HEADER TRANSFERASE 06-MAY-21 7OGJ TITLE CRYSTAL STRUCTURE OF HUMAN METTL1 IN COMPLEX WITH SAH COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE-N(7)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: METHYLTRANSFERASE-LIKE PROTEIN 1,MRNA (GUANINE-N(7)-)- COMPND 5 METHYLTRANSFERASE,MIRNA (GUANINE-N(7)-)-METHYLTRANSFERASE,TRNA COMPND 6 (GUANINE(46)-N(7))-METHYLTRANSFERASE,TRNA(M7G46)-METHYLTRANSFERASE; COMPND 7 EC: 2.1.1.33,2.1.1.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: METTL1, C12ORF1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS METTL1, COMPLEX, SAH, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR F.NAI,R.K.BEDI,A.CAFLISCH REVDAT 4 20-DEC-23 7OGJ 1 JRNL REVDAT 3 09-AUG-23 7OGJ 1 COMPND SOURCE REMARK HET REVDAT 3 2 1 HETNAM FORMUL ATOM REVDAT 2 21-JUL-21 7OGJ 1 COMPND REMARK HET HETNAM REVDAT 2 2 1 HETSYN FORMUL LINK ATOM REVDAT 1 19-MAY-21 7OGJ 0 JRNL AUTH F.NAI,M.P.FLORES ESPINOZA,A.INVERNIZZI,P.A.VARGAS-ROSALES, JRNL AUTH 2 O.BOBILEVA,M.HEROK,A.CAFLISCH JRNL TITL SMALL-MOLECULE INHIBITORS OF THE M7G-RNA WRITER METTL1 JRNL REF ACS BIO MED CHEM AU 2023 JRNL REFN ESSN 2694-2437 JRNL DOI 10.1021/ACSBIOMEDCHEMAU.3C00030 REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 96085 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4807 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.9200 - 4.9300 1.00 3278 175 0.2010 0.2228 REMARK 3 2 4.9300 - 3.9200 1.00 3153 166 0.1432 0.1517 REMARK 3 3 3.9200 - 3.4200 1.00 3113 163 0.1611 0.1840 REMARK 3 4 3.4200 - 3.1100 1.00 3094 162 0.1801 0.2096 REMARK 3 5 3.1100 - 2.8900 1.00 3070 162 0.1878 0.2079 REMARK 3 6 2.8900 - 2.7200 1.00 3078 161 0.1921 0.2009 REMARK 3 7 2.7200 - 2.5800 1.00 3063 161 0.1926 0.2035 REMARK 3 8 2.5800 - 2.4700 1.00 3047 161 0.1896 0.2172 REMARK 3 9 2.4700 - 2.3700 1.00 3052 160 0.1849 0.1827 REMARK 3 10 2.3700 - 2.2900 1.00 3053 161 0.1837 0.2368 REMARK 3 11 2.2900 - 2.2200 1.00 3038 160 0.1865 0.2006 REMARK 3 12 2.2200 - 2.1600 1.00 3050 161 0.1888 0.2121 REMARK 3 13 2.1600 - 2.1000 1.00 3017 159 0.1882 0.2022 REMARK 3 14 2.1000 - 2.0500 1.00 3021 159 0.1910 0.2138 REMARK 3 15 2.0500 - 2.0000 1.00 3031 160 0.2104 0.2145 REMARK 3 16 2.0000 - 1.9600 1.00 3044 160 0.2235 0.2684 REMARK 3 17 1.9600 - 1.9200 1.00 3006 158 0.2224 0.2407 REMARK 3 18 1.9200 - 1.8800 1.00 3037 160 0.2207 0.2595 REMARK 3 19 1.8800 - 1.8500 1.00 3043 160 0.2278 0.2942 REMARK 3 20 1.8500 - 1.8200 1.00 2977 157 0.2270 0.2573 REMARK 3 21 1.8200 - 1.7900 1.00 3026 159 0.2346 0.2422 REMARK 