HEADER HYDROLASE 12-MAY-21 7OIY TITLE CRYSTAL STRUCTURE OF THE ZUFSP FAMILY MEMBER MUG105 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN CARBOXYL-TERMINAL HYDROLASE MUG105; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LYS-48-SELECTIVE DEUBIQUITINASE MUG105,DUB,MEIOTICALLY UP- COMPND 5 REGULATED GENE 105 PROTEIN; COMPND 6 EC: 3.4.19.12; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE (STRAIN 972 / ATCC SOURCE 3 24843); SOURCE 4 ORGANISM_COMMON: FISSION YEAST; SOURCE 5 ORGANISM_TAXID: 284812; SOURCE 6 STRAIN: 972 / ATCC 24843; SOURCE 7 GENE: MUG105, SPAC25H1.04; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ZUFSP, DEUBIQUITINASE, SCHIZOSACCHAROMYCES POMBE, FISSION YEAST, KEYWDS 2 CYSTEINE PEPTIDASE, K48, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.PICHLO,T.HERMANNS,K.HOFMANN,U.BAUMANN REVDAT 2 31-JAN-24 7OIY 1 REMARK REVDAT 1 02-FEB-22 7OIY 0 JRNL AUTH T.HERMANNS,C.PICHLO,U.BAUMANN,K.HOFMANN JRNL TITL A STRUCTURAL BASIS FOR THE DIVERSE LINKAGE SPECIFICITIES JRNL TITL 2 WITHIN THE ZUFSP DEUBIQUITINASE FAMILY. JRNL REF NAT COMMUN V. 13 401 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 35058438 JRNL DOI 10.1038/S41467-022-28049-6 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.1_4122 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.420 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 53081 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.770 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.4600 - 4.9400 1.00 3716 137 0.1540 0.1533 REMARK 3 2 4.9400 - 3.9200 1.00 3681 142 0.1206 0.1510 REMARK 3 3 3.9200 - 3.4300 0.99 3639 147 0.1298 0.1653 REMARK 3 4 3.4300 - 3.1100 0.99 3638 143 0.1664 0.2206 REMARK 3 5 3.1100 - 2.8900 1.00 3659 146 0.1841 0.1997 REMARK 3 6 2.8900 - 2.7200 1.00 3659 143 0.1891 0.2375 REMARK 3 7 2.7200 - 2.5800 1.00 3615 143 0.2017 0.2328 REMARK 3 8 2.5800 - 2.4700 1.00 3667 147 0.2036 0.2784 REMARK 3 9 2.4700 - 2.3800 1.00 3642 141 0.2169 0.2536 REMARK 3 10 2.3800 - 2.2900 1.00 3628 139 0.2233 0.2453 REMARK 3 11 2.2900 - 2.2200 1.00 3660 146 0.2311 0.2900 REMARK 3 12 2.2200 - 2.1600 1.00 3627 146 0.2509 0.2711 REMARK 3 13 2.1600 - 2.1000 1.00 3651 142 0.2771 0.2696 REMARK 3 14 2.1000 - 2.0500 0.99 3599 138 0.3006 0.3578 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.234 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4149 REMARK 3 ANGLE : 0.501 5619 REMARK 3 CHIRALITY : 0.042 587 REMARK 3 PLANARITY : 0.003 727 REMARK 3 DIHEDRAL : 12.444 1474 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 14 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.3529 161.3045 4.3942 REMARK 3 T TENSOR REMARK 3 T11: 0.3540 T22: 0.5096 REMARK 3 T33: 0.5021 T12: 0.1835 REMARK 3 T13: 0.1142 T23: 0.0592 REMARK 3 L TENSOR REMARK 3 L11: 3.5089 L22: 6.8814 REMARK 3 L33: 6.9890 L12: 4.5417 REMARK 3 L13: -3.6214 L23: -6.4931 REMARK 3 S TENSOR