HEADER TRANSFERASE 17-MAY-21 7OK1 TITLE CRYSTAL STRUCTURE OF PSEUDOMONAS AERUGINOSA LPXA IN COMPLEX WITH TITLE 2 COMPOUND 3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACYL-[ACYL-CARRIER-PROTEIN]-UDP-N-ACETYLGLUCOSAMINE O- COMPND 3 ACYLTRANSFERASE; COMPND 4 CHAIN: A, B, C; COMPND 5 FRAGMENT: FULL-LENGTH PROTEIN; COMPND 6 SYNONYM: UDP-N-ACETYLGLUCOSAMINE ACYLTRANSFERASE; COMPND 7 EC: 2.3.1.129; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA (STRAIN PA7); SOURCE 3 ORGANISM_TAXID: 381754; SOURCE 4 GENE: LPXA, PSPA7_1495; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: ROSETTA PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS ACYLTRANSFERASE, FATTY ACIDS, LIPID A, LEFT-HANDED PARALLEL BETA- KEYWDS 2 HELIX, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.D.RYAN,A.L.PARKES,M.SOUTHEY,O.A.ANDERSEN,M.ZAHN,J.BARKER, AUTHOR 2 B.L.M.DEJONGE REVDAT 3 31-JAN-24 7OK1 1 REMARK REVDAT 2 27-OCT-21 7OK1 1 JRNL REVDAT 1 13-OCT-21 7OK1 0 JRNL AUTH M.D.RYAN,A.L.PARKES,D.CORBETT,A.P.DICKIE,M.SOUTHEY, JRNL AUTH 2 O.A.ANDERSEN,D.B.STEIN,O.R.BARBEAU,A.SANZONE,P.THOMMES, JRNL AUTH 3 J.BARKER,R.CAIN,C.COMPPER,M.DEJOB,A.DORALI,D.ETHERIDGE, JRNL AUTH 4 S.EVANS,A.FAULKNER,E.GADOULEAU,T.GORMAN,D.HAASE, JRNL AUTH 5 M.HOLBROW-WILSHAW,T.KRULLE,X.LI,C.LUMLEY,B.MERTINS,S.NAPIER, JRNL AUTH 6 R.ODEDRA,K.PAPADOPOULOS,V.ROUMPELAKIS,K.SPEAR,E.TRIMBY, JRNL AUTH 7 J.WILLIAMS,M.ZAHN,A.D.KEEFE,Y.ZHANG,H.T.SOUTTER, JRNL AUTH 8 P.A.CENTRELLA,M.A.CLARK,J.W.CUOZZO,C.E.DUMELIN,B.DENG, JRNL AUTH 9 A.HUNT,E.A.SIGEL,D.M.TROAST,B.L.M.DEJONGE JRNL TITL DISCOVERY OF NOVEL UDP- N -ACETYLGLUCOSAMINE ACYLTRANSFERASE JRNL TITL 2 (LPXA) INHIBITORS WITH ACTIVITY AGAINST PSEUDOMONAS JRNL TITL 3 AERUGINOSA . JRNL REF J.MED.CHEM. V. 64 14377 2021 JRNL REFN ISSN 0022-2623 JRNL PMID 34569791 JRNL DOI 10.1021/ACS.JMEDCHEM.1C00888 REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.7 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 62.0 REMARK 3 NUMBER OF REFLECTIONS : 62939 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 3229 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.03 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 8.06 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 1259 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1944 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1204 REMARK 3 BIN R VALUE (WORKING SET) : 0.1919 REMARK 3 BIN FREE R VALUE : 0.2516 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.37 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 55 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5838 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 90 REMARK 3 SOLVENT ATOMS : 344 