HEADER TRANSCRIPTION 17-MAY-21 7OKJ TITLE CRYSTAL STRUCTURE OF HUMAN BCL6 BTB DOMAIN IN COMPLEX WITH COMPOUND TITLE 2 12C AND ITS ENANTIOMER 12B COMPND MOL_ID: 1; COMPND 2 MOLECULE: B-CELL LYMPHOMA 6 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BCL-6,B-CELL LYMPHOMA 5 PROTEIN,BCL-5,PROTEIN LAZ-3,ZINC COMPND 5 FINGER AND BTB DOMAIN-CONTAINING PROTEIN 27,ZINC FINGER PROTEIN 51; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ALA-TRP-VAL-ILE-PRO-ALA; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BCL6, BCL5, LAZ3, ZBTB27, ZNF51; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: AI; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET48B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630 KEYWDS CANCER, LYMPHOMA, INHIBITOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR G.W.COLLIE,Y.-V.LE BIHAN,R.L.M.VAN MONTFORT REVDAT 3 31-JAN-24 7OKJ 1 REMARK REVDAT 2 22-DEC-21 7OKJ 1 JRNL REVDAT 1 08-DEC-21 7OKJ 0 JRNL AUTH M.G.LLOYD,R.HUCKVALE,K.J.CHEUNG,M.J.RODRIGUES,G.W.COLLIE, JRNL AUTH 2 O.A.PIERRAT,M.GATTI IOU,M.CARTER,O.A.DAVIS,P.C.MCANDREW, JRNL AUTH 3 E.GUNNELL,Y.V.LE BIHAN,R.TALBOT,A.T.HENLEY,L.D.JOHNSON, JRNL AUTH 4 A.HAYES,M.D.BRIGHT,F.I.RAYNAUD,M.MENICONI,R.BURKE, JRNL AUTH 5 R.L.M.VAN MONTFORT,O.W.ROSSANESE,B.R.BELLENIE,S.HOELDER JRNL TITL INTO DEEP WATER: OPTIMIZING BCL6 INHIBITORS BY GROWING INTO JRNL TITL 2 A SOLVATED POCKET. JRNL REF J.MED.CHEM. V. 64 17079 2021 JRNL REFN ISSN 0022-2623 JRNL PMID 34846884 JRNL DOI 10.1021/ACS.JMEDCHEM.1C00946 REMARK 2 REMARK 2 RESOLUTION. 1.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 (19-MAR-2020) REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 41944 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 2155 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.43 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.44 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 803 REMARK 3 BIN R VALUE (WORKING SET) : 0.2308 REMARK 3 BIN FREE R VALUE : 0.2675 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.29 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 36 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1017 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 82 REMARK 3 SOLVENT ATOMS : 198 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.93690 REMARK 3 B22 (A**2) : -0.93690 REMARK 3 B33 (A**2) : 1.87380 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.170 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.052 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.051 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.047 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.046 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1239 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 1690 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 454 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 257 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1239 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 163 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : 19 ; 1.000 ; HARMONIC REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 1403 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.95 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.56 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 13.34 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|5 - 27} REMARK 3 ORIGIN FOR THE GROUP (A): 96.4404 -27.4975 12.4509 REMARK 3 T TENSOR REMARK 3 T11: -0.0048 T22: 0.0179 REMARK 3 T33: -0.0065 T12: -0.0192 REMARK 3 T13: -0.0076 