HEADER OXIDOREDUCTASE 18-MAY-21 7OL1 TITLE THE X-RAY STRUCTURE OF L-THREONINE DEHYDROGENASE FROM THE COMMON TITLE 2 HOSPITAL PATHOGEN CLOSTRIDIUM DIFFICILE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-THREONINE 3-DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: L-THREONINE DEHYDROGENASE,UDP-GLUCOSE 4-EPIMERASE, COMPND 5 UNCHARACTERIZED EPIMERASE/DEHYDRATASE SAV0553; COMPND 6 EC: 1.1.1.103; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: THE N-TERMINAL SEQUENCE MGHHHHHHHHHHSSGHIEGRH COMPND 9 ORIGINATES FROM THE EXPRESSION TAG. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIOIDES DIFFICILE; SOURCE 3 ORGANISM_COMMON: PEPTOCLOSTRIDIUM DIFFICILE; SOURCE 4 ORGANISM_TAXID: 1496; SOURCE 5 GENE: CDGR_08060, NCTC13307_02322, SAMEA1402406_00083, SOURCE 6 SAMEA3375037_00176; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS DEHYDROGENASE, APOENZYME., OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.GUO,J.B.COOPER REVDAT 3 31-JAN-24 7OL1 1 REMARK REVDAT 2 06-OCT-21 7OL1 1 JRNL REMARK REVDAT 1 16-JUN-21 7OL1 0 JRNL AUTH E.ADJOGATSE,J.BENNETT,J.GUO,P.T.ERSKINE,S.P.WOOD,B.W.WREN, JRNL AUTH 2 J.B.COOPER JRNL TITL THE X-RAY STRUCTURE OF L-THREONINE DEHYDROGENASE FROM THE JRNL TITL 2 COMMON HOSPITAL PATHOGEN CLOSTRIDIUM DIFFICILE. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 77 269 2021 JRNL REFN ESSN 2053-230X JRNL PMID 34341193 JRNL DOI 10.1107/S2053230X21007135 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 47443 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2500 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2989 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.3670 REMARK 3 BIN FREE R VALUE SET COUNT : 156 REMARK 3 BIN FREE R VALUE : 0.3690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5030 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 112 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 75.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.95000 REMARK 3 B22 (A**2) : -2.95000 REMARK 3 B33 (A**2) : 9.56000 REMARK 3 B12 (A**2) : -1.47000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.234 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.210 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.198 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.429 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5134 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4875 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6938 ; 1.790 ; 1.643 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11296 ; 1.297 ; 1.583 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 636 ; 8.637 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 248 ;37.911 ;23.629 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 928 ;20.797 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;23.026 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 682 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5746 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1107 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7OL1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1292115932. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53475 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.560 REMARK 200 RESOLUTION RANGE LOW (A) : 63.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : 0.11800 REMARK 200 R SYM (I) : 0.11800 REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 8.30 REMARK 200 R MERGE FOR SHELL (I) : 1.77800 REMARK 200 R SYM FOR SHELL (I) : 1.77800 REMARK 200 FOR SHELL : 0.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5LC1 REMARK 200 REMARK 200 REMARK: MULTIFACETED. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 78.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5 MICROLITRES OF ENZYME AT A REMARK 280 CONCENTRATION OF 5 MG/ML AND 5 MICROLITRES OF 0.2 M LITHIUM REMARK 280 SULPHATE, 0.1 M TRIS-HCL PH 8.5, 30 % V/V PEG 4000 (MOLECULAR REMARK 280 DIMENSIONS LIMITED STRUCTURE SCREEN I, CONDITION 35)., VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.45000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 58.90000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 58.90000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 29.45000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 SER A -8 REMARK 465 SER A -7 REMARK 465 GLY A -6 REMARK 465 HIS A -5 REMARK 465 ILE A -4 REMARK 465 GLU A -3 REMARK 465 GLY A -2 REMARK 465 LYS A 318 REMARK 465 MET B -20 REMARK 465 GLY B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 SER B -8 REMARK 465 SER B -7 REMARK 465 GLY B -6 REMARK 465 HIS B -5 REMARK 465 ILE B -4 REMARK 465 GLU B -3 REMARK 465 GLY B -2 REMARK 465 LYS B 318 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 125 O LEU A 135 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 84 CD GLU B 84 OE2 0.085 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 59 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 2 -61.94 -109.91 REMARK 500 GLU A 39 -81.80 0.14 REMARK 500 SER A 46 -43.45 -179.84 REMARK 500 SER A 80 -70.59 -38.50 REMARK 500 SER A 116 -164.42 -119.63 REMARK 500 THR A 134 -167.19 -172.17 REMARK 500 LYS A 196 -63.50 -97.81 REMARK 500 ASN A 197 -139.14 -91.57 REMARK 500 ARG A 236 -59.86 -141.46 REMARK 500 LYS A 257 -8.78 -54.67 REMARK 500 VAL A 268 87.54 -151.37 REMARK 500 PRO A 280 154.39 -38.72 REMARK 500 TRP A 292 12.88 -152.35 REMARK 500 LYS B 2 -73.11 -91.13 REMARK 500 SER B 46 -9.69 -142.30 REMARK 500 ASP B 68 79.17 33.40 REMARK 500 SER B 77 155.67 179.26 REMARK 500 ASP B 109 55.54 33.56 REMARK 500 ASN B 124 -26.37 -28.65 REMARK 500 PRO B 170 -179.88 -60.72 REMARK 500 PRO B 179 -153.07 -96.14 REMARK 500 LYS B 196 -88.52 -78.97 REMARK 500 ASN B 197 -151.59 -84.29 REMARK 500 ALA B 228 151.74 -39.62 REMARK 500 ARG B 236 -64.40 -135.53 REMARK 500 GLU B 249 -68.26 -5.83 REMARK 500 ALA B 252 -60.25 -25.03 REMARK 500 TRP B 292 30.90 -154.03 REMARK 500 SER B 297 -4.65 -161.25 REMARK 500 LYS B 305 -71.00 -55.95 REMARK 500 ILE B 316 -41.60 -136.