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.71240 REMARK 3 B22 (A**2) : -1.71240 REMARK 3 B33 (A**2) : 3.42470 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.260 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.173 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.160 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.175 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.162 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6069 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 8241 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2042 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 1084 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6069 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 799 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7447 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.13 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.43 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.22 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -24.4426 -1.2203 29.6672 REMARK 3 T TENSOR REMARK 3 T11: -0.1444 T22: -0.1145 REMARK 3 T33: 0.0710 T12: 0.0142 REMARK 3 T13: -0.0494 T23: -0.0555 REMARK 3 L TENSOR REMARK 3 L11: 1.3321 L22: 2.1684 REMARK 3 L33: 0.8976 L12: 0.5830 REMARK 3 L13: 0.1299 L23: -0.3340 REMARK 3 S TENSOR REMARK 3 S11: -0.0191 S12: 0.0687 S13: -0.0439 REMARK 3 S21: -0.0281 S22: 0.0369 S23: -0.3318 REMARK 3 S31: -0.0456 S32: 0.1181 S33: -0.0178 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -51.6548 13.3115 32.1732 REMARK 3 T TENSOR REMARK 3 T11: -0.1156 T22: -0.1487 REMARK 3 T33: 0.0037 T12: 0.0384 REMARK 3 T13: -0.0509 T23: -0.0429 REMARK 3 L TENSOR REMARK 3 L11: 1.3287 L22: 2.5651 REMARK 3 L33: 1.4025 L12: 0.0078 REMARK 3 L13: -0.1514 L23: -1.1221 REMARK 3 S TENSOR REMARK 3 S11: -0.0194 S12: -0.0403 S13: 0.2257 REMARK 3 S21: 0.2426 S22: -0.0116 S23: 0.0173 REMARK 3 S31: -0.2854 S32: -0.0791 S33: 0.0309 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): -46.2535 -6.7424 9.2544 REMARK 3 T TENSOR REMARK 3 T11: -0.1699 T22: -0.0746 REMARK 3 T33: -0.0574 T12: 0.0144 REMARK 3 T13: -0.0408 T23: -0.0584 REMARK 3 L TENSOR REMARK 3 L11: 1.8449 L22: 2.3151 REMARK 3 L33: 1.2753 L12: 0.5886 REMARK 3 L13: -0.4087 L23: -0.5279 REMARK 3 S TENSOR REMARK 3 S11: -0.0817 S12: 0.4508 S13: 0.0292 REMARK 3 S21: -0.3259 S22: 0.0127 S23: -0.0676 REMARK 3 S31: -0.0707 S32: -0.0278 S33: 0.0691 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7OK1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1292115878. