HEADER SIGNALING PROTEIN 13-MAY-21 7OJ1 TITLE BACILLUS SUBTILIS IMPDH IN COMPLEX WITH AP4A COMPND MOL_ID: 1; COMPND 2 MOLECULE: INOSINE-5'-MONOPHOSPHATE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.1.205; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: INOSINE-5'-MONOPHOSPHATE DEHYDROGENASE; COMPND 8 CHAIN: B; COMPND 9 EC: 1.1.1.205; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: GUAB, B4122_3662, B4417_3411, ETA10_00070, ETK61_00070, SOURCE 5 GII81_00070, SC09_CONTIG28ORF00345; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 10 ORGANISM_TAXID: 1423; SOURCE 11 GENE: GUAB, B4122_3662, B4417_3411, ETA10_00070, ETK61_00070, SOURCE 12 GII81_00070, SC09_CONTIG28ORF00345; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS IMP DEHYDROGENASE, DELTA CBS MUTANT, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.I.GIAMMARINARO,G.BANGE REVDAT 2 31-JAN-24 7OJ1 1 REMARK REVDAT 1 14-SEP-22 7OJ1 0 JRNL AUTH P.I.GIAMMARINARO,M.K.M.YOUNG,W.STEINCHEN,C.N.MAIS, JRNL AUTH 2 G.HOCHBERG,J.YANG,D.M.STEVENSON,D.AMADOR-NOGUEZ,A.PAULUS, JRNL AUTH 3 J.D.WANG,G.BANGE JRNL TITL DIADENOSINE TETRAPHOSPHATE REGULATES BIOSYNTHESIS OF GTP IN JRNL TITL 2 BACILLUS SUBTILIS. JRNL REF NAT MICROBIOL V. 7 1442 2022 JRNL REFN ESSN 2058-5276 JRNL PMID 35953658 JRNL DOI 10.1038/S41564-022-01193-X REMARK 2 REMARK 2 RESOLUTION. 2.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.17.1_3660: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.510 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 3 NUMBER OF REFLECTIONS : 89450 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.269 REMARK 3 R VALUE (WORKING SET) : 0.268 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.210 REMARK 3 FREE R VALUE TEST SET COUNT : 4664 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 66.8800 - 7.5900 0.95 2903 165 0.2284 0.2050 REMARK 3 2 7.5800 - 6.0200 0.92 2778 159 0.2723 0.3071 REMARK 3 3 6.0200 - 5.2600 0.96 2904 176 0.2902 0.2797 REMARK 3 4 5.2600 - 4.7800 0.96 2914 164 0.2472 0.2772 REMARK 3 5 4.7800 - 4.4400 0.89 2745 122 0.2439 0.2240 REMARK 3 6 4.4400 - 4.1800 0.93 2829 161 0.2319 0.2683 REMARK 3 7 4.1800 - 3.9700 0.95 2901 172 0.2304 0.2452 REMARK 3 8 3.9700 - 3.7900 0.96 2878 150 0.2474 0.2959 REMARK 3 9 3.7900 - 3.6500 0.96 2920 131 0.2521 0.2814 REMARK 3 10 3.6500 - 3.5200 0.94 2854 158 0.2592 0.2983 REMARK 3 11 3.5200 - 3.4100 0.87 2656 162 0.2663 0.3158 REMARK 3 12 3.4100 - 3.3100 0.90 2763 161 0.2579 0.3297 REMARK 3 13 3.3100 - 3.2300 0.93 2858 131 0.2724 0.2807 REMARK 3 14 3.2300 - 3.1500 0.94 2856 142 0.2703 0.3074 REMARK 3 15 3.1500 - 3.0800 0.95 2882 185 0.2778 0.2838 REMARK 3 16 3.0800 - 3.0100 0.95 2839 167 0.2827 0.3317 REMARK 3 17 3.0100 - 2.9500 0.95 2906 164 0.3100 0.2975 