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 453 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A 454 DISTANCE = 7.16 ANGSTROMS REMARK 525 HOH A 455 DISTANCE = 8.41 ANGSTROMS REMARK 525 HOH A 456 DISTANCE = 8.75 ANGSTROMS REMARK 525 HOH B 450 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH B 451 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH B 452 DISTANCE = 6.70 ANGSTROMS REMARK 525 HOH B 453 DISTANCE = 6.79 ANGSTROMS REMARK 525 HOH B 454 DISTANCE = 8.84 ANGSTROMS REMARK 525 HOH B 455 DISTANCE = 9.29 ANGSTROMS REMARK 525 HOH B 456 DISTANCE = 12.54 ANGSTROMS DBREF1 7OL1 A 1 318 UNP A0A346VYB9_CLODI DBREF2 7OL1 A A0A346VYB9 1 318 DBREF1 7OL1 B 1 318 UNP A0A346VYB9_CLODI DBREF2 7OL1 B A0A346VYB9 1 318 SEQADV 7OL1 MET A -20 UNP A0A346VYB INITIATING METHIONINE SEQADV 7OL1 GLY A -19 UNP A0A346VYB EXPRESSION TAG SEQADV 7OL1 HIS A -18 UNP A0A346VYB EXPRESSION TAG SEQADV 7OL1 HIS A -17 UNP A0A346VYB EXPRESSION TAG SEQADV 7OL1 HIS A -16 UNP A0A346VYB EXPRESSION TAG SEQADV 7OL1 HIS A -15 UNP A0A346VYB EXPRESSION TAG SEQADV 7OL1 HIS A -14 UNP A0A346VYB EXPRESSION TAG SEQADV 7OL1 HIS A -13 UNP A0A346VYB EXPRESSION TAG SEQADV 7OL1 HIS A -12 UNP A0A346VYB EXPRESSION TAG SEQADV 7OL1 HIS A -11 UNP A0A346VYB EXPRESSION TAG SEQADV 7OL1 HIS A -10 UNP A0A346VYB EXPRESSION TAG SEQADV 7OL1 HIS A -9 UNP A0A346VYB EXPRESSION TAG SEQADV 7OL1 SER A -8 UNP A0A346VYB EXPRESSION TAG SEQADV 7OL1 SER A -7 UNP A0A346VYB EXPRESSION TAG SEQADV 7OL1 GLY A -6 UNP A0A346VYB EXPRESSION TAG SEQADV 7OL1 HIS A -5 UNP A0A346VYB EXPRESSION TAG SEQADV 7OL1 ILE A -4 UNP A0A346VYB EXPRESSION TAG SEQADV 7OL1 GLU A -3 UNP A0A346VYB EXPRESSION TAG SEQADV 7OL1 GLY A -2 UNP A0A346VYB EXPRESSION TAG SEQADV 7OL1 ARG A -1 UNP A0A346VYB EXPRESSION TAG SEQADV 7OL1 HIS A 0 UNP A0A346VYB EXPRESSION TAG SEQADV 7OL1 MET B -20 UNP A0A346VYB INITIATING METHIONINE SEQADV 7OL1 GLY B -19 UNP A0A346VYB EXPRESSION TAG SEQADV 7OL1 HIS B -18 UNP A0A346VYB EXPRESSION TAG SEQADV 7OL1 HIS B -17 UNP A0A346VYB EXPRESSION TAG SEQADV 7OL1 HIS B -16 UNP A0A346VYB EXPRESSION TAG SEQADV 7OL1 HIS B -15 UNP A0A346VYB EXPRESSION TAG SEQADV 7OL1 HIS B -14 UNP A0A346VYB EXPRESSION TAG SEQADV 7OL1 HIS B -13 UNP A0A346VYB EXPRESSION TAG SEQADV 7OL1 HIS B -12 UNP A0A346VYB EXPRESSION TAG SEQADV 7OL1 HIS B -11 UNP A0A346VYB EXPRESSION TAG SEQADV 7OL1 HIS B -10 UNP A0A346VYB EXPRESSION TAG SEQADV 7OL1 HIS B -9 UNP A0A346VYB EXPRESSION