 PID3_CAEEL 196 274 DBREF 7OCX B 196 274 UNP O76616 PID3_CAEEL 196 274 DBREF 7OCX C 1 99 UNP Q09293 TOFU6_CAEEL 1 99 DBREF 7OCX D 1 99 UNP Q09293 TOFU6_CAEEL 1 99 SEQADV 7OCX GLY A 191 UNP O76616 EXPRESSION TAG SEQADV 7OCX PRO A 192 UNP O76616 EXPRESSION TAG SEQADV 7OCX ASP A 193 UNP O76616 EXPRESSION TAG SEQADV 7OCX SER A 194 UNP O76616 EXPRESSION TAG SEQADV 7OCX MET A 195 UNP O76616 EXPRESSION TAG SEQADV 7OCX GLY B 191 UNP O76616 EXPRESSION TAG SEQADV 7OCX PRO B 192 UNP O76616 EXPRESSION TAG SEQADV 7OCX ASP B 193 UNP O76616 EXPRESSION TAG SEQADV 7OCX SER B 194 UNP O76616 EXPRESSION TAG SEQADV 7OCX MET B 195 UNP O76616 EXPRESSION TAG SEQADV 7OCX GLY C -3 UNP Q09293 EXPRESSION TAG SEQADV 7OCX PRO C -2 UNP Q09293 EXPRESSION TAG SEQADV 7OCX ASP C -1 UNP Q09293 EXPRESSION TAG SEQADV 7OCX SER C 0 UNP Q09293 EXPRESSION TAG SEQADV 7OCX GLY D -3 UNP Q09293 EXPRESSION TAG SEQADV 7OCX PRO D -2 UNP Q09293 EXPRESSION TAG SEQADV 7OCX ASP D -1 UNP Q09293 EXPRESSION TAG SEQADV 7OCX SER D 0 UNP Q09293 EXPRESSION TAG SEQRES 1 A 84 GLY PRO ASP SER MET PRO ARG GLY ALA ASP GLN GLU ASN SEQRES 2 A 84 MET LEU LYS ILE SER GLY TYR PRO GLY MET LEU ASN THR SEQRES 3 A 84 PHE GLY ILE ALA GLN LEU LEU THR PRO TYR ARG VAL ASN SEQRES 4 A 84 GLY ILE THR ILE THR GLY ALA GLN SER ALA VAL VAL ALA SEQRES 5 A 84 LEU GLU ASN LYS PHE GLN VAL TYR GLN ALA VAL GLN ASP SEQRES 6 A 84 PHE ASN GLY LYS LYS LEU ASP ARG ASN HIS LYS LEU GLN SEQRES 7 A 84 VAL SER SER LEU VAL VAL SEQRES 1 B 84 GLY PRO ASP SER MET PRO ARG GLY ALA ASP GLN GLU ASN SEQRES 2 B 84 MET LEU LYS ILE SER GLY TYR PRO GLY MET LEU ASN THR SEQRES 3 B 84 PHE GLY ILE ALA GLN LEU LEU THR PRO TYR ARG VAL ASN SEQRES 4 B 84 GLY ILE THR ILE THR GLY ALA GLN SER ALA VAL VAL ALA SEQRES 5 B 84 LEU GLU ASN LYS PHE GLN VAL TYR GLN ALA VAL GLN ASP SEQRES 6 B 84 PHE ASN GLY LYS LYS LEU ASP ARG ASN HIS LYS LEU GLN SEQRES 7 B 84 VAL SER SER LEU VAL VAL SEQRES 1 C 103 GLY PRO ASP SER MET ALA SER SER SER THR ALA TYR TYR SEQRES 2 C 103 LEU LYS ASP ALA GLY PHE HIS ILE ARG ASN ILE PRO LYS SEQRES 3 C 103 ALA TRP ASN ASP TRP ASN LEU PHE HIS VAL PHE GLN ASN SEQRES 4 C 103 PHE GLY LYS VAL SER TYR CYS ARG VAL VAL GLY GLN SER SEQRES 5 C 103 ASN ASP GLY GLN VAL GLN LEU GLY PHE VAL ASN MET MET SEQRES 6 C 103 SER VAL ALA ASP ALA ASP GLU VAL ARG LYS ASN LEU ASN SEQRES 7 C 103 ASP GLY ASN LEU ILE GLY GLU ASN PHE THR LEU LYS VAL SEQRES 8 C 103 THR ASP HIS LYS ASN