HEADER TRANSCRIPTION 17-MAY-21 7OKI TITLE CRYSTAL STRUCTURE OF HUMAN BCL6 BTB DOMAIN IN COMPLEX WITH COMPOUND TITLE 2 12B COMPND MOL_ID: 1; COMPND 2 MOLECULE: B-CELL LYMPHOMA 6 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BCL-6,B-CELL LYMPHOMA 5 PROTEIN,BCL-5,PROTEIN LAZ-3,ZINC COMPND 5 FINGER AND BTB DOMAIN-CONTAINING PROTEIN 27,ZINC FINGER PROTEIN 51; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ALA-TRP-VAL-ILE-PRO-ALA; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BCL6, BCL5, LAZ3, ZBTB27, ZNF51; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: AI; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET48B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630 KEYWDS CANCER, LYMPHOMA, INHIBITOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR G.W.COLLIE,Y.-V.LE BIHAN,R.L.M.VAN MONTFORT REVDAT 3 31-JAN-24 7OKI 1 REMARK REVDAT 2 22-DEC-21 7OKI 1 JRNL REVDAT 1 08-DEC-21 7OKI 0 JRNL AUTH M.G.LLOYD,R.HUCKVALE,K.J.CHEUNG,M.J.RODRIGUES,G.W.COLLIE, JRNL AUTH 2 O.A.PIERRAT,M.GATTI IOU,M.CARTER,O.A.DAVIS,P.C.MCANDREW, JRNL AUTH 3 E.GUNNELL,Y.V.LE BIHAN,R.TALBOT,A.T.HENLEY,L.D.JOHNSON, JRNL AUTH 4 A.HAYES,M.D.BRIGHT,F.I.RAYNAUD,M.MENICONI,R.BURKE, JRNL AUTH 5 R.L.M.VAN MONTFORT,O.W.ROSSANESE,B.R.BELLENIE,S.HOELDER JRNL TITL INTO DEEP WATER: OPTIMIZING BCL6 INHIBITORS BY GROWING INTO JRNL TITL 2 A SOLVATED POCKET. JRNL REF J.MED.CHEM. V. 64 17079 2021 JRNL REFN ISSN 0022-2623 JRNL PMID 34846884 JRNL DOI 10.1021/ACS.JMEDCHEM.1C00946 REMARK 2 REMARK 2 RESOLUTION. 1.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 29884 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 1540 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.61 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.62 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.23 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 598 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2453 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 565 REMARK 3 BIN R VALUE (WORKING SET) : 0.2406 REMARK 3 BIN FREE R VALUE : 0.3296 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.52 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 33 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1022 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 153 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.52 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.58400 REMARK 3 B22 (A**2) : -1.58400 REMARK 3 B33 (A**2) : 3.16790 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.200 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.068 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.070 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.062 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.065 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1231 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 1674 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 449 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 233 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1231 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 163 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : 25 ; 1.000 ; HARMONIC REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 1555 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.97 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.45 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 12.86 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|5 - 27} REMARK 3 ORIGIN FOR THE GROUP (A): 28.3695 -27.9560 11.5077 REMARK 3 T TENSOR REMARK 3 T11: -0.0294 T22: -0.0204 REMARK 3 T33: -0.0205 T12: -0.0211 REMARK 3 T13: 0.0084 T23: -0.0181 REMARK 3 L TENSOR REMARK 3 L11: 3.6181 L22: 1.4225 REMARK 3 L33: 6.2125 L12: 0.7633 REMARK 3 L13: 2.5685 L23: 1.3720 REMARK 3 S TENSOR REMARK 3 S11: 0.0112 S12: -0.0155 S13: -0.1000 REMARK 3 S21: 0.0596 S22: -0.0277 S23: 0.0494 REMARK 3 S31: 0.2350 S32: -0.3605 S33: 0.0165 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|28 - 40} REMARK 