3 22 1.7900 - 1.7600 1.00 3025 160 0.2494 0.2799 REMARK 3 23 1.7600 - 1.7400 1.00 3003 158 0.2598 0.2651 REMARK 3 24 1.7400 - 1.7100 0.99 2985 157 0.2727 0.2980 REMARK 3 25 1.7100 - 1.6900 1.00 3009 159 0.2842 0.3802 REMARK 3 26 1.6900 - 1.6700 1.00 3014 158 0.2929 0.3086 REMARK 3 27 1.6700 - 1.6400 1.00 3021 159 0.3254 0.2974 REMARK 3 28 1.6400 - 1.6200 0.99 2976 157 0.3400 0.3777 REMARK 3 29 1.6200 - 1.6100 1.00 2959 156 0.3612 0.3657 REMARK 3 30 1.6100 - 1.5900 0.98 2995 158 0.3975 0.4367 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.232 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.302 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.01 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3602 REMARK 3 ANGLE : 1.008 4886 REMARK 3 CHIRALITY : 0.058 521 REMARK 3 PLANARITY : 0.009 623 REMARK 3 DIHEDRAL : 9.182 520 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7OGJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1292115739. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-APR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 96318 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.590 REMARK 200 RESOLUTION RANGE LOW (A) : 46.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.130 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.3400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3CKK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM LITHIUM SULFATE, 20% PEG 1000, REMARK 280 100 MM PHOSPHATE-CITRATE BUFFER PH 4.2, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.78500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.11500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.23000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.11500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.78500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.23000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 ARG A -6 REMARK 465 GLU A -5 REMARK 465 ASN A -4 REMARK 465 LEU A -3 REMARK 465 TYR A -2 REMARK 465 PHE A -1 REMARK 465 GLN A 0 REMARK 465 GLY A 1 REMARK 465 ASP A 2 REMARK 465 HIS A 3 REMARK 465 THR A 4 REMARK 465 LEU A 5 REMARK 465 LEU A 27 REMARK 465 THR A 28 REMARK 465 GLN A 29 REMARK 465 ASN A 30 REMARK 465 GLN A 31 REMARK 465 SER A 32 REMARK 465 HIS A 33 REMARK 465 ASP A 34 REMARK 465 ASP A 35 REMARK 465 PRO A 36 REMARK 465 LYS A 37 REMARK 465 ASP A 38 REMARK 465 LYS A 39 REMARK 465 LYS A 40 REMARK 465 GLU A 41 REMARK 465 LYS A 42 REMARK 465 ARG A 43 REMARK 465 ALA A 44 REMARK 465 LEU A 234 