HEADER TRANSCRIPTION 17-MAY-21 7OKM TITLE CRYSTAL STRUCTURE OF HUMAN BCL6 BTB DOMAIN IN COMPLEX WITH COMPOUND TITLE 2 13G COMPND MOL_ID: 1; COMPND 2 MOLECULE: B-CELL LYMPHOMA 6 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BCL-6,B-CELL LYMPHOMA 5 PROTEIN,BCL-5,PROTEIN LAZ-3,ZINC COMPND 5 FINGER AND BTB DOMAIN-CONTAINING PROTEIN 27,ZINC FINGER PROTEIN 51; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ALA-TRP-VAL-ILE-PRO-ALA; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BCL6, BCL5, LAZ3, ZBTB27, ZNF51; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: AI; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET48B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630 KEYWDS CANCER, LYMPHOMA, INHIBITOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR M.J.RODRIGUES,Y.-V.LE BIHAN,R.L.M.VAN MONTFORT REVDAT 3 31-JAN-24 7OKM 1 REMARK REVDAT 2 22-DEC-21 7OKM 1 JRNL REVDAT 1 08-DEC-21 7OKM 0 JRNL AUTH M.G.LLOYD,R.HUCKVALE,K.J.CHEUNG,M.J.RODRIGUES,G.W.COLLIE, JRNL AUTH 2 O.A.PIERRAT,M.GATTI IOU,M.CARTER,O.A.DAVIS,P.C.MCANDREW, JRNL AUTH 3 E.GUNNELL,Y.V.LE BIHAN,R.TALBOT,A.T.HENLEY,L.D.JOHNSON, JRNL AUTH 4 A.HAYES,M.D.BRIGHT,F.I.RAYNAUD,M.MENICONI,R.BURKE, JRNL AUTH 5 R.L.M.VAN MONTFORT,O.W.ROSSANESE,B.R.BELLENIE,S.HOELDER JRNL TITL INTO DEEP WATER: OPTIMIZING BCL6 INHIBITORS BY GROWING INTO JRNL TITL 2 A SOLVATED POCKET. JRNL REF J.MED.CHEM. V. 64 17079 2021 JRNL REFN ISSN 0022-2623 JRNL PMID 34846884 JRNL DOI 10.1021/ACS.JMEDCHEM.1C00946 REMARK 2 REMARK 2 RESOLUTION. 1.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 39645 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 1955 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.48 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.49 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.62 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 793 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2350 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 753 REMARK 3 BIN R VALUE (WORKING SET) : 0.2335 REMARK 3 BIN FREE R VALUE : 0.2631 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.04 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 40 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1024 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 61 REMARK 3 SOLVENT ATOMS : 194 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.09 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.67500 REMARK 3 B22 (A**2) : -1.67500 REMARK 3 B33 (A**2) : 3.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.200 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.063 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.063 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.056 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.057 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1245 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 1695 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 448 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 240 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1245 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 160 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : 16 ; 1.000 ; HARMONIC REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 1486 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 0.91 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.17 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 12.91 