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62977 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920 REMARK 200 RESOLUTION RANGE LOW (A) : 84.741 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.5 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.11200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 35.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 1.13200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5DEM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M NH4CL, 0.1 M NA ACETATE PH 4.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 83.02300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 83.02300 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.27000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 83.02300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 24.63500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 83.02300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 73.90500 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 83.02300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 83.02300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 49.27000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 83.02300 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 73.90500 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 83.02300 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 24.63500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -95.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 LEU B 71 REMARK 465 LYS B 72 REMARK 465 TYR B 73 REMARK 465 LYS B 74 REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 HIS C 0 REMARK 465 MET C 1 REMARK 465 LEU C 71 REMARK 465 LYS C 72 REMARK 465 TYR C 73 REMARK 465 LYS C 74 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 101 -119.63 -110.19 REMARK 500 ASN A 133 126.50 -31.86 REMARK 500 HIS A 164 17.21 57.68 REMARK 500 TYR A 180 -14.38 66.34 REMARK 500 SER A 192 -149.17 -158.65 REMARK 500 ASP B 101 -110.84 -102.28 REMARK 500 ASN B 133 132.21 -31.31 REMARK 500 HIS B 164 17.62 56.65 REMARK 500 TYR B 180 -16.65 70.90 REMARK 500 SER B 192 -151.69 -157.35 REMARK 500 ASP C 101 -137.94 167.91 REMARK 500 ASN C 133 129.19 -32.69 REMARK 500 TYR C 180 -11.72 69.53 REMARK 500 SER C 192 -156.85 -159.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VFN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VFN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VFN B 301 DBREF 7OK1 A 1 258 UNP A6V1E4 LPXA_PSEA7 1 258 DBREF 7OK1 B 1 258 UNP A6V1E4 LPXA_PSEA7 1 258 DBREF 7OK1 C 1 258 UNP A6V1E4 LPXA_PSEA7 1 258 SEQADV 7OK1 GLY A -2 UNP A6V1E4 EXPRESSION TAG SEQADV 7OK1 SER A -1 UNP A6V1E4 EXPRESSION TAG SEQADV 7OK1 HIS A 0 UNP A6V1E4 EXPRESSION TAG SEQADV 7OK1 GLY B -2 UNP A6V1E4 EXPRESSION TAG SEQADV 7OK1 SER B -1 UNP A6V1E4 EXPRESSION TAG