REMARK 465 GLN A 235 REMARK 465 MET B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 ARG B -6 REMARK 465 GLU B -5 REMARK 465 ASN B -4 REMARK 465 LEU B -3 REMARK 465 TYR B -2 REMARK 465 PHE B -1 REMARK 465 GLN B 0 REMARK 465 GLY B 1 REMARK 465 ASP B 2 REMARK 465 HIS B 3 REMARK 465 THR B 4 REMARK 465 LEU B 5 REMARK 465 ARG B 6 REMARK 465 TYR B 7 REMARK 465 PRO B 8 REMARK 465 ASN B 30 REMARK 465 GLN B 31 REMARK 465 SER B 32 REMARK 465 HIS B 33 REMARK 465 ASP B 34 REMARK 465 ASP B 35 REMARK 465 PRO B 36 REMARK 465 LYS B 37 REMARK 465 ASP B 38 REMARK 465 LYS B 39 REMARK 465 LYS B 40 REMARK 465 GLU B 41 REMARK 465 LYS B 42 REMARK 465 GLN B 235 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 6 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 9 CB CG1 CG2 REMARK 470 LYS A 10 CG CD CE NZ REMARK 470 GLU A 18 CG CD OE1 OE2 REMARK 470 GLN A 45 CG CD OE1 NE2 REMARK 470 LYS A 81 CG CD CE NZ REMARK 470 LYS A 113 CG CD CE NZ REMARK 470 LYS A 137 CG CD CE NZ REMARK 470 LYS A 140 CG CD CE NZ REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 VAL A 233 CG1 CG2 REMARK 470 LYS B 10 CE NZ REMARK 470 ARG B 43 N CA CB CG CD NE CZ REMARK 470 ARG B 43 NH1 NH2 REMARK 470 GLN B 45 CD OE1 NE2 REMARK 470 LYS B 81 CG CD CE NZ REMARK 470 LYS B 137 CG CD CE NZ REMARK 470 ARG B 138 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 140 CE NZ REMARK 470 LYS B 220 CG CD CE NZ REMARK 470 VAL B 233 CG1 CG2 REMARK 470 LEU B 234 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 532 O HOH B 616 1.88 REMARK 500 O HOH A 402 O HOH A 576 1.94 REMARK 500 O HOH B 406 O HOH B 598 2.02 REMARK 500 O HOH A 438 O HOH A 533 2.05 REMARK 500 O HOH B 532 O HOH B 586 2.06 REMARK 500 O HOH B 593 O HOH B 616 2.06 REMARK 500 O HOH A 499 O HOH A 589 2.06 REMARK 500 O HOH A 568 O HOH A 607 2.08 REMARK 500 O HOH B 402 O HOH B 448 2.08 REMARK 500 O HOH B 511 O HOH B 595 2.09 REMARK 500 O2 GOL B 301 O HOH B 401 2.10 REMARK 500 O HOH A 601 O HOH A 635 2.11 REMARK 500 OE2 GLU B 209 O HOH B 402 2.12 REMARK 500 O HOH A 422 O HOH A 512 2.13 REMARK 500 O HOH A 438 O HOH A 569 2.14 REMARK 500 O HOH B 556 O HOH B 663 2.15 REMARK 500 O2 PEG A 306 O HOH A 401 2.16 REMARK 500 O HOH A 581 O HOH A 595 2.16 REMARK 500 O HOH B 402 O HOH B 518 2.16 REMARK 500 O1 GOL B 305 O HOH B 403 2.17 REMARK 500 O GLU A 182 O HOH A 402 2.17 REMARK 500 O HOH B 626 O HOH B 688 2.18 REMARK 500 O3 SO4 B 306 O HOH B 404 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU B 193 O1 PEG A 306 3455 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 182 CB GLU A 182 CG -0.127 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR B 139 -7.20 72.95 REMARK 500 HIS B 141 -4.88 -140.72 REMARK 500 VAL B 233 58.35 -98.