HEADER TRANSCRIPTION 17-MAY-21 7OKL TITLE CRYSTAL STRUCTURE OF HUMAN BCL6 BTB DOMAIN IN COMPLEX WITH COMPOUND TITLE 2 13E COMPND MOL_ID: 1; COMPND 2 MOLECULE: B-CELL LYMPHOMA 6 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BCL-6,B-CELL LYMPHOMA 5 PROTEIN,BCL-5,PROTEIN LAZ-3,ZINC COMPND 5 FINGER AND BTB DOMAIN-CONTAINING PROTEIN 27,ZINC FINGER PROTEIN 51; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ALA-TRP-VAL-ILE-PRO-ALA; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BCL6, BCL5, LAZ3, ZBTB27, ZNF51; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: AI; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET48B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630 KEYWDS CANCER, LYMPHOMA, INHIBITOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR M.J.RODRIGUES,Y.-V.LE BIHAN,R.L.M.VAN MONTFORT REVDAT 3 31-JAN-24 7OKL 1 REMARK REVDAT 2 22-DEC-21 7OKL 1 JRNL REVDAT 1 08-DEC-21 7OKL 0 JRNL AUTH M.G.LLOYD,R.HUCKVALE,K.J.CHEUNG,M.J.RODRIGUES,G.W.COLLIE, JRNL AUTH 2 O.A.PIERRAT,M.GATTI IOU,M.CARTER,O.A.DAVIS,P.C.MCANDREW, JRNL AUTH 3 E.GUNNELL,Y.V.LE BIHAN,R.TALBOT,A.T.HENLEY,L.D.JOHNSON, JRNL AUTH 4 A.HAYES,M.D.BRIGHT,F.I.RAYNAUD,M.MENICONI,R.BURKE, JRNL AUTH 5 R.L.M.VAN MONTFORT,O.W.ROSSANESE,B.R.BELLENIE,S.HOELDER JRNL TITL INTO DEEP WATER: OPTIMIZING BCL6 INHIBITORS BY GROWING INTO JRNL TITL 2 A SOLVATED POCKET. JRNL REF J.MED.CHEM. V. 64 17079 2021 JRNL REFN ISSN 0022-2623 JRNL PMID 34846884 JRNL DOI 10.1021/ACS.JMEDCHEM.1C00946 REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 72806 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 3697 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.21 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.66 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 1457 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2275 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1378 REMARK 3 BIN R VALUE (WORKING SET) : 0.2277 REMARK 3 BIN FREE R VALUE : 0.2251 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.42 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 79 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1028 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 216 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.44 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.88850 REMARK 3 B22 (A**2) : -0.88850 REMARK 3 B33 (A**2) : 1.77710 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.150 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.036 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.036 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.033 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.033 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.971 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1329 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 1814 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 487 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 260 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1329 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 171 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : 33 ; 1.000 ; HARMONIC REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 1662 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 0.94 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.68 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 14.02 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|5 - A|27 } REMARK 3 ORIGIN FOR