REMARK 3 18 2.9500 - 2.9000 0.95 2920 168 0.3048 0.4028 REMARK 3 19 2.9000 - 2.8400 0.89 2697 137 0.2949 0.2818 REMARK 3 20 2.8400 - 2.8000 0.85 2551 149 0.2944 0.3174 REMARK 3 21 2.8000 - 2.7500 0.89 2698 166 0.2919 0.3288 REMARK 3 22 2.7500 - 2.7100 0.92 2785 180 0.3083 0.3090 REMARK 3 23 2.7100 - 2.6700 0.93 2755 173 0.3221 0.3493 REMARK 3 24 2.6700 - 2.6300 0.93 2914 105 0.3299 0.4274 REMARK 3 25 2.6300 - 2.6000 0.93 2825 152 0.3421 0.3116 REMARK 3 26 2.6000 - 2.5600 0.94 2844 146 0.3437 0.3584 REMARK 3 27 2.5600 - 2.5300 0.94 2811 154 0.3544 0.3254 REMARK 3 28 2.5300 - 2.5000 0.94 2964 131 0.3600 0.3914 REMARK 3 29 2.5000 - 2.4700 0.94 2813 153 0.3676 0.3939 REMARK 3 30 2.4700 - 2.4400 0.94 2823 180 0.3802 0.4031 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 6264 REMARK 3 ANGLE : 1.077 8475 REMARK 3 CHIRALITY : 0.065 1037 REMARK 3 PLANARITY : 0.005 1056 REMARK 3 DIHEDRAL : 20.856 2321 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7OJ1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1292112364. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978561 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 89450 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.440 REMARK 200 RESOLUTION RANGE LOW (A) : 99.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.11200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.44 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.52 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.46400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4DQW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE PH 4.5, 40% V/V REMARK 280 1,2-PROPANEDIOL, 20% GLYCEROL., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 66.87500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 66.87500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 74.84000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 66.87500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 66.87500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 74.84000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 66.87500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 66.87500 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 74.84000 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 66.87500 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 66.87500 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 74.84000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 42390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 137730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -246.