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 1.8159 L22: 0.2516 REMARK 3 L33: 3.4490 L12: 0.5520 REMARK 3 L13: 1.9557 L23: 0.9978 REMARK 3 S TENSOR REMARK 3 S11: -0.0152 S12: -0.0109 S13: 0.0167 REMARK 3 S21: 0.0951 S22: -0.0241 S23: -0.0098 REMARK 3 S31: 0.1357 S32: -0.1308 S33: 0.0393 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|28 - 40} REMARK 3 ORIGIN FOR THE GROUP (A): 108.8716 -15.3349 27.0044 REMARK 3 T TENSOR REMARK 3 T11: 0.0018 T22: 0.0161 REMARK 3 T33: 0.0049 T12: -0.0189 REMARK 3 T13: -0.0213 T23: -0.0329 REMARK 3 L TENSOR REMARK 3 L11: -0.2889 L22: 1.2780 REMARK 3 L33: 1.6121 L12: -0.1187 REMARK 3 L13: 0.1877 L23: 0.7401 REMARK 3 S TENSOR REMARK 3 S11: 0.0450 S12: 0.0468 S13: 0.0154 REMARK 3 S21: 0.1320 S22: 0.0801 S23: -0.2437 REMARK 3 S31: -0.0960 S32: 0.2084 S33: -0.1251 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|41 - 46} REMARK 3 ORIGIN FOR THE GROUP (A): 107.1103 -15.7473 29.0181 REMARK 3 T TENSOR REMARK 3 T11: 0.0255 T22: 0.0075 REMARK 3 T33: 0.0009 T12: -0.0218 REMARK 3 T13: -0.0091 T23: -0.0155 REMARK 3 L TENSOR REMARK 3 L11: -0.1282 L22: 1.6207 REMARK 3 L33: 4.4342 L12: -0.3568 REMARK 3 L13: 1.1416 L23: 1.6610 REMARK 3 S TENSOR REMARK 3 S11: -0.0248 S12: 0.0601 S13: -0.0171 REMARK 3 S21: 0.1768 S22: 0.0815 S23: -0.0729 REMARK 3 S31: 0.0060 S32: 0.1760 S33: -0.0566 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {A|47 - 68} REMARK 3 ORIGIN FOR THE GROUP (A): 101.8145 -6.5267 17.9143 REMARK 3 T TENSOR REMARK 3 T11: 0.0463 T22: -0.0256 REMARK 3 T33: -0.0041 T12: -0.0256 REMARK 3 T13: 0.0218 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 1.1294 L22: 1.7330 REMARK 3 L33: 0.7788 L12: 1.1417 REMARK 3 L13: -0.5565 L23: 0.7708 REMARK 3 S TENSOR REMARK 3 S11: 0.0439 S12: 0.0276 S13: -0.0366 REMARK 3 S21: -0.1373 S22: 0.0491 S23: 0.0355 REMARK 3 S31: -0.1568 S32: 0.0081 S33: -0.0930 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {A|69 - 92} REMARK 3 ORIGIN FOR THE GROUP (A): 100.1420 -13.1601 29.3076 REMARK 3 T TENSOR REMARK 3 T11: 0.0326 T22: -0.0162 REMARK 3 T33: -0.0005 T12: -0.0391 REMARK 3 T13: 0.0106 T23: -0.0175 REMARK 3 L TENSOR REMARK 3 L11: 0.0407 L22: 1.1946 REMARK 3 L33: 0.5821 L12: 0.3485 REMARK 3 L13: -0.2866 L23: 0.1331 REMARK 3 S TENSOR REMARK 3 S11: 0.1079 S12: 0.0146 S13: -0.0486 REMARK 3 S21: 0.1470 S22: -0.0348 S23: -0.0623 REMARK 3 S31: -0.0369 S32: -0.0306 S33: -0.0731 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: {A|93 - 101} REMARK 3 ORIGIN FOR THE GROUP (A): 89.7023 -22.5704 32.6608 REMARK 3 T TENSOR REMARK 3 T11: 0.0383 T22: 0.0081 REMARK 3 T33: -0.0235 T12: -0.0677 REMARK 3 T13: 0.0271 T23: -0.0150 REMARK 3 L TENSOR REMARK 3 L11: 0.6318 L22: 0.5708 REMARK 3 L33: 3.4989 L12: 0.3521 REMARK 3 L13: -1.3608 L23: -0.1838 REMARK 3 S TENSOR REMARK 3 S11: 0.0179 S12: -0.0089 S13: -0.0816 REMARK 3 S21: 0.1423 S22: -0.1300 S23: 0.0398 REMARK 3 S31: 0.1903 S32: 0.1175 S33: 0.1121 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: {A|102 - 114} REMARK 3 ORIGIN FOR THE GROUP (A): 90.8706 -10.2908 30.7656 REMARK 3 T TENSOR REMARK 3 T11: 0.0236 T22: -0.0235 REMARK 3 T33: 0.0180 T12: -0.0314 REMARK 3 T13: 0.0465 T23: -0.0299 REMARK 3 L TENSOR REMARK 3 L11: 1.3874 L22: 2.2636 REMARK 3 L33: 0.9607 L12: 1.9892 REMARK 3 L13: -0.9957 L23: -1.4354 REMARK 3 S TENSOR REMARK 3 S11: 0.1708 S12: -0.0344 S13: 0.1877 REMARK 3 S21: 0.1522 S22: -0.1145 S23: 0.1557 REMARK 3 S31: -0.0837 S32: -0.0236 S33: -0.0563 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: {A|115 - 129} REMARK 3 ORIGIN FOR THE GROUP (A): 80.8135 -14.8961 31.4135 REMARK 3 T TENSOR