THE GROUP (A): 29.3193 -28.1625 12.6542 REMARK 3 T TENSOR REMARK 3 T11: -0.0087 T22: 0.0193 REMARK 3 T33: -0.0005 T12: -0.0255 REMARK 3 T13: -0.0010 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 1.0895 L22: 0.3305 REMARK 3 L33: 2.2998 L12: 0.2530 REMARK 3 L13: 1.1491 L23: 0.7870 REMARK 3 S TENSOR REMARK 3 S11: -0.0375 S12: -0.0211 S13: 0.0011 REMARK 3 S21: 0.1092 S22: -0.0242 S23: -0.0014 REMARK 3 S31: 0.1211 S32: -0.1444 S33: 0.0618 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|28 - A|40 } REMARK 3 ORIGIN FOR THE GROUP (A): 41.9212 -15.3041 27.3925 REMARK 3 T TENSOR REMARK 3 T11: -0.0014 T22: 0.0157 REMARK 3 T33: 0.0164 T12: -0.0144 REMARK 3 T13: -0.0162 T23: -0.0267 REMARK 3 L TENSOR REMARK 3 L11: -0.0738 L22: 0.7701 REMARK 3 L33: 1.1085 L12: -0.0084 REMARK 3 L13: 0.4211 L23: 0.3630 REMARK 3 S TENSOR REMARK 3 S11: 0.0251 S12: 0.0241 S13: 0.0174 REMARK 3 S21: 0.1094 S22: 0.1049 S23: -0.1659 REMARK 3 S31: -0.1029 S32: 0.2594 S33: -0.1300 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|41 - A|46 } REMARK 3 ORIGIN FOR THE GROUP (A): 40.1210 -15.8925 29.4528 REMARK 3 T TENSOR REMARK 3 T11: 0.0325 T22: -0.0076 REMARK 3 T33: 0.0122 T12: -0.0114 REMARK 3 T13: -0.0120 T23: -0.0193 REMARK 3 L TENSOR REMARK 3 L11: 0.6507 L22: 0.7850 REMARK 3 L33: 5.7567 L12: -0.1411 REMARK 3 L13: 0.6711 L23: 1.4378 REMARK 3 S TENSOR REMARK 3 S11: -0.0111 S12: 0.0191 S13: 0.0192 REMARK 3 S21: 0.1571 S22: 0.1049 S23: -0.0550 REMARK 3 S31: -0.0101 S32: 0.1537 S33: -0.0938 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { A|47 - A|68 } REMARK 3 ORIGIN FOR THE GROUP (A): 34.2838 -7.0907 18.3456 REMARK 3 T TENSOR REMARK 3 T11: 0.0333 T22: -0.0192 REMARK 3 T33: 0.0059 T12: -0.0203 REMARK 3 T13: 0.0184 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.6575 L22: 1.2099 REMARK 3 L33: 0.7811 L12: 0.9565 REMARK 3 L13: -0.3049 L23: 0.4996 REMARK 3 S TENSOR REMARK 3 S11: 0.0247 S12: 0.0439 S13: -0.0255 REMARK 3 S21: -0.0910 S22: 0.0408 S23: 0.0424 REMARK 3 S31: -0.1326 S32: 0.0042 S33: -0.0655 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { A|69 - A|79 } REMARK 3 ORIGIN FOR THE GROUP (A): 36.0494 -6.2387 31.7449 REMARK 3 T TENSOR REMARK 3 T11: 0.0589 T22: -0.0453 REMARK 3 T33: -0.0026 T12: -0.0472 REMARK 3 T13: 0.0205 T23: -0.0238 REMARK 3 L TENSOR REMARK 3 L11: 0.1824 L22: 0.7477 REMARK 3 L33: 2.5891 L12: -0.0129 REMARK 3 L13: -0.7813 L23: 0.0922 REMARK 3 S TENSOR REMARK 3 S11: 0.1582 S12: -0.0117 S13: 0.0351 REMARK 3 S21: 0.1620 S22: -0.0323 S23: -0.1133 REMARK 3 S31: -0.2263 S32: 0.0376 S33: -0.1258 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { A|80 - A|92 } REMARK 3 ORIGIN FOR THE GROUP (A): 30.0474 -18.7671 28.9367 REMARK 3 T TENSOR REMARK 3 T11: 0.0237 T22: -0.0089 REMARK 3 T33: 0.0099 T12: -0.0324 REMARK 3 T13: 0.0033 T23: -0.0143 REMARK 3 L TENSOR REMARK 3 L11: -0.1049 L22: 0.9772 REMARK 3 L33: 1.6961 L12: 0.0140 REMARK 3 L13: -0.2616 L23: 1.1478 REMARK 3 S TENSOR REMARK 3 S11: 0.0327 S12: 0.0232 S13: -0.0109 REMARK 3 S21: 0.1333 S22: -0.0198 S23: -0.0305 REMARK 3 S31: 0.0915 S32: 0.0105 S33: -0.0129 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: { A|93 - A|101 } REMARK 3 ORIGIN FOR THE GROUP (A): 22.6520 -23.1752 32.6906 REMARK 3 T TENSOR REMARK 3 T11: 0.0314 T22: -0.0022 REMARK 3 T33: -0.0077 T12: -0.0571 REMARK 3 T13: 0.0284 T23: -0.0181 REMARK 3 L TENSOR REMARK 3 L11: 0.6312 L22: 0.7469 REMARK 3 L33: 3.0996 L12: 0.3746 REMARK 3 L13: -1.2860 L23: 0.5877 REMARK 3 S TENSOR REMARK 3 S11: -0.0084 S12: 0.0147 S13: -0.0660 REMARK 3 S21: 0.1362 S22: -0.1171 S23: 0.0621 REMARK 3 S31: 0.1992 S32: 0.0802 S33: 0.1255 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: { A|102 - A|114 } REMARK 3 ORIGIN FOR THE GROUP (A): 23.6947 -10.4618 31.3298 REMARK 3 T TENSOR REMARK 3 T11: 0.0204 T22: -0.0190 REMARK 3 T33: 0.0210 T12: -0.0273 REMARK 3 T13: 0.0389 T23: -0.0271 REMARK 3 L TENSOR REMARK 3 L11: 0.6949 L22: 1.0592 REMARK 3 L33: 1.3619 L12: 0.8792 REMARK 3 L13: -0.7161 L23: -0.8185 REMARK 3 S TENSOR REMARK 3 S11: 0.1243 S12: -0.0194 S13: 0.1158 REMARK 3 S21: 0.0726 S22: -0.1141 S23: 0.1082 REMARK 3 S31: -0.0610 S32: -0.0736 S33: -0.0102 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: { A|115 - A|129 } REMARK 3 ORIGIN FOR THE GROUP (A): 13.7218 -14.6113 31.3539 REMARK 3 T TENSOR REMARK 3 T11: -0.0238 T22: 0.0188 REMARK 3 T33: 0.0344 T12: -0.0252 REMARK 3 T13: 0.0579 T23: -0.0465 REMARK 3 L TENSOR REMARK 3 L11: 1.8408 L22: 4.1190 REMARK 3 L33: 1.2722 L12: 2.1151 REMARK 3 L13: -2.3078 L23: -1.8236 REMARK 3 S TENSOR REMARK 3 S11: 0.0631 S12: 0.3037 S13: 0.1197 REMARK 3 S21: 0.2469 S22: -0.0717 S23: 0.2247 REMARK 3 S31: -0.0461 S32: -0.2001 S33: 0.0086 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: { B|0 - B|5 } REMARK 3 ORIGIN FOR THE GROUP (A): 19.6558 -32.8275 2.1294 REMARK 3 T TENSOR REMARK 3 T11: -0.0472 T22: 0.0600 REMARK 3 T33: 0.0033 T12: -0.0357 REMARK 3 T13: -0.0036 T23: -0.0319 REMARK 3 L TENSOR REMARK 3 L11: 2.8623 L22: 0.2612 REMARK 3 L33: 0.5917 L12: 0.5573 REMARK 3 L13: 0.5990 L23: 1.2736 REMARK 3 S TENSOR REMARK 3 S11: 0.1187 S12: -0.0148 S13: -0.0186 REMARK 3 S21: -0.0358 S22: -0.0217 S23: -0.0202 REMARK 3 S31: 0.1372 S32: -0.0548 S33: -0.0971 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7OKL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1292115925. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9282 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72916 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 55.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 12.40 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.90 REMARK 200 R MERGE FOR SHELL (I) : 3.11000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3BIM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 MICROLITER OF THE BCL6-BTB/WVIP REMARK 280 COMPLEX AT 4 MG/ML PLUS 1 MICROLITER OF A CRYSTALLISATION REMARK 280 SOLUTION CONSISTING OF 1 M K2HPO4, 0.7 M NAH2PO4, 75 MM SODIUM REMARK 280 ACETATE BUFFER PH 4.5 AND 2 % DMSO, AGAINST 350 MICROLITER OF REMARK 280 CRYSTALLISATION SOLUTION., PH 7, VAPOR DIFFUSION, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.05667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 112.11333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 84.08500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 140.14167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.02833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 56.05667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 112.11333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 140.14167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 84.08500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 28.02833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 34.14200 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -59.13568 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 28.02833 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 498 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 2 REMARK 465 PRO A 3 REMARK 465 GLY A 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 6 OD2 REMARK 470 ARG A 13 NE CZ NH1 NH2 REMARK 470 GLN A 64 OE1 REMARK 470 LYS A 126 CD CE NZ REMARK 470 ALA B 0 N CB REMARK 470 ALA B 5 CA C O CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 39 -121.86 62.60 REMARK 500 SER A 93 -2.18 78.