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 133.75000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -133.75000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 -133.75000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 133.75000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 66.87500 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 -66.87500 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 -74.84000 REMARK 350 BIOMT1 6 -1.000000 0.000000 0.000000 66.87500 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 -66.87500 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 -74.84000 REMARK 350 BIOMT1 7 0.000000 -1.000000 0.000000 66.87500 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 -66.87500 REMARK 350 BIOMT3 7 0.000000 0.000000 1.000000 -74.84000 REMARK 350 BIOMT1 8 0.000000 1.000000 0.000000 66.87500 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 -66.87500 REMARK 350 BIOMT3 8 0.000000 0.000000 1.000000 -74.84000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 93 CG CD NE CZ NH1 NH2 REMARK 470 THR A 97 OG1 CG2 REMARK 470 PHE A 100 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE A 101 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 105 CG OD1 OD2 REMARK 470 PHE A 109 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 129 CG CD OE1 OE2 REMARK 470 GLU A 130 CG CD OE1 OE2 REMARK 470 ASP A 131 CG OD1 OD2 REMARK 470 GLU A 160 CG CD OE1 OE2 REMARK 470 HIS B 0 CG ND1 CD2 CE1 NE2 REMARK 470 HIS B 1 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 119 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 144 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 148 CG OD1 OD2 REMARK 470 TYR B 149 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TYR B 424 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS B 352 O ALA B 355 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN A 179 O PHE B 145 6544 1.14 REMARK 500 NH1 ARG A 144 OE2 GLU B 184 6544 2.06 REMARK 500 OE1 GLN A 179 C PHE B 145 6544 2.08 REMARK 500 CD GLN A 179 O PHE B 145 6544 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 45 56.12 -90.12 REMARK 500 VAL A 54 -60.12 -127.14 REMARK 500 GLU A 56 -157.50 -124.29 REMARK 500 LYS A 152 -121.09 50.06 REMARK 500 MET A 157 -158.38 -117.33 REMARK 500 ALA A 174 176.55 173.99 REMARK 500 LYS A 176 -56.74 -137.25 REMARK 500 THR A 200 -159.58 -97.11 REMARK 500 THR A 230 -165.13 -123.86 REMARK 500 ALA A 282 12.49 -147.89 REMARK 500 VAL B 54 -61.69 -125.97 REMARK 500 GLU B 56 -160.89 -122.11 REMARK 500 GLU B 130 -74.41 -93.85 REMARK 500 GLN B 132 92.45 -47.58 REMARK 500 GLU B 161 54.91 -113.41 REMARK 500 ASP B 190 -158.53 -101.02 REMARK 500 THR B 230 -169.01 -126.67 REMARK 500 ALA B 282 13.65 -150.19 REMARK 500 ALA B 356 -34.06 102.