SEQADV 7OK1 HIS B 0 UNP A6V1E4 EXPRESSION TAG SEQADV 7OK1 GLY C -2 UNP A6V1E4 EXPRESSION TAG SEQADV 7OK1 SER C -1 UNP A6V1E4 EXPRESSION TAG SEQADV 7OK1 HIS C 0 UNP A6V1E4 EXPRESSION TAG SEQRES 1 A 261 GLY SER HIS MET SER LEU ILE ASP PRO ARG ALA ILE ILE SEQRES 2 A 261 ASP PRO SER ALA ARG LEU ALA ALA ASP VAL GLN VAL GLY SEQRES 3 A 261 PRO TRP SER ILE VAL GLY ALA GLU VAL GLU ILE GLY GLU SEQRES 4 A 261 GLY THR VAL ILE GLY PRO HIS VAL VAL LEU LYS GLY PRO SEQRES 5 A 261 THR LYS ILE GLY LYS HIS ASN ARG ILE TYR GLN PHE SER SEQRES 6 A 261 SER VAL GLY GLU ASP THR PRO ASP LEU LYS TYR LYS GLY SEQRES 7 A 261 GLU PRO THR ARG LEU VAL ILE GLY ASP HIS ASN VAL ILE SEQRES 8 A 261 ARG GLU GLY VAL THR ILE HIS ARG GLY THR VAL GLN ASP SEQRES 9 A 261 ARG ALA GLU THR THR ILE GLY ASP HIS ASN LEU ILE MET SEQRES 10 A 261 ALA TYR ALA HIS ILE GLY HIS ASP SER VAL ILE GLY ASN SEQRES 11 A 261 HIS CYS ILE LEU VAL ASN ASN THR ALA LEU ALA GLY HIS SEQRES 12 A 261 VAL HIS VAL ASP ASP TRP ALA ILE LEU SER GLY TYR THR SEQRES 13 A 261 LEU VAL HIS GLN TYR CYS ARG ILE GLY ALA HIS SER PHE SEQRES 14 A 261 SER GLY MET GLY SER ALA ILE GLY LYS ASP VAL PRO ALA SEQRES 15 A 261 TYR VAL THR VAL PHE GLY ASN PRO ALA GLU ALA ARG SER SEQRES 16 A 261 MET ASN PHE GLU GLY MET ARG ARG ARG GLY PHE SER SER SEQRES 17 A 261 GLU ALA ILE HIS ALA LEU ARG ARG ALA TYR LYS VAL VAL SEQRES 18 A 261 TYR ARG GLN GLY HIS THR VAL GLU GLU ALA LEU ALA GLU SEQRES 19 A 261 LEU ALA GLU SER ALA ALA GLN PHE PRO GLU VAL ALA VAL SEQRES 20 A 261 PHE ARG ASP SER ILE GLN SER ALA THR ARG GLY ILE THR SEQRES 21 A 261 ARG SEQRES 1 B 261 GLY SER HIS MET SER LEU ILE ASP PRO ARG ALA ILE ILE SEQRES 2 B 261 ASP PRO SER ALA ARG LEU ALA ALA ASP VAL GLN VAL GLY SEQRES 3 B 261 PRO TRP SER ILE VAL GLY ALA GLU VAL GLU ILE GLY GLU SEQRES 4 B 261 GLY THR VAL ILE GLY PRO HIS VAL VAL LEU LYS GLY PRO SEQRES 5 B 261 THR LYS ILE GLY LYS HIS ASN ARG ILE TYR GLN PHE SER SEQRES 6 B 261 SER VAL GLY GLU ASP THR PRO ASP LEU LYS TYR LYS GLY SEQRES 7 B 261 GLU PRO THR ARG LEU VAL ILE GLY ASP HIS ASN VAL ILE SEQRES 8 B 261 ARG GLU GLY VAL THR ILE HIS ARG GLY THR VAL GLN ASP SEQRES 9 B 261 ARG ALA GLU THR THR ILE GLY ASP HIS ASN LEU ILE MET SEQRES 10 B 261 ALA TYR ALA HIS ILE GLY HIS ASP SER VAL ILE GLY ASN SEQRES 11 B 261 HIS CYS ILE LEU VAL ASN ASN THR ALA LEU ALA GLY HIS SEQRES 12 B 261 VAL HIS VAL ASP ASP TRP ALA ILE LEU SER GLY TYR THR SEQRES 13 B 261 LEU VAL HIS GLN TYR CYS ARG ILE GLY ALA HIS SER PHE SEQRES 14 B 261 SER GLY MET GLY SER ALA ILE GLY LYS ASP VAL PRO ALA SEQRES 15 B 261 TYR VAL THR VAL PHE GLY ASN PRO ALA GLU ALA ARG SER SEQRES 16 B 261 MET ASN PHE GLU GLY MET ARG ARG ARG GLY PHE SER SER SEQRES 17 B 261 GLU ALA ILE HIS ALA LEU ARG