REMARK 3 S11: 0.3011 S12: 0.6597 S13: 0.8720 REMARK 3 S21: -0.0589 S22: 0.2731 S23: 0.8475 REMARK 3 S31: -0.6226 S32: -0.9076 S33: -0.4728 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 15 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.3240 151.0276 15.6181 REMARK 3 T TENSOR REMARK 3 T11: 0.2293 T22: 0.1996 REMARK 3 T33: 0.2767 T12: 0.0307 REMARK 3 T13: 0.0437 T23: -0.0031 REMARK 3 L TENSOR REMARK 3 L11: 2.3668 L22: 1.6099 REMARK 3 L33: 4.4360 L12: 0.2493 REMARK 3 L13: -0.9284 L23: -1.7137 REMARK 3 S TENSOR REMARK 3 S11: 0.0934 S12: -0.0477 S13: 0.2525 REMARK 3 S21: 0.0942 S22: 0.0246 S23: 0.0510 REMARK 3 S31: -0.3381 S32: -0.1018 S33: -0.0782 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 73 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.1776 141.5724 28.9191 REMARK 3 T TENSOR REMARK 3 T11: 0.2584 T22: 0.3526 REMARK 3 T33: 0.2758 T12: -0.0257 REMARK 3 T13: -0.0195 T23: 0.0280 REMARK 3 L TENSOR REMARK 3 L11: 2.0489 L22: 8.5205 REMARK 3 L33: 5.1311 L12: 1.9116 REMARK 3 L13: -1.5131 L23: -0.1921 REMARK 3 S TENSOR REMARK 3 S11: 0.0244 S12: -0.2365 S13: -0.0546 REMARK 3 S21: 0.3252 S22: -0.0783 S23: -0.6948 REMARK 3 S31: -0.0057 S32: 0.5041 S33: 0.0438 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 107 THROUGH 146 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.2012 145.3429 10.3660 REMARK 3 T TENSOR REMARK 3 T11: 0.2244 T22: 0.2449 REMARK 3 T33: 0.2135 T12: 0.0105 REMARK 3 T13: 0.0127 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 2.7896 L22: 1.5704 REMARK 3 L33: 3.8227 L12: 0.1642 REMARK 3 L13: -2.2967 L23: -0.4840 REMARK 3 S TENSOR REMARK 3 S11: -0.0557 S12: -0.0894 S13: -0.0878 REMARK 3 S21: -0.0021 S22: -0.0606 S23: -0.1768 REMARK 3 S31: 0.0126 S32: 0.2059 S33: 0.1112 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 147 THROUGH 173 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.7057 150.4672 7.1436 REMARK 3 T TENSOR REMARK 3 T11: 0.1780 T22: 0.2341 REMARK 3 T33: 0.2425 T12: 0.0214 REMARK 3 T13: 0.0688 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 6.7734 L22: 7.2369 REMARK 3 L33: 7.8219 L12: 0.7845 REMARK 3 L13: -0.3922 L23: -0.1452 REMARK 3 S TENSOR REMARK 3 S11: 0.1272 S12: 0.2590 S13: -0.1818 REMARK 3 S21: 0.1003 S22: -0.0716 S23: 0.1844 REMARK 3 S31: 0.4578 S32: -0.1428 S33: -0.0142 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 174 THROUGH 196 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.8796 164.0420 10.2057 REMARK 3 T TENSOR REMARK 3 T11: 0.5189 T22: 0.3733 REMARK 3 T33: 0.5642 T12: 0.0115 REMARK 3 T13: 0.2081 T23: 0.0097 REMARK 3 L TENSOR REMARK 3 L11: 1.3346 L22: 3.1396 REMARK 3 L33: 2.0488 L12: -0.9779 REMARK 3 L13: 1.4194 L23: -2.1831 REMARK 3 S TENSOR REMARK 3 S11: 0.4161 S12: -0.0963 S13: 0.9194 REMARK 3 S21: 0.3721 S22: 0.3181 S23: 0.4079 REMARK 3 S31: -1.1081 S32: -0.3395 S33: -0.6554 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 