VAL GLY GLY SER LEU LEU PRO SEQRES 1 D 103 GLY PRO ASP SER MET ALA SER SER SER THR ALA TYR TYR SEQRES 2 D 103 LEU LYS ASP ALA GLY PHE HIS ILE ARG ASN ILE PRO LYS SEQRES 3 D 103 ALA TRP ASN ASP TRP ASN LEU PHE HIS VAL PHE GLN ASN SEQRES 4 D 103 PHE GLY LYS VAL SER TYR CYS ARG VAL VAL GLY GLN SER SEQRES 5 D 103 ASN ASP GLY GLN VAL GLN LEU GLY PHE VAL ASN MET MET SEQRES 6 D 103 SER VAL ALA ASP ALA ASP GLU VAL ARG LYS ASN LEU ASN SEQRES 7 D 103 ASP GLY ASN LEU ILE GLY GLU ASN PHE THR LEU LYS VAL SEQRES 8 D 103 THR ASP HIS LYS ASN VAL GLY GLY SER LEU LEU PRO FORMUL 5 HOH *139(H2 O) HELIX 1 AA1 ASP A 200 GLU A 202 5 3 HELIX 2 AA2 ASN A 215 LEU A 223 1 9 HELIX 3 AA3 ASN A 245 ASN A 257 1 13 HELIX 4 AA4 ASP B 200 GLU B 202 5 3 HELIX 5 AA5 ASN B 215 LEU B 223 1 9 HELIX 6 AA6 ASN B 245 ASN B 257 1 13 HELIX 7 AA7 ASN C 25 ASN C 35 1 11 HELIX 8 AA8 SER C 62 ASN C 72 1 11 HELIX 9 AA9 ASN D 25 ASN D 35 1 11 HELIX 10 AB1 SER D 62 ASN D 72 1 11 SHEET 1 AA1 4 VAL A 228 GLY A 235 0 SHEET 2 AA1 4 SER A 238 LEU A 243 -1 O ALA A 242 N ASN A 229 SHEET 3 AA1 4 MET A 204 SER A 208 -1 N LEU A 205 O VAL A 241 SHEET 4 AA1 4 GLN A 268 SER A 271 -1 O SER A 270 N LYS A 206 SHEET 1 AA2 2 LYS A 260 ASP A 262 0 SHEET 2 AA2 2 HIS A 265 LYS A 266 -1 O HIS A 265 N LEU A 261 SHEET 1 AA3 4 VAL B 228 GLY B 235 0 SHEET 2 AA3 4 SER B 238 LEU B 243 -1 O VAL B 240 N THR B 232 SHEET 3 AA3 4 MET B 204 SER B 208 -1 N LEU B 205 O VAL B 241 SHEET 4 AA3 4 GLN B 268 SER B 271 -1 O SER B 270 N LYS B 206 SHEET 1 AA4 2 LYS B 260 ASP B 262 0 SHEET 2 AA4 2 HIS B 265 LYS B 266 -1 O HIS B 265 N LEU B 261 SHEET 1 AA5 5 VAL C 39 GLN C 47 0 SHEET 2 AA5 5 VAL C 53 MET C 60 -1 O ASN C 59 N TYR C 41 SHEET 3 AA5 5 GLY C 14 PRO C 21 -1 N PHE C 15 O VAL C 58 SHEET 4 AA5 5 PHE C 83 ASP C 89 -1 O LYS C 86 N ARG C 18 SHEET 5 AA5 5 ASN C 77 GLY C 80 -1 N GLY C 80 O PHE C 83 SHEET 1 AA6 5 VAL D 39 GLN D 47 0 SHEET 2 AA6 5 VAL D 53 MET D 60 -1 O ASN D 59 N TYR D 41 SHEET 3 AA6 5 GLY D 14 PRO D 21 -1 N ILE D 17 O GLY D 56 SHEET 4 AA6 5 THR D 84 ASP D 89 -1 O THR D 88 N HIS D 16 SHEET 5 AA6 5 ASN D 77 ILE D 79 -1 N LEU D 78 O LEU D 85 CISPEP 1 THR A 224 PRO A 225 0 5.70 CISPEP 2 THR B 224 PRO B 225 0 7.61 CRYST1 43.980 68.002 130.585 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022738 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014705 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007658 0.00000