TAG SEQADV 7OL1 SER B -8 UNP A0A346VYB EXPRESSION TAG SEQADV 7OL1 SER B -7 UNP A0A346VYB EXPRESSION TAG SEQADV 7OL1 GLY B -6 UNP A0A346VYB EXPRESSION TAG SEQADV 7OL1 HIS B -5 UNP A0A346VYB EXPRESSION TAG SEQADV 7OL1 ILE B -4 UNP A0A346VYB EXPRESSION TAG SEQADV 7OL1 GLU B -3 UNP A0A346VYB EXPRESSION TAG SEQADV 7OL1 GLY B -2 UNP A0A346VYB EXPRESSION TAG SEQADV 7OL1 ARG B -1 UNP A0A346VYB EXPRESSION TAG SEQADV 7OL1 HIS B 0 UNP A0A346VYB EXPRESSION TAG SEQRES 1 A 339 MET GLY HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS SER SEQRES 2 A 339 SER GLY HIS ILE GLU GLY ARG HIS MET LYS LYS ILE LEU SEQRES 3 A 339 ILE THR GLY ALA LEU GLY GLN ILE GLY SER GLU LEU THR SEQRES 4 A 339 ILE LYS LEU ARG ASN GLU TYR GLY GLU GLN ASN VAL ILE SEQRES 5 A 339 ALA SER SER ARG ARG VAL LYS GLU GLY ASN PRO VAL CYS SEQRES 6 A 339 GLU SER GLY ILE PHE GLU ILE LEU ASP VAL THR ASP LYS SEQRES 7 A 339 ASN ARG PHE PHE GLU ILE ALA LYS LYS TYR ASP VAL ASP SEQRES 8 A 339 THR ILE ILE HIS LEU ALA SER LEU LEU SER ALA VAL ALA SEQRES 9 A 339 GLU SER LYS PRO LEU GLU ALA TRP ASN LEU ASN MET ASN SEQRES 10 A 339 GLY LEU ILE ASN GLY LEU GLU ILE ALA LYS GLU LEU ASP SEQRES 11 A 339 CYS LYS PHE PHE THR PRO SER SER ILE ALA ALA PHE GLY SEQRES 12 A 339 GLU ASN SER PRO LYS ASN MET THR PRO GLN ASP THR LEU SEQRES 13 A 339 GLN ARG PRO ASN THR MET TYR GLY VAL THR LYS VAL SER SEQRES 14 A 339 GLY GLU LEU LEU CYS ASP TYR TYR HIS SER LYS PHE GLY SEQRES 15 A 339 VAL ASP THR ARG GLY VAL ARG PHE PRO GLY LEU ILE SER SEQRES 16 A 339 TYR VAL THR PRO PRO GLY GLY GLY THR THR ASP TYR ALA SEQRES 17 A 339 VAL ASP ILE TYR TYR GLU ALA LEU LYS ASN LYS ARG TYR SEQRES 18 A 339 LYS SER TYR ILE ALA GLU GLY THR LYS MET ASP MET MET SEQRES 19 A 339 TYR MET PRO ASP ALA LEU GLN SER ILE VAL ASP LEU ILE SEQRES 20 A 339 GLU ALA PRO ALA ASP LYS LEU ILE HIS ARG ASN ALA PHE SEQRES 21 A 339 ASN ILE THR ALA MET SER PHE SER PRO GLU GLU ILE ALA SEQRES 22 A 339 ASP SER ILE LYS LYS TYR ILE PRO ASP PHE VAL ILE GLU SEQRES 23 A 339 TYR ASP VAL ASP PRO VAL ARG GLN SER ILE ALA ASP SER SEQRES 24 A 339 TRP PRO ASN SER LEU ASP SER SER SER ALA VAL LYS GLU SEQRES 25 A 339 TRP ASN PHE LYS PHE SER TYR ASP LEU ASP LYS MET THR SEQRES 26 A 339 LYS ASP MET LEU GLU LYS LEU SER GLU LYS GLY ILE GLY SEQRES 27 A 339 LYS SEQRES 1 B 339 MET GLY HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS SER SEQRES 2 B 339 SER GLY HIS ILE GLU GLY ARG HIS MET LYS LYS ILE LEU SEQRES 3 B 339 ILE THR GLY ALA LEU GLY GLN ILE GLY SER GLU LEU THR SEQRES 4 B 339 ILE LYS LEU ARG ASN GLU TYR GLY GLU GLN ASN VAL ILE SEQRES 5 B 339 ALA SER SER ARG ARG VAL LYS GLU GLY ASN PRO VAL CYS SEQRES 6 B 339 GLU SER GLY ILE PHE GLU ILE LEU ASP VAL THR ASP LYS SEQRES 7 B 339 ASN ARG PHE PHE GLU ILE ALA LYS LYS TYR ASP VAL ASP SEQRES 8 B 339 THR ILE ILE HIS LEU ALA SER LEU LEU SER ALA VAL ALA SEQRES 