197 THROUGH 214 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.1061 163.3057 8.7275 REMARK 3 T TENSOR REMARK 3 T11: 0.3322 T22: 0.2122 REMARK 3 T33: 0.3908 T12: -0.0418 REMARK 3 T13: 0.0688 T23: -0.0363 REMARK 3 L TENSOR REMARK 3 L11: 4.0686 L22: 5.3979 REMARK 3 L33: 3.6679 L12: -1.2946 REMARK 3 L13: 0.3799 L23: -1.6822 REMARK 3 S TENSOR REMARK 3 S11: 0.2100 S12: -0.3946 S13: 0.8253 REMARK 3 S21: 0.2172 S22: 0.0523 S23: -0.1744 REMARK 3 S31: -0.4984 S32: -0.0675 S33: -0.1950 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 215 THROUGH 244 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.4117 138.1232 11.9023 REMARK 3 T TENSOR REMARK 3 T11: 0.3782 T22: 0.2220 REMARK 3 T33: 0.2730 T12: 0.0346 REMARK 3 T13: 0.0691 T23: -0.0163 REMARK 3 L TENSOR REMARK 3 L11: 3.6052 L22: 1.5469 REMARK 3 L33: 2.6842 L12: 0.6654 REMARK 3 L13: -1.1020 L23: 0.0368 REMARK 3 S TENSOR REMARK 3 S11: -0.2887 S12: 0.0052 S13: -0.5730 REMARK 3 S21: 0.2578 S22: 0.0766 S23: -0.0366 REMARK 3 S31: 0.6169 S32: 0.1274 S33: 0.1705 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.1883 156.4126 8.4491 REMARK 3 T TENSOR REMARK 3 T11: 0.2917 T22: 0.2811 REMARK 3 T33: 0.3367 T12: -0.0417 REMARK 3 T13: -0.0834 T23: -0.0253 REMARK 3 L TENSOR REMARK 3 L11: 1.4470 L22: 2.0879 REMARK 3 L33: 4.7003 L12: -1.5070 REMARK 3 L13: 1.4466 L23: -2.8026 REMARK 3 S TENSOR REMARK 3 S11: 0.0794 S12: -0.0149 S13: -0.1205 REMARK 3 S21: -0.1433 S22: 0.0474 S23: 0.1076 REMARK 3 S31: 0.2390 S32: -0.1114 S33: -0.1445 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 107 THROUGH 173 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.6693 163.4570 17.1390 REMARK 3 T TENSOR REMARK 3 T11: 0.2031 T22: 0.1809 REMARK 3 T33: 0.1752 T12: 0.0118 REMARK 3 T13: -0.0261 T23: -0.0199 REMARK 3 L TENSOR REMARK 3 L11: 3.5265 L22: 2.5797 REMARK 3 L33: 3.5849 L12: -0.7450 REMARK 3 L13: 1.6413 L23: -0.0655 REMARK 3 S TENSOR REMARK 3 S11: 0.0350 S12: -0.0746 S13: 0.0325 REMARK 3 S21: 0.0292 S22: 0.0499 S23: -0.0260 REMARK 3 S31: 0.0338 S32: -0.0491 S33: -0.0984 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 174 THROUGH 196 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.9961 145.4966 15.5679 REMARK 3 T TENSOR REMARK 3 T11: 0.4806 T22: 0.3455 REMARK 3 T33: 0.4378 T12: 0.0612 REMARK 3 T13: -0.1897 T23: -0.0423 REMARK 3 L TENSOR REMARK 3 L11: 1.8811 L22: 5.8352 REMARK 3 L33: 2.8560 L12: -0.0537 REMARK 3 L13: -1.8590 L23: -2.3848 REMARK 3 S TENSOR REMARK 3 S11: 0.4831 S12: 0.2106 S13: -0.4084 REMARK 3 S21: -0.6160 S22: -0.0530 S23: 0.0977 REMARK 3 S31: 0.8238 S32: 0.0320 S33: -0.4136 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 197 THROUGH 244 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.3337 163.7920 15.9330 REMARK 3 T TENSOR REMARK 3 T11: 0.2549 T22: 0.2181 REMARK 3 T33: 0.1807 T12: 0.0108 REMARK 3 T13: -0.0475 T23: -0.0191 REMARK 