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 656 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A 657 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A 658 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH A 659 DISTANCE = 6.69 ANGSTROMS REMARK 525 HOH A 660 DISTANCE = 6.79 ANGSTROMS REMARK 525 HOH B 716 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH B 717 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH B 718 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH B 719 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH B 720 DISTANCE = 6.46 ANGSTROMS REMARK 525 HOH B 721 DISTANCE = 6.74 ANGSTROMS DBREF 7OGJ A 2 235 UNP Q9UBP6 TRMB_HUMAN 32 265 DBREF 7OGJ B 2 235 UNP Q9UBP6 TRMB_HUMAN 32 265 SEQADV 7OGJ MET A -16 UNP Q9UBP6 INITIATING METHIONINE SEQADV 7OGJ HIS A -15 UNP Q9UBP6 EXPRESSION TAG SEQADV 7OGJ HIS A -14 UNP Q9UBP6 EXPRESSION TAG SEQADV 7OGJ HIS A -13 UNP Q9UBP6 EXPRESSION TAG SEQADV 7OGJ HIS A -12 UNP Q9UBP6 EXPRESSION TAG SEQADV 7OGJ HIS A -11 UNP Q9UBP6 EXPRESSION TAG SEQADV 7OGJ HIS A -10 UNP Q9UBP6 EXPRESSION TAG SEQADV 7OGJ SER A -9 UNP Q9UBP6 EXPRESSION TAG SEQADV 7OGJ SER A -8 UNP Q9UBP6 EXPRESSION TAG SEQADV 7OGJ GLY A -7 UNP Q9UBP6 EXPRESSION TAG SEQADV 7OGJ ARG A -6 UNP Q9UBP6 EXPRESSION TAG SEQADV 7OGJ GLU A -5 UNP Q9UBP6 EXPRESSION TAG SEQADV 7OGJ ASN A -4 UNP Q9UBP6 EXPRESSION TAG SEQADV 7OGJ LEU A -3 UNP Q9UBP6 EXPRESSION TAG SEQADV 7OGJ TYR A -2 UNP Q9UBP6 EXPRESSION TAG SEQADV 7OGJ PHE A -1 UNP Q9UBP6 EXPRESSION TAG SEQADV 7OGJ GLN A 0 UNP Q9UBP6 EXPRESSION TAG SEQADV 7OGJ GLY A 1 UNP Q9UBP6 EXPRESSION TAG SEQADV 7OGJ MET B -16 UNP Q9UBP6 INITIATING METHIONINE SEQADV 7OGJ HIS B -15 UNP Q9UBP6 EXPRESSION TAG SEQADV 7OGJ HIS B -14 UNP Q9UBP6 EXPRESSION TAG SEQADV 7OGJ HIS B -13 UNP Q9UBP6 EXPRESSION TAG SEQADV 7OGJ HIS B -12 UNP Q9UBP6 EXPRESSION TAG SEQADV 7OGJ HIS B -11 UNP Q9UBP6 EXPRESSION TAG SEQADV 7OGJ HIS B -10 UNP Q9UBP6 EXPRESSION TAG SEQADV 7OGJ SER B -9 UNP Q9UBP6 EXPRESSION TAG SEQADV 7OGJ SER B -8 UNP Q9UBP6 EXPRESSION TAG SEQADV 7OGJ GLY B -7 UNP Q9UBP6 EXPRESSION TAG SEQADV 7OGJ ARG B -6 UNP Q9UBP6 EXPRESSION TAG SEQADV 7OGJ GLU B -5 UNP Q9UBP6 EXPRESSION TAG SEQADV 7OGJ ASN B -4 UNP Q9UBP6 EXPRESSION TAG SEQADV 7OGJ LEU B -3 UNP Q9UBP6 EXPRESSION TAG SEQADV 7OGJ TYR B -2 UNP Q9UBP6 EXPRESSION TAG