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VJ5 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 101 DBREF 7OKL A 5 129 UNP P41182 BCL6_HUMAN 5 129 DBREF 7OKL B 0 5 PDB 7OKL 7OKL 0 5 SEQADV 7OKL GLY A 2 UNP P41182 EXPRESSION TAG SEQADV 7OKL PRO A 3 UNP P41182 EXPRESSION TAG SEQADV 7OKL GLY A 4 UNP P41182 EXPRESSION TAG SEQRES 1 A 128 GLY PRO GLY ALA ASP SER CYS ILE GLN PHE THR ARG HIS SEQRES 2 A 128 ALA SER ASP VAL LEU LEU ASN LEU ASN ARG LEU ARG SER SEQRES 3 A 128 ARG ASP ILE LEU THR ASP VAL VAL ILE VAL VAL SER ARG SEQRES 4 A 128 GLU GLN PHE ARG ALA HIS LYS THR VAL LEU MET ALA CYS SEQRES 5 A 128 SER GLY LEU PHE TYR SER ILE PHE THR ASP GLN LEU LYS SEQRES 6 A 128 CYS ASN LEU SER VAL ILE ASN LEU ASP PRO GLU ILE ASN SEQRES 7 A 128 PRO GLU GLY PHE CYS ILE LEU LEU ASP PHE MET TYR THR SEQRES 8 A 128 SER ARG LEU ASN LEU ARG GLU GLY ASN ILE MET ALA VAL SEQRES 9 A 128 MET ALA THR ALA MET TYR LEU GLN MET GLU HIS VAL VAL SEQRES 10 A 128 ASP THR CYS ARG LYS PHE ILE LYS ALA SER GLU SEQRES 1 B 6 ALA TRP VAL ILE PRO ALA HET VJ5 A 201 31 HET EDO A 202 4 HET EDO A 203 4 HET EDO A 204 8 HET EDO A 205 4 HET EDO A 206 4 HET CL A 207 1 HET CL A 208 1 HET CL A 209 1 HET DMS A 210 4 HET EDO B 101 4 HETNAM VJ5 2-CHLORANYL-4-[[1-METHYL-2-OXIDANYLIDENE-4-[[(1R)-1- HETNAM 2 VJ5 PYRIMIDIN-2-YLETHYL]AMINO]QUINOLIN-6- HETNAM 3 VJ5 YL]AMINO]PYRIDINE-3-CARBONITRILE HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETNAM DMS DIMETHYL SULFOXIDE HETSYN VJ5 2-CHLORO-4-[[1-METHYL-2-OXO-4-[[(1R)-1-PYRIMIDIN-2- HETSYN 2 VJ5 YLETHYL]AMINO]QUINOLIN-6-YL]AMINO]PYRIDINE-3- HETSYN 3 VJ5 CARBONITRILE; 135385752 HETSYN EDO ETHYLENE GLYCOL FORMUL 3 VJ5 C22 H18 CL N7 O FORMUL 4 EDO 6(C2 H6 O2) FORMUL 9 CL 3(CL 1-) FORMUL 12 DMS C2 H6 O S FORMUL 14 HOH *216(H2 O) HELIX 1 AA1 ARG A 13 ARG A 28 1 16 HELIX 2 AA2 HIS A 46 SER A 54 1 9 HELIX 3 AA3 SER A 54 ASP A 63 1 10 HELIX 4 AA4 LEU A 65 LEU A 69 5 5 HELIX 5 AA5 ASN A 79 SER A 93 1 15 HELIX 6 AA6 ASN A 101 GLN A 113 1 13 HELIX 7 AA7 MET A 114 SER A 128 1 15 SHEET 1 AA1 2 GLN A 10 PHE A 11 0 SHEET 2 AA1 2 TRP B 1 VAL B 2 -1 O VAL B 2 N GLN A 10 SHEET 1 AA2 3 GLU A 41 ALA A 45 0 SHEET 2 AA2 3 VAL A 34 VAL A 38 -1 N VAL A 38 O GLU A 41 SHEET 3 AA2 3 VAL A 71 ASN A 73 1 O ILE A 72 N VAL A 37 SITE 1 AC1 19 ASP A 17 ASN A 21 ARG A 24 LEU A 25 SITE 2 AC1 19 ARG A 28 MET A 51 ALA A 52 CYS A 53 SITE 3 AC1 19 GLY A 55 TYR A 58 GLN A 113 MET A 114 SITE 4 AC1 19 GLU A 115 HIS A 116 DMS A 210 HOH A 351 SITE 5 AC1 19 HOH A 364 HOH A 369 HOH A 395 SITE 1 AC2 4 ASP A 63 GLN A 64 ARG A 98 GLU A 99 SITE 1 AC3 2 HOH A 309 ALA B 5 SITE 1 AC4 4 GLU A 99 ILE A 125 SER A 128 HOH A 330 SITE 1 AC5 3 GLU A 81 HOH A 306 HOH A 474 SITE 1 AC6 2 GLN A 42 HOH A 359 SITE 1 AC7 1 ARG A 24 SITE 1 AC8 1 SER A 70 SITE 1 AC9 4 VAL A 117 HOH A 351 HOH A 388 HOH A 481 SITE 1 AD1 2 GLU A 115 VJ5 A 201 SITE 1 AD2 5 ILE A 72 ASN A 73 HOH A 324 TRP B 1 SITE 2 AD2 5 HOH B 201 CRYST1 68.284 68.284 168.170 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014645 0.008455 0.000000 0.00000 SCALE2 0.000000 0.016910 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005946 0.00000