3 L TENSOR REMARK 3 L11: 1.6871 L22: 2.0847 REMARK 3 L33: 2.0054 L12: -0.0757 REMARK 3 L13: 0.0032 L23: 0.3421 REMARK 3 S TENSOR REMARK 3 S11: 0.0726 S12: -0.0669 S13: 0.0943 REMARK 3 S21: -0.2528 S22: -0.0536 S23: 0.0736 REMARK 3 S31: -0.1072 S32: -0.0921 S33: -0.0267 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 1 through 3 or REMARK 3 resid 5 through 10 or resid 12 through 57 REMARK 3 or resid 59 through 73 or resid 75 REMARK 3 through 103 or resid 105 through 160 or REMARK 3 resid 162 through 164 or resid 166 REMARK 3 through 208 or resid 210 through 213 or REMARK 3 resid 215 through 244)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 1 through 3 or REMARK 3 resid 5 through 10 or resid 12 through 57 REMARK 3 or resid 59 through 73 or resid 75 REMARK 3 through 103 or resid 105 through 160 or REMARK 3 resid 162 through 164 or resid 166 REMARK 3 through 190 or (resid 191 through 193 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 194 through 208 or REMARK 3 resid 210 through 213 or resid 215 REMARK 3 through 244)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7OIY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1292115820. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JAN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.967700 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER R 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 20180126 REMARK 200 DATA SCALING SOFTWARE : XDS 20180126 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53097 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 39.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 6EI1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M SODIUM ACETATE PH 7.0; 0.1 M BIS REMARK 280 -TRIS PROPANE PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.50550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.75275 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 83.25825 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 191 CG CD OE1 NE2 REMARK 470 LYS A 192 CG CD CE NZ REMARK 470 LYS A 193 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 486 O HOH A 525 2.05 REMARK 500 O HOH A 410 O HOH A 435 2.13 REMARK 500 O HOH B 483 O HOH B 495 2.19 REMARK 500 OE2 GLU A 147 O HOH A 401 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 36 -69.74 -134.45 REMARK 500 TRP A 40 -14.59 -145.49 REMARK 500 ASP A 89 104.77 67.38 REMARK 500 SER A 189 41.23 -105.04 REMARK 500 VAL A 190 -42.08 -139.44 REMARK 500 ILE B 36 -68.94 -134.70 REMARK 500 TRP B 40 -13.80 -146.78 REMARK 500 ASP B 89 100.02 64.53 REMARK 500 SER B 189 40.91 -108.62 REMARK 500 VAL B 190 -39.38 -144.42 REMARK 500 GLN B 191 -2.65 -33.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 148 OG REMARK 620 2 ASN A 150 O 84.8 REMARK 620 3 THR A 152 OG1 87.6 99.0 REMARK 620 4 HOH A 442 O 98.1 167.9 92.8 REMARK 620 5 HOH A 466 O 170.0 104.9 93.2 71.8 REMARK 620 6 HOH A 468 O 99.4 84.8 172.3 83.1 79.