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 B4P B 501 O2G REMARK 620 2 B4P B 501 O2D 93.5 REMARK 620 N 1 DBREF 7OJ1 A 2 466 PDB 7OJ1 7OJ1 2 466 DBREF 7OJ1 B 0 468 PDB 7OJ1 7OJ1 0 468 SEQRES 1 A 401 TRP GLU SER LYS PHE SER LYS GLU GLY LEU THR PHE ASP SEQRES 2 A 401 ASP VAL LEU LEU VAL PRO ALA LYS SER GLU VAL LEU PRO SEQRES 3 A 401 ARG ASP VAL ASP LEU SER VAL GLU LEU THR LYS THR LEU SEQRES 4 A 401 LYS LEU ASN ILE PRO VAL ILE SER ALA GLY MET ASP THR SEQRES 5 A 401 VAL THR GLU SER ALA MET ALA ILE ALA MET ALA ARG GLN SEQRES 6 A 401 GLY GLY LEU GLY ILE ILE HIS LYS ASN MET SER ILE GLU SEQRES 7 A 401 GLN GLN ALA GLU GLN VAL ASP LYS VAL LYS ARG SER GLU SEQRES 8 A 401 ARG GLY ILE THR ASN PRO PHE PHE LEU THR PRO ASP HIS SEQRES 9 A 401 GLN VAL PHE ASP ALA GLU HIS LEU MET GLY LYS ARG ILE SEQRES 10 A 401 SER GLY VAL PRO ILE GLU GLU ASP LEU VAL GLY ILE ILE SEQRES 11 A 401 THR ASN ARG ASP LEU ARG PHE ILE SER MET LYS ILE SER SEQRES 12 A 401 ASP VAL MET THR LYS GLU GLU LEU VAL THR ALA SER VAL SEQRES 13 A 401 GLY THR THR LEU ASP GLU ALA GLU LYS ILE LEU GLN LYS SEQRES 14 A 401 HIS LYS ILE GLU LYS LEU PRO LEU VAL GLY LEU ILE THR SEQRES 15 A 401 ILE LYS ASP ILE GLU LYS VAL ILE GLU PHE PRO ASN SER SEQRES 16 A 401 SER LYS ASP ILE HIS GLY ARG LEU ILE VAL GLY ALA ALA SEQRES 17 A 401 VAL GLY VAL THR GLY ASP THR MET THR ARG VAL LYS LYS SEQRES 18 A 401 LEU VAL GLU ALA ASN VAL ASP VAL ILE VAL ILE ASP THR SEQRES 19 A 401 ALA HIS GLY HIS SER GLN GLY VAL LEU ASN THR VAL THR SEQRES 20 A 401 LYS ILE ARG GLU THR TYR PRO GLU LEU ASN ILE ILE ALA SEQRES 21 A 401 GLY ASN VAL ALA THR ALA GLU ALA THR ARG ALA LEU ILE SEQRES 22 A 401 GLU ALA GLY ALA ASP VAL VAL LYS VAL GLY ILE GLY PRO SEQRES 23 A 401 ILE CYS THR THR ARG VAL VAL ALA GLY VAL GLY VAL PRO SEQRES 24 A 401 GLN ILE THR ALA ILE TYR ASP CYS ALA THR GLU ALA ARG SEQRES 25 A 401 LYS HIS GLY LYS THR ILE ILE ALA ASP GLY GLY ILE LYS SEQRES 26 A 401 PHE SER GLY ASP ILE THR LYS ALA LEU ALA ALA GLY GLY SEQRES 27 A 401 HIS ALA VAL MET LEU GLY SER LEU LEU ALA GLY THR SER SEQRES 28 A 401 GLU SER PRO GLY GLU THR PRO TYR LYS GLY PRO VAL GLU SEQRES 29 A 401 GLU THR VAL TYR GLN LEU VAL GLY GLY LEU ARG SER GLY SEQRES 30 A 401 MET GLY TYR CYS GLY SER LYS ASP LEU ARG ALA LEU ARG SEQRES 31 A 401 GLU GLU ALA GLN PHE ILE ARG MET THR GLY ALA SEQRES 1 B 425 HIS HIS TRP GLU SER LYS PHE SER LYS GLU GLY LEU THR SEQRES 2 B 425 PHE ASP ASP VAL LEU LEU VAL PRO ALA LYS SER GLU VAL SEQRES 3 B 425 LEU PRO ARG ASP VAL ASP LEU SER VAL GLU LEU THR LYS SEQRES 4 B 425 THR LEU LYS LEU ASN ILE PRO VAL ILE SER ALA GLY MET SEQRES 5 B 425 ASP THR VAL THR GLU SER ALA MET ALA ILE ALA MET ALA SEQRES 6 B 425 ARG GLN GLY GLY LEU GLY ILE ILE HIS LYS ASN MET SER SEQRES 7 B 425 ILE GLU GLN GLN ALA GLU GLN VAL ASP LYS VAL LYS ARG SEQRES 8 B 425 SER GLU ARG GLY ILE THR ASN PRO PHE PHE LEU THR PRO SEQRES 9 B 425 ASP HIS GLN