3 ORIGIN FOR THE GROUP (A): 41.3307 -15.1838 27.8241 REMARK 3 T TENSOR REMARK 3 T11: 0.0736 T22: 0.1002 REMARK 3 T33: 0.0591 T12: -0.0163 REMARK 3 T13: -0.0377 T23: -0.0410 REMARK 3 L TENSOR REMARK 3 L11: 0.9103 L22: 2.6592 REMARK 3 L33: 0.4509 L12: 0.2674 REMARK 3 L13: 0.3088 L23: -0.0972 REMARK 3 S TENSOR REMARK 3 S11: 0.1115 S12: -0.0932 S13: 0.1329 REMARK 3 S21: 0.2012 S22: 0.1425 S23: -0.3884 REMARK 3 S31: -0.0736 S32: 0.1824 S33: -0.2540 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|41 - 46} REMARK 3 ORIGIN FOR THE GROUP (A): 39.7669 -15.9340 29.0988 REMARK 3 T TENSOR REMARK 3 T11: -0.0776 T22: -0.1041 REMARK 3 T33: -0.1486 T12: -0.0247 REMARK 3 T13: -0.0268 T23: -0.0284 REMARK 3 L TENSOR REMARK 3 L11: -0.1534 L22: 1.1693 REMARK 3 L33: 0.9905 L12: -0.2042 REMARK 3 L13: 1.5022 L23: 2.6430 REMARK 3 S TENSOR REMARK 3 S11: -0.0522 S12: -0.1209 S13: -0.0018 REMARK 3 S21: 0.2762 S22: 0.0630 S23: -0.1417 REMARK 3 S31: -0.0781 S32: 0.1351 S33: -0.0108 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {A|47 - 92} REMARK 3 ORIGIN FOR THE GROUP (A): 33.5538 -10.1509 23.7662 REMARK 3 T TENSOR REMARK 3 T11: -0.0050 T22: -0.0578 REMARK 3 T33: -0.0156 T12: -0.0313 REMARK 3 T13: 0.0204 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 1.2594 L22: 2.6089 REMARK 3 L33: 1.4075 L12: 0.8970 REMARK 3 L13: -0.1177 L23: 0.9290 REMARK 3 S TENSOR REMARK 3 S11: 0.0823 S12: -0.0052 S13: 0.0734 REMARK 3 S21: 0.0402 S22: 0.0141 S23: -0.0443 REMARK 3 S31: -0.1996 S32: 0.0279 S33: -0.0963 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {A|93 - 101} REMARK 3 ORIGIN FOR THE GROUP (A): 22.5463 -23.4030 31.9881 REMARK 3 T TENSOR REMARK 3 T11: 0.0899 T22: 0.0198 REMARK 3 T33: 0.0086 T12: -0.0730 REMARK 3 T13: 0.0358 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 2.5305 L22: 1.2591 REMARK 3 L33: 0.7983 L12: 1.2017 REMARK 3 L13: -0.2453 L23: -2.4335 REMARK 3 S TENSOR REMARK 3 S11: 0.0502 S12: -0.1704 S13: -0.0358 REMARK 3 S21: 0.2292 S22: -0.1368 S23: 0.1148 REMARK 3 S31: 0.1223 S32: 0.0893 S33: 0.0865 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: {A|102 - 129} REMARK 3 ORIGIN FOR THE GROUP (A): 17.6735 -12.9887 30.9905 REMARK 3 T TENSOR REMARK 3 T11: -0.0370 T22: -0.0467 REMARK 3 T33: 0.0035 T12: -0.0299 REMARK 3 T13: 0.0748 T23: -0.0351 REMARK 3 L TENSOR REMARK 3 L11: 5.6817 L22: 4.0268 REMARK 3 L33: 1.4596 L12: 3.4243 REMARK 3 L13: -2.7420 L23: -1.0716 REMARK 3 S TENSOR REMARK 3 S11: 0.1412 S12: 0.1453 S13: 0.3302 REMARK 3 S21: 0.3578 S22: -0.0749 S23: 0.5166 REMARK 3 S31: -0.0918 S32: -0.3049 S33: -0.0664 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: {B|0 - 5} REMARK 3 ORIGIN FOR THE GROUP (A): 19.3472 -32.5647 2.1284 REMARK 3 T TENSOR REMARK 3 T11: -0.0796 T22: 0.0942 REMARK 3 T33: -0.0189 T12: -0.0227 REMARK 3 T13: -0.0184 T23: -0.0459 REMARK 3 L TENSOR REMARK 3 L11: 2.9308 L22: 2.4674 REMARK 3 L33: 0.0049 L12: 2.4594 REMARK 3 L13: 0.1842 L23: -0.0399 REMARK 3 S TENSOR REMARK 3 S11: 0.0747 S12: -0.0340 S13: 0.0038 REMARK 3 S21: -0.0288 S22: 0.0087 S23: 0.0021 REMARK 3 S31: 0.0763 S32: 0.0688 S33: -0.0835 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7OKI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1292115911. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.966 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29885 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.610 REMARK 200 RESOLUTION RANGE LOW (A) : 58.