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|5 - 27} REMARK 3 ORIGIN FOR THE GROUP (A): 29.0082 -27.9778 11.8554 REMARK 3 T TENSOR REMARK 3 T11: -0.0755 T22: -0.0552 REMARK 3 T33: -0.0628 T12: -0.0383 REMARK 3 T13: 0.0063 T23: -0.0217 REMARK 3 L TENSOR REMARK 3 L11: 3.6102 L22: 1.3355 REMARK 3 L33: 5.4748 L12: 0.8984 REMARK 3 L13: 2.4176 L23: 1.5965 REMARK 3 S TENSOR REMARK 3 S11: 0.0398 S12: -0.0016 S13: -0.1356 REMARK 3 S21: 0.1242 S22: -0.0460 S23: 0.0493 REMARK 3 S31: 0.2869 S32: -0.4475 S33: 0.0061 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|28 - 33} REMARK 3 ORIGIN FOR THE GROUP (A): 43.7835 -21.7446 19.5061 REMARK 3 T TENSOR REMARK 3 T11: 0.0386 T22: 0.0993 REMARK 3 T33: 0.1001 T12: 0.0038 REMARK 3 T13: -0.0333 T23: -0.0531 REMARK 3 L TENSOR REMARK 3 L11: 2.1448 L22: 0.8792 REMARK 3 L33: 0.5949 L12: -1.5113 REMARK 3 L13: -0.8219 L23: -0.2817 REMARK 3 S TENSOR REMARK 3 S11: 0.0590 S12: -0.0465 S13: -0.1473 REMARK 3 S21: 0.0079 S22: 0.0636 S23: -0.2916 REMARK 3 S31: 0.1556 S32: 0.2959 S33: -0.1226 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|34 - 40} REMARK 3 ORIGIN FOR THE GROUP (A): 40.0361 -10.6678 33.8828 REMARK 3 T TENSOR REMARK 3 T11: 0.0564 T22: -0.0125 REMARK 3 T33: -0.0457 T12: -0.0245 REMARK 3 T13: -0.0323 T23: -0.0621 REMARK 3 L TENSOR REMARK 3 L11: -0.2299 L22: 0.2669 REMARK 3 L33: 1.3468 L12: 0.1221 REMARK 3 L13: 3.9089 L23: -1.1039 REMARK 3 S TENSOR REMARK 3 S11: -0.1277 S12: -0.2829 S13: 0.0585 REMARK 3 S21: 0.4683 S22: 0.1170 S23: -0.2403 REMARK 3 S31: -0.0226 S32: 0.0941 S33: 0.0107 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {A|41 - 46} REMARK 3 ORIGIN FOR THE GROUP (A): 39.9992 -16.1093 29.3777 REMARK 3 T TENSOR REMARK 3 T11: -0.0031 T22: -0.0379 REMARK 3 T33: -0.0489 T12: -0.0040 REMARK 3 T13: -0.0309 T23: -0.0396 REMARK 3 L TENSOR REMARK 3 L11: 1.3029 L22: 0.3417 REMARK 3 L33: 0.9652 L12: 0.1547 REMARK 3 L13: 1.0383 L23: 0.1906 REMARK 3 S TENSOR REMARK 3 S11: 0.0139 S12: -0.2056 S13: 0.0591 REMARK 3 S21: 0.3074 S22: 0.0625 S23: -0.1289 REMARK 3 S31: -0.0619 S32: 0.1411 S33: -0.0764 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {A|47 - 68} REMARK 3 ORIGIN FOR THE GROUP (A): 34.2751 -7.1839 18.2359 REMARK 3 T TENSOR REMARK 3 T11: 0.0555 T22: -0.0328 REMARK 3 T33: 0.0217 T12: -0.0203 REMARK 3 T13: 0.0309 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 3.7446 L22: 4.3498 REMARK 3 L33: 3.0930 L12: 2.4802 REMARK 3 L13: -1.0635 L23: 1.7323 REMARK 3 S TENSOR REMARK 3 S11: 0.0752 S12: 0.0889 S13: 0.2698 REMARK 3 S21: -0.2908 S22: 0.1040 S23: -0.0207 REMARK 3 S31: -0.4814 S32: 0.0305 S33: -0.1792 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: {A|69 - 92} REMARK 3 ORIGIN FOR THE GROUP (A): 32.7328 -12.9728 30.1697 REMARK 3 T TENSOR REMARK 3 T11: 0.0121 T22: -0.0541 REMARK 3 T33: -0.0189 T12: -0.0445 REMARK 3 T13: 0.0090 T23: -0.0198 REMARK 3 L TENSOR REMARK 3 L11: 0.7298 L22: 2.9474 REMARK 3 L33: 2.4202 L12: 0.6901 REMARK 3 L13: -0.3095 L23: 1.3520 REMARK 3 S TENSOR REMARK 3 S11: 0.1885 S12: -0.1256 S13: 0.0181 REMARK 3 S21: 0.3737 S22: -0.0762 S23: -0.1051 REMARK 3 S31: -0.0229 S32: -0.0566 S33: -0.1123 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: {A|93 - 101} REMARK 3 ORIGIN FOR THE GROUP (A): 22.6886 -23.5538 32.2374 REMARK 3 T TENSOR REMARK 3 T11: 0.0857 T22: 0.0150 REMARK 3 T33: -0.0113 T12: -0.0926 REMARK 3 T13: 0.0426 T23: -0.0165 REMARK 3 L TENSOR REMARK 3 L11: 2.4361 L22: 0.9026 REMARK 3 L33: 0.4251 L12: 1.4759 REMARK 