REMARK 3 T11: -0.0196 T22: 0.0062 REMARK 3 T33: 0.0500 T12: -0.0435 REMARK 3 T13: 0.0727 T23: -0.0482 REMARK 3 L TENSOR REMARK 3 L11: 2.0503 L22: 4.1253 REMARK 3 L33: 0.0401 L12: 1.8329 REMARK 3 L13: -2.5525 L23: -1.3997 REMARK 3 S TENSOR REMARK 3 S11: -0.0164 S12: 0.3198 S13: 0.2745 REMARK 3 S21: 0.2919 S22: -0.0312 S23: 0.3214 REMARK 3 S31: 0.0987 S32: -0.0893 S33: 0.0477 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: {B|0 - 5} REMARK 3 ORIGIN FOR THE GROUP (A): 86.6757 -31.4378 2.4162 REMARK 3 T TENSOR REMARK 3 T11: -0.0544 T22: 0.0616 REMARK 3 T33: -0.0094 T12: -0.0363 REMARK 3 T13: 0.0089 T23: -0.0365 REMARK 3 L TENSOR REMARK 3 L11: 5.5198 L22: 0.7319 REMARK 3 L33: 0.0000 L12: 2.2273 REMARK 3 L13: 1.0770 L23: 1.8676 REMARK 3 S TENSOR REMARK 3 S11: 0.1320 S12: -0.0781 S13: -0.0387 REMARK 3 S21: -0.0875 S22: 0.0353 S23: 0.0494 REMARK 3 S31: 0.0872 S32: -0.0052 S33: -0.1672 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7OKJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1292115916. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.966 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41944 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.430 REMARK 200 RESOLUTION RANGE LOW (A) : 58.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.10 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.46 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.09400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3BIM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 MICROLITER OF THE BCL6-BTB/WVIP REMARK 280 COMPLEX AT 4 MG/ML PLUS 1 MICROLITER OF A CRYSTALLISATION REMARK 280 SOLUTION CONSISTING OF 1 M K2HPO4, 0.7 M NAH2PO4, 75 MM SODIUM REMARK 280 ACETATE BUFFER PH 4.5 AND 2 % DMSO, AGAINST 350 MICROLITER OF REMARK 280 CRYSTALLISATION SOLUTION., PH 7, VAPOR DIFFUSION, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.16333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 110.32667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 82.74500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 137.90833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.58167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.16333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 110.32667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 137.90833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 82.74500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 27.58167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 67.47000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -116.86147 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 27.58167 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 336 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 408 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 480 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 482 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 488 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 2 REMARK 465 PRO A 3 REMARK 465 GLY A 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 6 OD2 REMARK 470 ARG A 13 NE CZ NH1 NH2 REMARK 470 GLN A 64 OE1 REMARK 470 GLU A 77 OE1 OE2 REMARK 470 GLU A 99 OE1 REMARK 470 GLU A 115 CG CD OE1 OE2 REMARK 470 LYS A 123 CD CE NZ REMARK 470 LYS A 126 CD CE NZ REMARK 470 GLU A 129 O REMARK 470 ALA B 0 N CB REMARK 470 ALA B 5 CA C O CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 39 -122.05 64.04 REMARK 500 SER A 93 -0.82 74.99 REMARK 500 GLN A 113 66.62 64.