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 148 OG REMARK 620 2 ASN B 150 O 75.4 REMARK 620 3 THR B 152 OG1 83.3 93.9 REMARK 620 4 HOH B 431 O 98.8 167.1 96.9 REMARK 620 5 HOH B 459 O 174.4 110.1 95.3 75.9 REMARK 620 6 HOH B 517 O 101.0 94.5 171.3 75.1 79.7 REMARK 620 N 1 2 3 4 5 DBREF 7OIY A 1 244 UNP O13979 MU105_SCHPO 1 244 DBREF 7OIY B 1 244 UNP O13979 MU105_SCHPO 1 244 SEQRES 1 A 244 MET SER LYS CYS LEU GLN GLN LEU LYS ARG GLN LEU GLN SEQRES 2 A 244 HIS PHE GLY ILE ASP GLY CYS SER LEU ALA ASP GLY ASP SEQRES 3 A 244 ILE ASP TYR PHE PHE THR VAL THR GLY ILE ASP ARG GLY SEQRES 4 A 244 TRP GLY CYS GLY TRP ARG ASN ILE GLN MET LEU ILE SER SEQRES 5 A 244 TRP LEU GLN TYR THR ASN PRO ASN TRP PHE LYS ARG ASN SEQRES 6 A 244 PHE SER SER GLY ASN TYR GLU ILE ASN SER LEU GLN SER SEQRES 7 A 244 LEU LEU LEU SER ALA TRP MET LYS GLY ILE ASP ALA GLU SEQRES 8 A 244 GLY TYR ALA GLN LEU GLY ASP ASN LEU HIS GLY LYS TRP SEQRES 9 A 244 ILE GLY ALA THR GLU VAL TYR SER LEU PHE THR GLY LEU SEQRES 10 A 244 PHE VAL ASN VAL ALA LEU VAL ASP PHE ASP PHE ARG SER SEQRES 11 A 244 GLU ALA SER ALA SER ASN ALA LEU PHE LEU TYR VAL LYS SEQRES 12 A 244 LYS HIS PHE GLU SER SER ASN ASP THR SER ASN VAL SER SEQRES 13 A 244 PRO CYS TYR LEU GLN PHE GLN GLY HIS SER ILE ILE ILE SEQRES 14 A 244 ILE GLY PHE CYS SER SER LEU GLU THR LEU VAL VAL LEU SEQRES 15 A 244 ASP PRO ASP ARG TYR GLN SER VAL GLN LYS LYS PHE VAL SEQRES 16 A 244 ASN ILE ALA ASP PHE ASN HIS CYS TYR MET ARG LYS LYS SEQRES 17 A 244 ARG SER LEU LYS PHE SER GLN PHE GLN LEU VAL HIS PHE SEQRES 18 A 244 LYS GLN ASN ILE PHE LEU ASN ASP PHE SER SER LYS LEU SEQRES 19 A 244 GLU VAL ARG SER THR ARG ILE SER ASP PHE SEQRES 1 B 244 MET SER LYS CYS LEU GLN GLN LEU LYS ARG GLN LEU GLN SEQRES 2 B 244 HIS PHE GLY ILE ASP GLY CYS SER LEU ALA ASP GLY ASP SEQRES 3 B 244 ILE ASP TYR PHE PHE THR VAL THR GLY ILE ASP ARG GLY SEQRES 4 B 244 TRP GLY CYS GLY TRP ARG ASN ILE GLN MET LEU ILE SER SEQRES 5 B 244 TRP LEU GLN TYR THR ASN PRO ASN TRP PHE LYS ARG ASN SEQRES 6 B 244 PHE SER SER GLY ASN TYR GLU ILE ASN SER LEU GLN SER SEQRES 7 B 244 LEU LEU LEU SER ALA TRP MET LYS GLY ILE ASP ALA GLU SEQRES 8 B 244 GLY TYR ALA GLN LEU GLY ASP ASN LEU HIS GLY LYS TRP SEQRES 9 B 244 ILE GLY ALA THR GLU VAL TYR SER LEU PHE THR GLY LEU SEQRES 10 B 244 PHE VAL ASN VAL ALA LEU VAL ASP PHE ASP PHE ARG SER SEQRES 11 B 244 GLU ALA SER ALA SER ASN ALA LEU PHE LEU TYR VAL LYS SEQRES 12 B 244 LYS HIS PHE GLU SER SER ASN ASP THR SER ASN VAL SER SEQRES 13 B 244 PRO CYS TYR LEU GLN PHE GLN GLY HIS SER ILE ILE ILE SEQRES 14 B 244 ILE GLY PHE CYS SER SER LEU GLU THR LEU VAL VAL LEU SEQRES 15 B 244 ASP PRO ASP ARG TYR GLN SER VAL GLN LYS LYS PHE VAL SEQRES 16 B 244 ASN ILE ALA ASP PHE ASN HIS CYS TYR MET ARG LYS LYS SEQRES 17 B 244 ARG SER LEU LYS PHE SER GLN PHE GLN LEU VAL HIS PHE