VAL PHE ASP ALA GLU HIS LEU MET GLY LYS SEQRES 10 B 425 TYR ARG ILE SER GLY VAL PRO ILE VAL ASN ASN GLU GLU SEQRES 11 B 425 ASP GLN LYS LEU VAL GLY ILE ILE THR ASN ARG ASP LEU SEQRES 12 B 425 ARG PHE ILE ALA ASP TYR SER MET LYS ILE SER ASP VAL SEQRES 13 B 425 MET THR LYS GLU GLU LEU VAL THR ALA SER VAL GLY THR SEQRES 14 B 425 THR LEU ASP GLU ALA GLU LYS ILE LEU GLN LYS HIS LYS SEQRES 15 B 425 ILE GLU LYS LEU PRO LEU VAL ASP ASP GLN ASN LYS LEU SEQRES 16 B 425 LYS GLY LEU ILE THR ILE LYS ASP ILE GLU LYS VAL ILE SEQRES 17 B 425 GLU PHE PRO ASN SER SER LYS ASP ILE HIS GLY ARG LEU SEQRES 18 B 425 ILE VAL GLY ALA ALA VAL GLY VAL THR GLY ASP THR MET SEQRES 19 B 425 THR ARG VAL LYS LYS LEU VAL GLU ALA ASN VAL ASP VAL SEQRES 20 B 425 ILE VAL ILE ASP THR ALA HIS GLY HIS SER GLN GLY VAL SEQRES 21 B 425 LEU ASN THR VAL THR LYS ILE ARG GLU THR TYR PRO GLU SEQRES 22 B 425 LEU ASN ILE ILE ALA GLY ASN VAL ALA THR ALA GLU ALA SEQRES 23 B 425 THR ARG ALA LEU ILE GLU ALA GLY ALA ASP VAL VAL LYS SEQRES 24 B 425 VAL GLY ILE GLY PRO GLY SER ILE CYS THR THR ARG VAL SEQRES 25 B 425 VAL ALA GLY VAL GLY VAL PRO GLN ILE THR ALA ILE TYR SEQRES 26 B 425 ASP CYS ALA THR GLU ALA ARG LYS HIS GLY LYS THR ILE SEQRES 27 B 425 ILE ALA ASP GLY GLY ILE LYS PHE SER GLY ASP ILE THR SEQRES 28 B 425 LYS ALA LEU ALA ALA GLY GLY HIS ALA VAL MET LEU GLY SEQRES 29 B 425 SER LEU LEU ALA GLY THR SER GLU SER PRO GLY ALA ALA SEQRES 30 B 425 ALA ALA PRO TYR LYS GLY PRO VAL GLU GLU THR VAL TYR SEQRES 31 B 425 GLN LEU VAL GLY GLY LEU ARG SER GLY MET GLY TYR CYS SEQRES 32 B 425 GLY SER LYS ASP LEU ARG ALA LEU ARG GLU GLU ALA GLN SEQRES 33 B 425 PHE ILE ARG MET THR GLY ALA ALA ALA HET B4P A 501 53 HET MG A 502 1 HET B4P B 501 53 HET MG B 502 1 HETNAM B4P BIS(ADENOSINE)-5'-TETRAPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 B4P 2(C20 H28 N10 O19 P4) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *35(H2 O) HELIX 1 AA1 GLU A 3 SER A 7 5 5 HELIX 2 AA2 THR A 12 ASP A 14 5 3 HELIX 3 AA3 LEU A 26 VAL A 30 5 5 HELIX 4 AA4 GLU A 56 GLN A 66 1 11 HELIX 5 AA5 SER A 77 ARG A 90 1 14 HELIX 6 AA6 GLN A 107 LYS A 117 1 11 HELIX 7 AA7 ASN A 140 PHE A 145 1 6 HELIX 8 AA8 LYS A 176 LYS A 182 1 7 HELIX 9 AA9 ILE A 201 LYS A 206 1 6 HELIX 10 AB1 ASP A 232 ALA A 243 1 12 HELIX 11 AB2 SER A 257 TYR A 271 1 15 HELIX 12 AB3 THR A 283 GLY A 294 1 12 HELIX 13 AB4 CYS A 308 GLY A 315 1 8 HELIX 14 AB5 PRO A 319 HIS A 334 1 16 HELIX 15 AB6 PHE A 346 ALA A 356 1 11 HELIX 16 AB7 PRO A 427 GLY A 447 1 21 HELIX 17 AB8 ASP A 450 ALA A 458 1 9 HELIX 18 AB9 GLU B 3 SER B 7 5 5 HELIX 19 AC1 THR B 12 ASP B 14 5 3 HELIX 20 AC2 LEU B 26 VAL B 30 5 5 HELIX 21 AC3 GLU B 56 GLN B 66 1 11 HELIX 22 AC4 SER B 77 ARG B 90 1 14 HELIX 23 AC5 GLN B 107 ARG B 119 1 13 HELIX 