3 L13: -0.0007 L23: -1.4702 REMARK 3 S TENSOR REMARK 3 S11: 0.0822 S12: -0.1579 S13: -0.1009 REMARK 3 S21: 0.3175 S22: -0.2136 S23: 0.1107 REMARK 3 S31: 0.1079 S32: 0.1453 S33: 0.1314 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: {A|102 - 114} REMARK 3 ORIGIN FOR THE GROUP (A): 23.2284 -10.6357 31.3377 REMARK 3 T TENSOR REMARK 3 T11: -0.0730 T22: -0.0803 REMARK 3 T33: -0.0625 T12: -0.0340 REMARK 3 T13: 0.0636 T23: -0.0469 REMARK 3 L TENSOR REMARK 3 L11: 0.6499 L22: 2.7838 REMARK 3 L33: 2.5138 L12: 0.6014 REMARK 3 L13: 0.6181 L23: 0.2459 REMARK 3 S TENSOR REMARK 3 S11: 0.2097 S12: -0.1450 S13: 0.1940 REMARK 3 S21: 0.3559 S22: -0.2078 S23: 0.3606 REMARK 3 S31: -0.1557 S32: -0.5014 S33: -0.0019 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: {A|115 - 129} REMARK 3 ORIGIN FOR THE GROUP (A): 13.7366 -14.9238 31.7178 REMARK 3 T TENSOR REMARK 3 T11: 0.0087 T22: 0.1295 REMARK 3 T33: 0.1034 T12: -0.0788 REMARK 3 T13: 0.0779 T23: -0.1114 REMARK 3 L TENSOR REMARK 3 L11: 6.0835 L22: 8.4504 REMARK 3 L33: 0.0000 L12: -0.2903 REMARK 3 L13: -1.7158 L23: -0.6906 REMARK 3 S TENSOR REMARK 3 S11: -0.0417 S12: 0.3344 S13: 0.0872 REMARK 3 S21: 0.2149 S22: -0.1789 S23: 0.3985 REMARK 3 S31: 0.1259 S32: -0.0198 S33: 0.2206 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: {B|0 - 5} REMARK 3 ORIGIN FOR THE GROUP (A): 19.4121 -32.7975 2.1020 REMARK 3 T TENSOR REMARK 3 T11: -0.0885 T22: 0.0943 REMARK 3 T33: -0.0158 T12: -0.0378 REMARK 3 T13: -0.0179 T23: -0.0802 REMARK 3 L TENSOR REMARK 3 L11: 2.3146 L22: 1.0170 REMARK 3 L33: 0.0350 L12: 1.5224 REMARK 3 L13: -0.1624 L23: 0.2531 REMARK 3 S TENSOR REMARK 3 S11: 0.0732 S12: -0.0404 S13: 0.0351 REMARK 3 S21: -0.0113 S22: 0.0044 S23: 0.0159 REMARK 3 S31: 0.0749 S32: 0.1337 S33: -0.0776 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7OKM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1292115927. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9282 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39743 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.480 REMARK 200 RESOLUTION RANGE LOW (A) : 48.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.20 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 11.40 REMARK 200 R MERGE FOR SHELL (I) : 2.73200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3BIM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 MICROLITER OF THE BCL6-BTB/WVIP REMARK 280 COMPLEX AT 4 MG/ML PLUS 1 MICROLITER OF A CRYSTALLISATION REMARK 280 SOLUTION CONSISTING OF 1 M K2HPO4, 0.7 M NAH2PO4, 75 MM SODIUM REMARK 280 ACETATE BUFFER PH 4.5 AND 2 % DMSO, AGAINST 350 MICROLITER OF REMARK 280 CRYSTALLISATION SOLUTION., PH 7, VAPOR DIFFUSION, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.82533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 111.65067 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 83.73800 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 139.56333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.91267 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.82533 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 111.65067 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 139.56333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 83.73800 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 27.91267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 34.24500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -59.31408 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 27.91267 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 2 REMARK 465 PRO A 3 REMARK 465 GLY A 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 6 OD2 REMARK 470 ARG A 13 NE CZ NH1 NH2 REMARK 470 GLN A 64 OE1 NE2 REMARK 470 LYS A 123 CD CE NZ REMARK 470 LYS A 126 CD CE NZ REMARK 470 ALA B 0 N CB REMARK 470 ALA B 5 CA C O CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 39 -130.14 61.50 REMARK 500 SER A 93 -4.48 79.