SEQADV 7OGJ PHE B -1 UNP Q9UBP6 EXPRESSION TAG SEQADV 7OGJ GLN B 0 UNP Q9UBP6 EXPRESSION TAG SEQADV 7OGJ GLY B 1 UNP Q9UBP6 EXPRESSION TAG SEQRES 1 A 252 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 A 252 LEU TYR PHE GLN GLY ASP HIS THR LEU ARG TYR PRO VAL SEQRES 3 A 252 LYS PRO GLU GLU MET ASP TRP SER GLU LEU TYR PRO GLU SEQRES 4 A 252 PHE PHE ALA PRO LEU THR GLN ASN GLN SER HIS ASP ASP SEQRES 5 A 252 PRO LYS ASP LYS LYS GLU LYS ARG ALA GLN ALA GLN VAL SEQRES 6 A 252 GLU PHE ALA ASP ILE GLY CYS GLY TYR GLY GLY LEU LEU SEQRES 7 A 252 VAL GLU LEU SER PRO LEU PHE PRO ASP THR LEU ILE LEU SEQRES 8 A 252 GLY LEU GLU ILE ARG VAL LYS VAL SER ASP TYR VAL GLN SEQRES 9 A 252 ASP ARG ILE ARG ALA LEU ARG ALA ALA PRO ALA GLY GLY SEQRES 10 A 252 PHE GLN ASN ILE ALA CYS LEU ARG SER ASN ALA MET LYS SEQRES 11 A 252 HIS LEU PRO ASN PHE PHE TYR LYS GLY GLN LEU THR LYS SEQRES 12 A 252 MET PHE PHE LEU PHE PRO ASP PRO HIS PHE LYS ARG THR SEQRES 13 A 252 LYS HIS LYS TRP ARG ILE ILE SER PRO THR LEU LEU ALA SEQRES 14 A 252 GLU TYR ALA TYR VAL LEU ARG VAL GLY GLY LEU VAL TYR SEQRES 15 A 252 THR ILE THR ASP VAL LEU GLU LEU HIS ASP TRP MET CYS SEQRES 16 A 252 THR HIS PHE GLU GLU HIS PRO LEU PHE GLU ARG VAL PRO SEQRES 17 A 252 LEU GLU ASP LEU SER GLU ASP PRO VAL VAL GLY HIS LEU SEQRES 18 A 252 GLY THR SER THR GLU GLU GLY LYS LYS VAL LEU ARG ASN SEQRES 19 A 252 GLY GLY LYS ASN PHE PRO ALA ILE PHE ARG ARG ILE GLN SEQRES 20 A 252 ASP PRO VAL LEU GLN SEQRES 1 B 252 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 B 252 LEU TYR PHE GLN GLY ASP HIS THR LEU ARG TYR PRO VAL SEQRES 3 B 252 LYS PRO GLU GLU MET ASP TRP SER GLU LEU TYR PRO GLU SEQRES 4 B 252 PHE PHE ALA PRO LEU THR GLN ASN GLN SER HIS ASP ASP SEQRES 5 B 252 PRO LYS ASP LYS LYS GLU LYS ARG ALA GLN ALA GLN VAL SEQRES 6 B 252 GLU PHE ALA ASP ILE GLY CYS GLY TYR GLY GLY LEU LEU SEQRES 7 B 252 VAL GLU LEU SER PRO LEU PHE PRO ASP THR LEU ILE LEU SEQRES 8 B 252 GLY LEU GLU ILE ARG VAL LYS VAL SER ASP TYR VAL GLN SEQRES 9 B 252 ASP ARG ILE ARG ALA LEU ARG ALA ALA PRO ALA GLY GLY SEQRES 10 B 252 PHE GLN ASN ILE ALA CYS LEU ARG SER ASN ALA MET LYS SEQRES 11 B 252 HIS LEU PRO ASN PHE PHE TYR LYS GLY GLN LEU THR LYS SEQRES 12 B 252 MET PHE PHE LEU PHE PRO ASP PRO HIS PHE LYS ARG THR SEQRES 13 B 252 LYS HIS LYS TRP ARG ILE ILE SER PRO THR LEU LEU ALA SEQRES 14 B 252 GLU TYR ALA TYR VAL LEU ARG VAL GLY GLY LEU VAL TYR SEQRES 15 B 252 THR ILE THR ASP VAL LEU GLU LEU HIS ASP TRP MET CYS SEQRES 16 B 252 THR HIS PHE GLU GLU HIS PRO LEU PHE