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VHN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VHZ A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 101 DBREF 7OKJ A 5 129 UNP P41182 BCL6_HUMAN 5 129 DBREF 7OKJ B 0 5 PDB 7OKJ 7OKJ 0 5 SEQADV 7OKJ GLY A 2 UNP P41182 EXPRESSION TAG SEQADV 7OKJ PRO A 3 UNP P41182 EXPRESSION TAG SEQADV 7OKJ GLY A 4 UNP P41182 EXPRESSION TAG SEQRES 1 A 128 GLY PRO GLY ALA ASP SER CYS ILE GLN PHE THR ARG HIS SEQRES 2 A 128 ALA SER ASP VAL LEU LEU ASN LEU ASN ARG LEU ARG SER SEQRES 3 A 128 ARG ASP ILE LEU THR ASP VAL VAL ILE VAL VAL SER ARG SEQRES 4 A 128 GLU GLN PHE ARG ALA HIS LYS THR VAL LEU MET ALA CYS SEQRES 5 A 128 SER GLY LEU PHE TYR SER ILE PHE THR ASP GLN LEU LYS SEQRES 6 A 128 CYS ASN LEU SER VAL ILE ASN LEU ASP PRO GLU ILE ASN SEQRES 7 A 128 PRO GLU GLY PHE CYS ILE LEU LEU ASP PHE MET TYR THR SEQRES 8 A 128 SER ARG LEU ASN LEU ARG GLU GLY ASN ILE MET ALA VAL SEQRES 9 A 128 MET ALA THR ALA MET TYR LEU GLN MET GLU HIS VAL VAL SEQRES 10 A 128 ASP THR CYS ARG LYS PHE ILE LYS ALA SER GLU SEQRES 1 B 6 ALA TRP VAL ILE PRO ALA HET VHN A 201 28 HET VHZ A 202 28 HET EDO A 203 4 HET EDO A 204 4 HET EDO A 205 4 HET EDO A 206 4 HET EDO A 207 4 HET CL A 208 1 HET CL A 209 1 HET EDO B 101 4 HETNAM VHN (2S)-2-[[6-[(2-CHLORANYL-3-CYANO-PYRIDIN-4-YL)AMINO]-2- HETNAM 2 VHN OXIDANYLIDENE-1H-QUINOLIN-4-YL]AMINO]-N-METHYL- HETNAM 3 VHN PROPANAMIDE HETNAM VHZ (2R)-2-[[6-[(2-CHLORANYL-3-CYANO-PYRIDIN-4-YL)AMINO]-2- HETNAM 2 VHZ OXIDANYLIDENE-1H-QUINOLIN-4-YL]AMINO]-N-METHYL- HETNAM 3 VHZ PROPANAMIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETSYN VHN (2S)-2-[[6-[(2-CHLORO-3-CYANOPYRIDIN-4-YL)AMINO]-2-OXO- HETSYN 2 VHN 1H-QUINOLIN-4-YL]AMINO]-N-METHYLPROPANAMIDE HETSYN VHZ (2R)-2-[[6-[(2-CHLORO-3-CYANOPYRIDIN-4-YL)AMINO]-2-OXO- HETSYN 2 VHZ 1H-QUINOLIN-4-YL]AMINO]-N-METHYLPROPANAMIDE; 142478375 HETSYN EDO ETHYLENE GLYCOL FORMUL 3 VHN C19 H17 CL N6 O2 FORMUL 4 VHZ C19 H17 CL N6 O2 FORMUL 5 EDO 6(C2 H6 O2) FORMUL 10 CL 2(CL 1-) FORMUL 13 HOH *198(H2 O) HELIX 1 AA1 ARG A 13 ARG A 28 1 16 HELIX 2 AA2 HIS A 46 SER A 54 1 9 HELIX 3 AA3 SER A 54 ASP A 63 1 10 HELIX 4 AA4 LEU A 65 LEU A 69 5 5 HELIX 5 AA5 ASN A 79 SER A 93 1 15 HELIX 6 AA6 ASN A 101 GLN A 113 1 13 HELIX 7 AA7 MET A 114 SER A 128 1 15 SHEET 1 AA1 2 GLN A 10 PHE A 11 0 SHEET 2 AA1 2 TRP B 1 VAL B 2 -1 O VAL B 2 N GLN A 10 SHEET 1 AA2 3 GLU A 41 ALA A 45 0 SHEET 2 AA2 3 VAL A 34 VAL A 38 -1 N ILE A 36 O PHE A 43 SHEET 3 AA2 3 VAL A 71 ASN A 73 1 O ILE A 72 N VAL A 37 SITE 1 AC1 19 ASN A 21 ARG A 24 LEU A 25 ARG A 28 SITE 2 AC1 19 MET A 51 ALA A 52 CYS A 53 GLY A 55 SITE 3 AC1 19 TYR A 58 GLN A 113 GLU A 115 VHZ A 202 SITE 4 AC1 19 HOH A 310 HOH A 317 HOH A 349 HOH A 388 SITE 5 AC1 19 HOH A 404 HOH A 423 HOH A 442 SITE 1 AC2 22 ASP A 17 ASN A 21 ARG A 24 LEU A 25 SITE 2 AC2 22 ARG A 28 MET A 51 ALA A 52 CYS A 53 SITE 3 AC2 22 GLY A 55 TYR A 58 GLN A 113 MET A 114 SITE 4 AC2 22 GLU A 115 HIS A 116 VHN A 201 HOH A 325 SITE 5 AC2 22 HOH A 346 HOH A 349 HOH A 398 HOH A 404 SITE 6 AC2 22 HOH A 434 HOH A 474 SITE 1 AC3 4 ASP A 63 GLN A 64 ARG A 98 GLU A 99 SITE 1 AC4 5 ARG A 28 ASP A 29 HOH A 319 HOH A 344 SITE 2 AC4 5 HOH A 357 SITE 1 AC5 2 TYR A 111 ALA B 5 SITE 1 AC6 4 GLU A 99 ILE A 125 SER A 128 HOH A 302 SITE 1 AC7 2 GLN A 42 HOH A 335 SITE 1 AC8 3 HIS A 116 VAL A 117 HOH A 349 SITE 1 AC9 1 SER A 70 SITE 1 AD1 5 ILE A 72 ASN A 73 TRP B 1 VAL B 2 SITE 2 AD1 5 HOH B 201 CRYST1 67.470 67.470 165.490 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014821 0.008557 0.000000 0.00000 SCALE2 0.000000 0.017114 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006043 0.00000