ARG ALA TYR LYS VAL VAL SEQRES 18 B 261 TYR ARG GLN GLY HIS THR VAL GLU GLU ALA LEU ALA GLU SEQRES 19 B 261 LEU ALA GLU SER ALA ALA GLN PHE PRO GLU VAL ALA VAL SEQRES 20 B 261 PHE ARG ASP SER ILE GLN SER ALA THR ARG GLY ILE THR SEQRES 21 B 261 ARG SEQRES 1 C 261 GLY SER HIS MET SER LEU ILE ASP PRO ARG ALA ILE ILE SEQRES 2 C 261 ASP PRO SER ALA ARG LEU ALA ALA ASP VAL GLN VAL GLY SEQRES 3 C 261 PRO TRP SER ILE VAL GLY ALA GLU VAL GLU ILE GLY GLU SEQRES 4 C 261 GLY THR VAL ILE GLY PRO HIS VAL VAL LEU LYS GLY PRO SEQRES 5 C 261 THR LYS ILE GLY LYS HIS ASN ARG ILE TYR GLN PHE SER SEQRES 6 C 261 SER VAL GLY GLU ASP THR PRO ASP LEU LYS TYR LYS GLY SEQRES 7 C 261 GLU PRO THR ARG LEU VAL ILE GLY ASP HIS ASN VAL ILE SEQRES 8 C 261 ARG GLU GLY VAL THR ILE HIS ARG GLY THR VAL GLN ASP SEQRES 9 C 261 ARG ALA GLU THR THR ILE GLY ASP HIS ASN LEU ILE MET SEQRES 10 C 261 ALA TYR ALA HIS ILE GLY HIS ASP SER VAL ILE GLY ASN SEQRES 11 C 261 HIS CYS ILE LEU VAL ASN ASN THR ALA LEU ALA GLY HIS SEQRES 12 C 261 VAL HIS VAL ASP ASP TRP ALA ILE LEU SER GLY TYR THR SEQRES 13 C 261 LEU VAL HIS GLN TYR CYS ARG ILE GLY ALA HIS SER PHE SEQRES 14 C 261 SER GLY MET GLY SER ALA ILE GLY LYS ASP VAL PRO ALA SEQRES 15 C 261 TYR VAL THR VAL PHE GLY ASN PRO ALA GLU ALA ARG SER SEQRES 16 C 261 MET ASN PHE GLU GLY MET ARG ARG ARG GLY PHE SER SER SEQRES 17 C 261 GLU ALA ILE HIS ALA LEU ARG ARG ALA TYR LYS VAL VAL SEQRES 18 C 261 TYR ARG GLN GLY HIS THR VAL GLU GLU ALA LEU ALA GLU SEQRES 19 C 261 LEU ALA GLU SER ALA ALA GLN PHE PRO GLU VAL ALA VAL SEQRES 20 C 261 PHE ARG ASP SER ILE GLN SER ALA THR ARG GLY ILE THR SEQRES 21 C 261 ARG HET VFN A 301 28 HET VFN A 302 28 HET CL A 303 1 HET CL A 304 1 HET CL A 305 1 HET CL A 306 1 HET CL A 307 1 HET VFN B 301 28 HET CL C 301 1 HETNAM VFN ~{N}-[(5-AZANYL-1,3,4-OXADIAZOL-2-YL)METHYL]-2-(2- HETNAM 2 VFN CHLOROPHENYL)SULFANYL-~{N}-[(4-CYANOPHENYL) HETNAM 3 VFN METHYL]ETHANAMIDE HETNAM CL CHLORIDE ION FORMUL 4 VFN 3(C19 H16 CL N5 O2 S) FORMUL 6 CL 6(CL 1-) FORMUL 13 HOH *344(H2 O) HELIX 1 AA1 ASN A 194 ARG A 201 1 8 HELIX 2 AA2 SER A 204 ARG A 220 1 17 HELIX 3 AA3 THR A 224 LEU A 232 1 9 HELIX 4 AA4 LEU A 232 PHE A 239 1 8 HELIX 5 AA5 PHE A 239 SER A 251 1 13 HELIX 6 AA6 ASN B 194 ARG B 201 1 8 HELIX 7 AA7 SER B 204 ARG B 220 1 17 HELIX 8 AA8 THR B 224 PHE B 239 1 16 HELIX 9 AA9 PHE B 239 SER B 251 1 13 HELIX 10 AB1 ASN C 194 ARG C 201 1 8 HELIX 11 AB2 SER C 204 ARG C 220 1 17 HELIX 12 AB3 THR C 224 PHE C 239 1 16 HELIX 13 AB4 PHE C 239 SER C 251 1 13 SHEET 1 AA1 9 ILE A 9 ILE A 10 0 SHEET 2 AA1 9 ILE A 27 VAL A 28 1 O VAL A 28 N ILE A 9 SHEET 3 AA1 9 VAL A 45 LEU A 46 1 O LEU A 46 N ILE A 27 SHEET 4 AA1 9 SER A 63 GLU A 66 1 O VAL