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VJ2 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 101 DBREF 7OKM A 5 129 UNP P41182 BCL6_HUMAN 5 129 DBREF 7OKM B 0 5 PDB 7OKM 7OKM 0 5 SEQADV 7OKM GLY A 2 UNP P41182 EXPRESSION TAG SEQADV 7OKM PRO A 3 UNP P41182 EXPRESSION TAG SEQADV 7OKM GLY A 4 UNP P41182 EXPRESSION TAG SEQRES 1 A 128 GLY PRO GLY ALA ASP SER CYS ILE GLN PHE THR ARG HIS SEQRES 2 A 128 ALA SER ASP VAL LEU LEU ASN LEU ASN ARG LEU ARG SER SEQRES 3 A 128 ARG ASP ILE LEU THR ASP VAL VAL ILE VAL VAL SER ARG SEQRES 4 A 128 GLU GLN PHE ARG ALA HIS LYS THR VAL LEU MET ALA CYS SEQRES 5 A 128 SER GLY LEU PHE TYR SER ILE PHE THR ASP GLN LEU LYS SEQRES 6 A 128 CYS ASN LEU SER VAL ILE ASN LEU ASP PRO GLU ILE ASN SEQRES 7 A 128 PRO GLU GLY PHE CYS ILE LEU LEU ASP PHE MET TYR THR SEQRES 8 A 128 SER ARG LEU ASN LEU ARG GLU GLY ASN ILE MET ALA VAL SEQRES 9 A 128 MET ALA THR ALA MET TYR LEU GLN MET GLU HIS VAL VAL SEQRES 10 A 128 ASP THR CYS ARG LYS PHE ILE LYS ALA SER GLU SEQRES 1 B 6 ALA TRP VAL ILE PRO ALA HET VJ2 A 201 32 HET EDO A 202 4 HET EDO A 203 4 HET EDO A 204 4 HET EDO A 205 4 HET EDO A 206 4 HET DMS A 207 4 HET CL A 208 1 HET EDO B 101 4 HETNAM VJ2 2-CHLORANYL-4-[[1-METHYL-2-OXIDANYLIDENE-4-(2- HETNAM 2 VJ2 PYRIMIDIN-2-YLPROPAN-2-YLAMINO)QUINOLIN-6- HETNAM 3 VJ2 YL]AMINO]PYRIDINE-3-CARBONITRILE HETNAM EDO 1,2-ETHANEDIOL HETNAM DMS DIMETHYL SULFOXIDE HETNAM CL CHLORIDE ION HETSYN VJ2 2-CHLORO-4-[[1-METHYL-2-OXO-4-(2-PYRIMIDIN-2-YLPROPAN- HETSYN 2 VJ2 2-YLAMINO)QUINOLIN-6-YL]AMINO]PYRIDINE-3-CARBONITRILE; HETSYN 3 VJ2 135385909 HETSYN EDO ETHYLENE GLYCOL FORMUL 3 VJ2 C23 H20 CL N7 O FORMUL 4 EDO 6(C2 H6 O2) FORMUL 9 DMS C2 H6 O S FORMUL 10 CL CL 1- FORMUL 12 HOH *194(H2 O) HELIX 1 AA1 ARG A 13 ARG A 28 1 16 HELIX 2 AA2 HIS A 46 SER A 54 1 9 HELIX 3 AA3 SER A 54 ASP A 63 1 10 HELIX 4 AA4 LEU A 65 LEU A 69 5 5 HELIX 5 AA5 ASN A 79 SER A 93 1 15 HELIX 6 AA6 ASN A 101 GLN A 113 1 13 HELIX 7 AA7 MET A 114 GLU A 129 1 16 SHEET 1 AA1 2 GLN A 10 PHE A 11 0 SHEET 2 AA1 2 TRP B 1 VAL B 2 -1 O VAL B 2 N GLN A 10 SHEET 1 AA2 3 GLU A 41 ALA A 45 0 SHEET 2 AA2 3 VAL A 34 VAL A 38 -1 N ILE A 36 O PHE A 43 SHEET 3 AA2 3 VAL A 71 ASN A 73 1 O ILE A 72 N VAL A 37 SITE 1 AC1 17 ASP A 17 ASN A 21 ARG A 24 LEU A 25 SITE 2 AC1 17 MET A 51 ALA A 52 CYS A 53 GLY A 55 SITE 3 AC1 17 TYR A 58 GLN A 113 MET A 114 GLU A 115 SITE 4 AC1 17 HIS A 116 HOH A 341 HOH A 353 HOH A 361 SITE 5 AC1 17 HOH A 363 SITE 1 AC2 6 PHE A 11 ARG A 13 HIS A 14 ASP A 17 SITE 2 AC2 6 HIS A 116 HOH A 341 SITE 1 AC3 2 HOH A 377 ALA B 5 SITE 1 AC4 2 GLU A 99 SER A 128 SITE 1 AC5 4 ASP A 63 GLN A 64 ARG A 98 GLU A 99 SITE 1 AC6 5 VAL A 37 SER A 39 ARG A 40 LEU A 74 SITE 2 AC6 5 HOH A 317 SITE 1 AC7 1 HOH A 328 SITE 1 AC8 1 SER A 70 SITE 1 AC9 4 ILE A 72 ASN A 73 TRP B 1 VAL B 2 CRYST1 68.490 68.490 167.476 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014601 0.008430 0.000000 0.00000 SCALE2 0.000000 0.016859 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005971 0.00000