SEQRES 18 B 244 LYS GLN ASN ILE PHE LEU ASN ASP PHE SER SER LYS LEU SEQRES 19 B 244 GLU VAL ARG SER THR ARG ILE SER ASP PHE HET NA A 301 1 HET NA B 301 1 HETNAM NA SODIUM ION FORMUL 3 NA 2(NA 1+) FORMUL 5 HOH *301(H2 O) HELIX 1 AA1 LYS A 3 PHE A 15 1 13 HELIX 2 AA2 GLY A 41 ASN A 58 1 18 HELIX 3 AA3 ASN A 58 PHE A 66 1 9 HELIX 4 AA4 GLU A 72 LYS A 86 1 15 HELIX 5 AA5 ASP A 89 LEU A 96 5 8 HELIX 6 AA6 GLY A 106 LEU A 117 1 12 HELIX 7 AA7 SER A 130 GLU A 147 1 18 HELIX 8 AA8 ASN A 196 TYR A 204 1 9 HELIX 9 AA9 LYS A 207 LEU A 211 5 5 HELIX 10 AB1 LYS B 3 PHE B 15 1 13 HELIX 11 AB2 GLY B 41 ASN B 58 1 18 HELIX 12 AB3 ASN B 58 PHE B 66 1 9 HELIX 13 AB4 GLU B 72 LYS B 86 1 15 HELIX 14 AB5 ASP B 89 LEU B 96 5 8 HELIX 15 AB6 GLY B 106 LEU B 117 1 12 HELIX 16 AB7 SER B 130 GLU B 147 1 18 HELIX 17 AB8 ASN B 196 TYR B 204 1 9 HELIX 18 AB9 ARG B 209 LYS B 212 5 4 SHEET 1 AA1 4 CYS A 20 LEU A 22 0 SHEET 2 AA1 4 HIS A 165 CYS A 173 -1 O PHE A 172 N SER A 21 SHEET 3 AA1 4 THR A 178 LEU A 182 -1 O LEU A 182 N ILE A 168 SHEET 4 AA1 4 MET A 205 ARG A 206 -1 O ARG A 206 N LEU A 179 SHEET 1 AA2 6 CYS A 20 LEU A 22 0 SHEET 2 AA2 6 HIS A 165 CYS A 173 -1 O PHE A 172 N SER A 21 SHEET 3 AA2 6 CYS A 158 PHE A 162 -1 N CYS A 158 O ILE A 169 SHEET 4 AA2 6 GLN A 215 PHE A 226 -1 O VAL A 219 N TYR A 159 SHEET 5 AA2 6 VAL A 119 ASP A 127 -1 N ASN A 120 O ILE A 225 SHEET 6 AA2 6 THR A 239 SER A 242 1 O ILE A 241 N ASP A 125 SHEET 1 AA3 4 CYS B 20 LEU B 22 0 SHEET 2 AA3 4 HIS B 165 CYS B 173 -1 O PHE B 172 N SER B 21 SHEET 3 AA3 4 THR B 178 LEU B 182 -1 O LEU B 182 N ILE B 168 SHEET 4 AA3 4 MET B 205 LYS B 207 -1 O ARG B 206 N LEU B 179 SHEET 1 AA4 6 CYS B 20 LEU B 22 0 SHEET 2 AA4 6 HIS B 165 CYS B 173 -1 O PHE B 172 N SER B 21 SHEET 3 AA4 6 CYS B 158 PHE B 162 -1 N CYS B 158 O ILE B 169 SHEET 4 AA4 6 GLN B 215 PHE B 226 -1 O VAL B 219 N TYR B 159 SHEET 5 AA4 6 VAL B 119 ASP B 127 -1 N ASN B 120 O ILE B 225 SHEET 6 AA4 6 THR B 239 SER B 242 1 O ILE B 241 N ASP B 125 LINK OG SER A 148 NA NA A 301 1555 1555 2.40 LINK O ASN A 150 NA NA A 301 1555 1555 2.43 LINK OG1 THR A 152 NA NA A 301 1555 1555 2.62 LINK NA NA A 301 O HOH A 442 1555 1555 2.58 LINK NA NA A 301 O HOH A 466 1555 1555 2.42 LINK NA NA A 301 O HOH A 468 1555 1555 2.63 LINK OG SER B 148 NA NA B 301 1555 1555 2.93 LINK O ASN B 150 NA NA B 301 1555 1555 2.53 LINK OG1 THR B 152 NA NA B 301 1555 1555 2.70 LINK NA NA B 301 O HOH B 431 1555 1555 2.53 LINK NA NA B 301 O HOH B 459 1555 1555 2.77 LINK NA NA B 301 O HOH B 517 1555 1555 2.54 CRYST1 88.235 88.235 111.011 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011333 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011333 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009008 0.00000 MTRIX1 1 0.870582 0.492021 0.001223 -104.02642 1 MTRIX2 1 0.491637 -0.869995 0.037434 269.42867 1 MTRIX3 1 0.019482 -0.031988 -0.999298 30.44556 1