24 AC6 ASN B 140 PHE B 145 1 6 HELIX 25 AC7 LYS B 152 VAL B 156 5 5 HELIX 26 AC8 THR B 170 LYS B 182 1 13 HELIX 27 AC9 ILE B 201 PHE B 210 1 10 HELIX 28 AD1 ASP B 232 ALA B 243 1 12 HELIX 29 AD2 SER B 257 TYR B 271 1 15 HELIX 30 AD3 THR B 283 GLY B 294 1 12 HELIX 31 AD4 CYS B 308 GLY B 315 1 8 HELIX 32 AD5 PRO B 319 HIS B 334 1 16 HELIX 33 AD6 PHE B 346 ALA B 355 1 10 HELIX 34 AD7 PRO B 427 GLY B 447 1 21 HELIX 35 AD8 ASP B 450 ALA B 458 1 9 SHEET 1 AA1 2 VAL A 16 LEU A 18 0 SHEET 2 AA1 2 PHE A 460 ARG A 462 -1 O ILE A 461 N LEU A 17 SHEET 1 AA2 2 VAL A 34 THR A 37 0 SHEET 2 AA2 2 LEU A 40 LEU A 42 -1 O LEU A 42 N VAL A 34 SHEET 1 AA3 9 VAL A 46 SER A 48 0 SHEET 2 AA3 9 LEU A 69 ILE A 72 1 O LEU A 69 N SER A 48 SHEET 3 AA3 9 GLY A 224 VAL A 227 1 O GLY A 224 N ILE A 72 SHEET 4 AA3 9 VAL A 247 ILE A 250 1 O VAL A 249 N VAL A 227 SHEET 5 AA3 9 ASN A 275 VAL A 281 1 O ILE A 277 N ILE A 248 SHEET 6 AA3 9 VAL A 297 VAL A 300 1 O VAL A 297 N ALA A 278 SHEET 7 AA3 9 THR A 337 ASP A 341 1 O ILE A 339 N VAL A 300 SHEET 8 AA3 9 ALA A 360 LEU A 363 1 O ALA A 360 N ALA A 340 SHEET 9 AA3 9 VAL A 46 SER A 48 1 N ILE A 47 O LEU A 363 SHEET 1 AA4 2 GLY A 122 ILE A 125 0 SHEET 2 AA4 2 GLY A 136 THR A 139 -1 O ILE A 138 N VAL A 123 SHEET 1 AA5 3 ALA A 165 SER A 166 0 SHEET 2 AA5 3 LEU A 186 VAL A 189 1 O PRO A 187 N ALA A 165 SHEET 3 AA5 3 LEU A 198 ILE A 199 -1 O ILE A 199 N LEU A 186 SHEET 1 AA6 2 VAL B 16 LEU B 18 0 SHEET 2 AA6 2 PHE B 460 ARG B 462 -1 O ILE B 461 N LEU B 17 SHEET 1 AA7 2 VAL B 34 THR B 37 0 SHEET 2 AA7 2 LEU B 40 LEU B 42 -1 O LEU B 42 N VAL B 34 SHEET 1 AA8 9 VAL B 46 SER B 48 0 SHEET 2 AA8 9 LEU B 69 ILE B 72 1 O LEU B 69 N SER B 48 SHEET 3 AA8 9 GLY B 224 VAL B 227 1 O GLY B 224 N ILE B 72 SHEET 4 AA8 9 VAL B 247 ASP B 251 1 O VAL B 249 N VAL B 227 SHEET 5 AA8 9 ILE B 276 VAL B 281 1 O ILE B 277 N ILE B 248 SHEET 6 AA8 9 VAL B 297 VAL B 300 1 O VAL B 297 N ALA B 278 SHEET 7 AA8 9 THR B 337 ASP B 341 1 O ILE B 339 N VAL B 300 SHEET 8 AA8 9 ALA B 360 LEU B 363 1 O ALA B 360 N ALA B 340 SHEET 9 AA8 9 VAL B 46 SER B 48 1 N ILE B 47 O LEU B 363 SHEET 1 AA9 2 GLY B 122 VAL B 126 0 SHEET 2 AA9 2 LEU B 134 THR B 139 -1 O GLY B 136 N ILE B 125 SHEET 1 AB1 3 ALA B 165 SER B 166 0 SHEET 2 AB1 3 LYS B 185 VAL B 189 1 O VAL B 189 N ALA B 165 SHEET 3 AB1 3 LEU B 195 THR B 200 -1 O GLY B 197 N LEU B 188 LINK O2D B4P A 501 MG MG A 502 1555 1555 2.84 LINK O2G B4P B 501 MG MG B 502 1555 1555 2.74 LINK O2D B4P B 501 MG MG B 502 1555 1555 2.28 CISPEP 1 GLY B 279 ASN B 280 0 12.67 CRYST1 133.750 133.750 149.680 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007477 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007477 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006681 0.00000