A 64 N VAL A 45 SHEET 5 AA1 9 THR A 93 HIS A 95 1 O ILE A 94 N GLY A 65 SHEET 6 AA1 9 HIS A 118 ILE A 119 1 O ILE A 119 N THR A 93 SHEET 7 AA1 9 ALA A 136 LEU A 137 1 O LEU A 137 N HIS A 118 SHEET 8 AA1 9 LEU A 154 VAL A 155 1 O VAL A 155 N ALA A 136 SHEET 9 AA1 9 ALA A 172 ILE A 173 1 O ILE A 173 N LEU A 154 SHEET 1 AA2 8 ARG A 15 LEU A 16 0 SHEET 2 AA2 8 VAL A 32 ILE A 34 1 O ILE A 34 N ARG A 15 SHEET 3 AA2 8 THR A 50 ILE A 52 1 O ILE A 52 N GLU A 33 SHEET 4 AA2 8 ARG A 79 ILE A 82 1 O ILE A 82 N LYS A 51 SHEET 5 AA2 8 GLU A 104 ILE A 107 1 O THR A 105 N VAL A 81 SHEET 6 AA2 8 VAL A 124 ILE A 125 1 O ILE A 125 N THR A 106 SHEET 7 AA2 8 HIS A 142 VAL A 143 1 O VAL A 143 N VAL A 124 SHEET 8 AA2 8 ARG A 160 ILE A 161 1 O ILE A 161 N HIS A 142 SHEET 1 AA310 GLN A 21 VAL A 22 0 SHEET 2 AA310 VAL A 39 ILE A 40 1 O ILE A 40 N GLN A 21 SHEET 3 AA310 ARG A 57 ILE A 58 1 O ILE A 58 N VAL A 39 SHEET 4 AA310 VAL A 87 ILE A 88 1 O ILE A 88 N ARG A 57 SHEET 5 AA310 LEU A 112 ILE A 113 1 O ILE A 113 N VAL A 87 SHEET 6 AA310 ILE A 130 LEU A 131 1 O LEU A 131 N LEU A 112 SHEET 7 AA310 ILE A 148 LEU A 149 1 O LEU A 149 N ILE A 130 SHEET 8 AA310 PHE A 166 SER A 167 1 O SER A 167 N ILE A 148 SHEET 9 AA310 VAL A 181 PHE A 184 1 O VAL A 181 N PHE A 166 SHEET 10 AA310 GLU A 189 MET A 193 -1 O ARG A 191 N THR A 182 SHEET 1 AA4 9 ILE B 9 ILE B 10 0 SHEET 2 AA4 9 ILE B 27 VAL B 28 1 O VAL B 28 N ILE B 9 SHEET 3 AA4 9 VAL B 45 LEU B 46 1 O LEU B 46 N ILE B 27 SHEET 4 AA4 9 SER B 63 GLU B 66 1 O VAL B 64 N VAL B 45 SHEET 5 AA4 9 THR B 93 HIS B 95 1 O ILE B 94 N GLY B 65 SHEET 6 AA4 9 HIS B 118 ILE B 119 1 O ILE B 119 N THR B 93 SHEET 7 AA4 9 ALA B 136 LEU B 137 1 O LEU B 137 N HIS B 118 SHEET 8 AA4 9 LEU B 154 VAL B 155 1 O VAL B 155 N ALA B 136 SHEET 9 AA4 9 ALA B 172 ILE B 173 1 O ILE B 173 N LEU B 154 SHEET 1 AA5 8 ARG B 15 LEU B 16 0 SHEET 2 AA5 8 VAL B 32 ILE B 34 1 O ILE B 34 N ARG B 15 SHEET 3 AA5 8 THR B 50 ILE B 52 1 O THR B 50 N GLU B 33 SHEET 4 AA5 8 ARG B 79 ILE B 82 1 O ILE B 82 N LYS B 51 SHEET 5 AA5 8 GLU B 104 ILE B 107 1 O THR B 105 N VAL B 81 SHEET 6 AA5 8 VAL B 124 ILE B 125 1 O ILE B 125 N THR B 106 SHEET 7 AA5 8 HIS B 142 VAL B 143 1 O VAL B 143 N VAL B 124 SHEET 8 AA5 8 ARG B 160 ILE B 161 1 O ILE B 161 N HIS B 142 SHEET 1 AA610 GLN B 21 VAL B 22 0 SHEET 2 AA610 VAL B 39 ILE B 40 1 O ILE B 40 N GLN B 21 SHEET 3 AA610 ARG B 57 ILE B 58 1 O ILE B 58 N VAL B 39 SHEET 4 AA610 VAL B 87 ILE B 88 1 O ILE B 88 N ARG B 57 SHEET 5 AA610 LEU B 112 ILE B 113 1 O ILE B 113 N VAL B 87 SHEET 6 AA610 ILE B 130 LEU B 131 1 O LEU B 131 N LEU B 112 SHEET 7 AA610 ILE B 148 LEU B 149 1 O LEU B 149 N ILE B 130 SHEET 8 AA610 PHE B 166 SER B 167 1 O SER B 167 