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.61 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.80500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3BIM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 MICROLITER OF THE BCL6-BTB/WVIP REMARK 280 COMPLEX AT 4 MG/ML PLUS 1 MICROLITER OF A CRYSTALLISATION REMARK 280 SOLUTION CONSISTING OF 1 M K2HPO4, 0.7 M NAH2PO4, 75 MM SODIUM REMARK 280 ACETATE BUFFER PH 4.5 AND 2 % DMSO, AGAINST 350 MICROLITER OF REMARK 280 CRYSTALLISATION SOLUTION., PH 7, VAPOR DIFFUSION, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.34333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 110.68667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 83.01500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 138.35833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.67167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.34333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 110.68667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 138.35833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 83.01500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 27.67167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 33.95000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -58.80312 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 27.67167 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 417 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 2 REMARK 465 PRO A 3 REMARK 465 GLY A 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 6 OD2 REMARK 470 ARG A 13 NH1 REMARK 470 GLU A 77 OE1 OE2 REMARK 470 GLU A 99 OE1 REMARK 470 GLU A 115 CG CD OE1 OE2 REMARK 470 ASP A 119 OD1 REMARK 470 LYS A 123 NZ REMARK 470 LYS A 126 CD CE NZ REMARK 470 GLU A 129 O REMARK 470 ALA B 0 N CB REMARK 470 ALA B 5 CA C O CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 39 -128.36 63.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VHZ A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 101 DBREF 7OKI A 5 129 UNP P41182 BCL6_HUMAN 5 129 DBREF 7OKI B 0 5 PDB 7OKI 7OKI 0 5 SEQADV 7OKI GLY A 2 UNP P41182 EXPRESSION TAG SEQADV 7OKI PRO A 3 UNP P41182 EXPRESSION TAG SEQADV 7OKI GLY A 4 UNP P41182 EXPRESSION TAG SEQRES 1 A 128 GLY PRO GLY ALA ASP SER CYS ILE GLN PHE THR ARG HIS SEQRES 2 A 128 ALA SER ASP VAL LEU LEU ASN LEU ASN ARG LEU ARG SER SEQRES 3 A 128 ARG ASP ILE LEU THR ASP VAL VAL ILE VAL VAL SER ARG SEQRES 4 A 128 GLU GLN PHE ARG ALA HIS LYS THR VAL LEU MET ALA CYS SEQRES 5 A 128 SER GLY LEU PHE TYR SER ILE PHE THR ASP GLN LEU LYS SEQRES 6 A 128 CYS ASN LEU SER VAL ILE ASN LEU ASP PRO GLU ILE ASN SEQRES 7 A 128 PRO GLU GLY PHE CYS ILE LEU LEU ASP PHE MET TYR THR SEQRES 8 A 128 SER ARG LEU ASN LEU ARG GLU GLY ASN ILE MET ALA VAL SEQRES 9 A 128 MET ALA THR ALA MET TYR LEU GLN MET GLU HIS VAL VAL SEQRES 10 A 128 ASP THR CYS ARG LYS PHE ILE LYS ALA SER GLU SEQRES 1 B 6 ALA TRP VAL ILE PRO ALA HET VHZ A 201 28 HET EDO A 202 4 HET EDO A 203 4 HET DMS A 204 4 HET DMS A 205 4 HET EDO B 101 4 HETNAM VHZ (2R)-2-[[6-[(2-CHLORANYL-3-CYANO-PYRIDIN-4-YL)AMINO]-2- HETNAM 2 VHZ OXIDANYLIDENE-1H-QUINOLIN-4-YL]AMINO]-N-METHYL- HETNAM 3 VHZ PROPANAMIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM DMS DIMETHYL SULFOXIDE HETSYN VHZ (2R)-2-[[6-[(2-CHLORO-3-CYANOPYRIDIN-4-YL)AMINO]-2-OXO- HETSYN 2 VHZ 1H-QUINOLIN-4-YL]AMINO]-N-METHYLPROPANAMIDE; 142478375 HETSYN EDO ETHYLENE GLYCOL FORMUL 3 VHZ C19 H17 CL N6 O2 FORMUL 4 EDO 3(C2 H6 O2) FORMUL 6 DMS 2(C2 H6 O S) FORMUL 9 HOH *153(H2 O) HELIX 1 AA1 ARG A 13 ARG A 28 1 16 HELIX 2 AA2 HIS A 46 SER A 54 1 9 HELIX 3 AA3 SER A 54 THR A 62 1 9 HELIX 4 AA4 LEU A 65 LEU A 69 5 5 HELIX 5 AA5 ASN A 79 SER A 93 1 15 HELIX 6 AA6 ASN A 101 GLN A 113 1 13 HELIX 7 AA7 MET A 114 GLU A 129 1 16 SHEET 1 AA1 2 GLN A 10 PHE A 11 0 SHEET 2 AA1 2 TRP B 1 VAL B 2 -1 O VAL B 2 N GLN A 10 SHEET 1 AA2 3 GLU A 41 ALA A 45 0 SHEET 2 AA2 3 VAL A 34 VAL A 38 -1 N ILE A 36 O PHE A 43 SHEET 3 AA2 3 VAL A 71 ASN A 73 1 O ILE A 72 N VAL A 37 SITE 1 AC1 17 ASP A 17 ASN A 21 ARG A 24 LEU A 25 SITE 2 AC1 17 ARG A 28 MET A 51 ALA A 52 CYS A 53 SITE 3 AC1 17 GLY A 55 TYR A 58 GLN A 113 MET A 114 SITE 4 AC1 17 GLU A 115 HIS A 116 HOH A 345 HOH A 358 SITE 5 AC1 17 HOH A 395 SITE 1 AC2 4 ASP A 63 GLN A 64 ARG A 98 GLU A 99 SITE 1 AC3 3 HOH A 330 ALA B 5 HOH B 204 SITE 1 AC4 1 GLU A 99 SITE 1 AC5 3 ASN A 73 TRP B 1 VAL B 2 CRYST1 67.900 67.900 166.030 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014728 0.008503 0.000000 0.00000 SCALE2 0.000000 0.017006 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006023 0.00000