GLU ARG VAL PRO SEQRES 17 B 252 LEU GLU ASP LEU SER GLU ASP PRO VAL VAL GLY HIS LEU SEQRES 18 B 252 GLY THR SER THR GLU GLU GLY LYS LYS VAL LEU ARG ASN SEQRES 19 B 252 GLY GLY LYS ASN PHE PRO ALA ILE PHE ARG ARG ILE GLN SEQRES 20 B 252 ASP PRO VAL LEU GLN HET GOL A 301 6 HET SAH A 302 26 HET GOL A 303 6 HET GOL A 304 6 HET GOL A 305 6 HET PEG A 306 14 HET PEG A 307 7 HET CL A 308 1 HET GOL B 301 6 HET GOL B 302 6 HET SAH B 303 26 HET GOL B 304 6 HET GOL B 305 12 HET SO4 B 306 5 HET SO4 B 307 5 HETNAM GOL GLYCEROL HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 8(C3 H8 O3) FORMUL 4 SAH 2(C14 H20 N6 O5 S) FORMUL 8 PEG 2(C4 H10 O3) FORMUL 10 CL CL 1- FORMUL 16 SO4 2(O4 S 2-) FORMUL 18 HOH *581(H2 O) HELIX 1 AA1 LYS A 10 MET A 14 5 5 HELIX 2 AA2 GLY A 58 SER A 65 1 8 HELIX 3 AA3 ARG A 79 ALA A 96 1 18 HELIX 4 AA4 HIS A 114 PHE A 119 1 6 HELIX 5 AA5 HIS A 135 THR A 139 5 5 HELIX 6 AA6 LYS A 140 ARG A 144 5 5 HELIX 7 AA7 SER A 147 VAL A 157 1 11 HELIX 8 AA8 VAL A 170 GLU A 183 1 14 HELIX 9 AA9 PRO A 191 SER A 196 5 6 HELIX 10 AB1 VAL A 200 LEU A 204 5 5 HELIX 11 AB2 THR A 208 GLY A 218 1 11 HELIX 12 AB3 LYS B 10 MET B 14 5 5 HELIX 13 AB4 ASP B 15 TYR B 20 1 6 HELIX 14 AB5 PRO B 21 PHE B 24 5 4 HELIX 15 AB6 GLY B 58 PHE B 68 1 11 HELIX 16 AB7 ARG B 79 ALA B 96 1 18 HELIX 17 AB8 HIS B 114 PHE B 119 1 6 HELIX 18 AB9 SER B 147 VAL B 157 1 11 HELIX 19 AC1 VAL B 170 HIS B 184 1 15 HELIX 20 AC2 PRO B 191 SER B 196 5 6 HELIX 21 AC3 VAL B 200 LEU B 204 5 5 HELIX 22 AC4 THR B 208 ASN B 217 1 10 SHEET 1 AA1 7 ILE A 104 ARG A 108 0 SHEET 2 AA1 7 LEU A 72 GLU A 77 1 N GLY A 75 O LEU A 107 SHEET 3 AA1 7 VAL A 48 ILE A 53 1 N ASP A 52 O LEU A 74 SHEET 4 AA1 7 LEU A 124 LEU A 130 1 O THR A 125 N GLU A 49 SHEET 5 AA1 7 LEU A 158 ILE A 167 1 O TYR A 165 N MET A 127 SHEET 6 AA1 7 ALA A 224 ARG A 228 -1 O ARG A 228 N GLY A 161 SHEET 7 AA1 7 PHE A 187 VAL A 190 -1 N VAL A 190 O ILE A 225 SHEET 1 AA2 7 ILE B 104 ARG B 108 0 SHEET 2 AA2 7 LEU B 72 GLU B 77 1 N GLY B 75 O ALA B 105 SHEET 3 AA2 7 VAL B 48 ILE B 53 1 N ASP B 52 O LEU B 74 SHEET 4 AA2 7 LEU B 124 LEU B 130 1 O THR B 125 N GLU B 49 SHEET 5 AA2 7 LEU B 158 THR B 168 1 O TYR B 165 N MET B 127 SHEET 6 AA2 7 PHE B 222 ARG B 228 -1 O PHE B 226 N VAL B 164 SHEET 7 AA2 7 PHE B 187 VAL B 190 -1 N VAL B 190 O ILE B 225 CRYST1 63.570 80.460 138.230 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015731 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012429 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007234 0.00000