N ILE B 148 SHEET 9 AA610 VAL B 181 PHE B 184 1 O VAL B 183 N PHE B 166 SHEET 10 AA610 GLU B 189 MET B 193 -1 O ARG B 191 N THR B 182 SHEET 1 AA7 9 ILE C 9 ILE C 10 0 SHEET 2 AA7 9 ILE C 27 VAL C 28 1 O VAL C 28 N ILE C 9 SHEET 3 AA7 9 VAL C 45 LEU C 46 1 O LEU C 46 N ILE C 27 SHEET 4 AA7 9 SER C 63 GLU C 66 1 O VAL C 64 N VAL C 45 SHEET 5 AA7 9 THR C 93 HIS C 95 1 O ILE C 94 N GLY C 65 SHEET 6 AA7 9 HIS C 118 ILE C 119 1 O ILE C 119 N THR C 93 SHEET 7 AA7 9 ALA C 136 LEU C 137 1 O LEU C 137 N HIS C 118 SHEET 8 AA7 9 LEU C 154 VAL C 155 1 O VAL C 155 N ALA C 136 SHEET 9 AA7 9 ALA C 172 ILE C 173 1 O ILE C 173 N LEU C 154 SHEET 1 AA8 8 ARG C 15 LEU C 16 0 SHEET 2 AA8 8 VAL C 32 ILE C 34 1 O ILE C 34 N ARG C 15 SHEET 3 AA8 8 THR C 50 ILE C 52 1 O ILE C 52 N GLU C 33 SHEET 4 AA8 8 ARG C 79 ILE C 82 1 O ILE C 82 N LYS C 51 SHEET 5 AA8 8 GLU C 104 ILE C 107 1 O THR C 105 N VAL C 81 SHEET 6 AA8 8 VAL C 124 ILE C 125 1 O ILE C 125 N THR C 106 SHEET 7 AA8 8 HIS C 142 VAL C 143 1 O VAL C 143 N VAL C 124 SHEET 8 AA8 8 ARG C 160 ILE C 161 1 O ILE C 161 N HIS C 142 SHEET 1 AA910 GLN C 21 VAL C 22 0 SHEET 2 AA910 VAL C 39 ILE C 40 1 O ILE C 40 N GLN C 21 SHEET 3 AA910 ARG C 57 ILE C 58 1 O ILE C 58 N VAL C 39 SHEET 4 AA910 VAL C 87 ILE C 88 1 O ILE C 88 N ARG C 57 SHEET 5 AA910 LEU C 112 ILE C 113 1 O ILE C 113 N VAL C 87 SHEET 6 AA910 ILE C 130 LEU C 131 1 O LEU C 131 N LEU C 112 SHEET 7 AA910 ILE C 148 LEU C 149 1 O LEU C 149 N ILE C 130 SHEET 8 AA910 PHE C 166 SER C 167 1 O SER C 167 N ILE C 148 SHEET 9 AA910 VAL C 181 PHE C 184 1 O VAL C 183 N PHE C 166 SHEET 10 AA910 GLU C 189 MET C 193 -1 O ARG C 191 N THR C 182 CISPEP 1 GLY A 48 PRO A 49 0 2.85 CISPEP 2 ASN A 186 PRO A 187 0 -1.10 CISPEP 3 GLY B 48 PRO B 49 0 -0.66 CISPEP 4 ASN B 186 PRO B 187 0 0.69 CISPEP 5 GLY C 48 PRO C 49 0 1.87 CISPEP 6 ASN C 186 PRO C 187 0 0.77 SITE 1 AC1 9 LEU A 112 VAL A 132 ASN A 133 SER A 150 SITE 2 AC1 9 GLY A 151 ASP B 70 HIS B 118 ALA B 138 SITE 3 AC1 9 GLN B 157 SITE 1 AC2 8 ASP A 70 LEU A 71 ALA A 138 GLN A 157 SITE 2 AC2 8 VAL C 132 ASN C 133 SER C 150 GLY C 151 SITE 1 AC3 4 ARG A 89 ALA A 115 HOH A 415 PRO B 69 SITE 1 AC4 3 GLY A 168 MET A 169 HOH A 452 SITE 1 AC5 2 ARG A 199 ARG B 199 SITE 1 AC6 4 GLY A 35 LYS A 54 ARG C 15 HOH C 435 SITE 1 AC7 3 LYS C 54 HOH C 420 HOH C 438 SITE 1 AC8 10 LEU B 112 VAL B 132 ASN B 133 SER B 150 SITE 2 AC8 10 GLY B 151 ASP C 70 ALA C 136 ALA C 138 SITE 3 AC8 10 GLN C 157 HOH C 487 CRYST1 166.046 166.046 98.540 90.00 90.00 90.00 I 41 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006022 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006022 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010148 0.00000