9 B 339 GLU SER LYS PRO LEU GLU ALA TRP ASN LEU ASN MET ASN SEQRES 10 B 339 GLY LEU ILE ASN GLY LEU GLU ILE ALA LYS GLU LEU ASP SEQRES 11 B 339 CYS LYS PHE PHE THR PRO SER SER ILE ALA ALA PHE GLY SEQRES 12 B 339 GLU ASN SER PRO LYS ASN MET THR PRO GLN ASP THR LEU SEQRES 13 B 339 GLN ARG PRO ASN THR MET TYR GLY VAL THR LYS VAL SER SEQRES 14 B 339 GLY GLU LEU LEU CYS ASP TYR TYR HIS SER LYS PHE GLY SEQRES 15 B 339 VAL ASP THR ARG GLY VAL ARG PHE PRO GLY LEU ILE SER SEQRES 16 B 339 TYR VAL THR PRO PRO GLY GLY GLY THR THR ASP TYR ALA SEQRES 17 B 339 VAL ASP ILE TYR TYR GLU ALA LEU LYS ASN LYS ARG TYR SEQRES 18 B 339 LYS SER TYR ILE ALA GLU GLY THR LYS MET ASP MET MET SEQRES 19 B 339 TYR MET PRO ASP ALA LEU GLN SER ILE VAL ASP LEU ILE SEQRES 20 B 339 GLU ALA PRO ALA ASP LYS LEU ILE HIS ARG ASN ALA PHE SEQRES 21 B 339 ASN ILE THR ALA MET SER PHE SER PRO GLU GLU ILE ALA SEQRES 22 B 339 ASP SER ILE LYS LYS TYR ILE PRO ASP PHE VAL ILE GLU SEQRES 23 B 339 TYR ASP VAL ASP PRO VAL ARG GLN SER ILE ALA ASP SER SEQRES 24 B 339 TRP PRO ASN SER LEU ASP SER SER SER ALA VAL LYS GLU SEQRES 25 B 339 TRP ASN PHE LYS PHE SER TYR ASP LEU ASP LYS MET THR SEQRES 26 B 339 LYS ASP MET LEU GLU LYS LEU SER GLU LYS GLY ILE GLY SEQRES 27 B 339 LYS FORMUL 3 HOH *112(H2 O) HELIX 1 AA1 GLY A 11 GLY A 26 1 16 HELIX 2 AA2 ASP A 56 TYR A 67 1 12 HELIX 3 AA3 LEU A 79 LYS A 86 1 8 HELIX 4 AA4 LYS A 86 ASP A 109 1 24 HELIX 5 AA5 ALA A 119 PHE A 121 5 3 HELIX 6 AA6 THR A 140 GLY A 161 1 22 HELIX 7 AA7 ASP A 185 ASN A 197 1 13 HELIX 8 AA8 MET A 215 ALA A 228 1 14 HELIX 9 AA9 PRO A 229 LEU A 233 5 5 HELIX 10 AB1 SER A 247 LYS A 257 1 11 HELIX 11 AB2 ASP A 269 TRP A 279 1 11 HELIX 12 AB3 SER A 285 ASN A 293 1 9 HELIX 13 AB4 ASP A 299 LYS A 314 1 16 HELIX 14 AB5 GLY B 11 GLY B 26 1 16 HELIX 15 AB6 ASN B 41 SER B 46 5 6 HELIX 16 AB7 ASP B 56 TYR B 67 1 12 HELIX 17 AB8 LEU B 79 LYS B 86 1 8 HELIX 18 AB9 LYS B 86 LEU B 108 1 23 HELIX 19 AC1 ALA B 119 PHE B 121 5 3 HELIX 20 AC2 THR B 140 GLY B 161 1 22 HELIX 21 AC3 GLY B 182 THR B 184 5 3 HELIX 22 AC4 ASP B 185 ASN B 197 1 13 HELIX 23 AC5 TYR B 214 ALA B 228 1 15 HELIX 24 AC6 PRO B 229 LEU B 233 5 5 HELIX 25 AC7 SER B 247 LYS B 257 1 11 HELIX 26 AC8 ASP B 269 SER B 278 1 10 HELIX 27 AC9 SER B 285 ASN B 293 1 9 HELIX 28 AD1 ASP B 299 LYS B 314 1 16 SHEET 1 AA1 6 ILE A 48 ILE A 51 0 SHEET 2 AA1 6 VAL A 30 SER A 34 1 N ALA A 32 O ILE A 48 SHEET 3 AA1 6 ILE A 4 THR A 7 1 N ILE A 4 O ILE A 31 SHEET 4 AA1 6 THR A 71 HIS A 74 1 O THR A 71 N LEU A 5 SHEET 5 AA1 6 LYS A 111 PHE A 113 1 O LYS A 111 N ILE A 72 SHEET 6 AA1 6 ASP A 163 ARG A 165 1 O ASP A 163 N PHE A 112 SHEET 1 AA2 3 SER A 116 SER A 117 0 SHEET 2 AA2 3 VAL A 167 PHE A 169 1 O VAL A 167 N SER A 116 SHEET 3 AA2 3 PHE A 239 ASN A 240 1 O PHE A 239 N ARG A 168 SHEET 1 AA3 3 GLY A 171 ILE A 173 0 SHEET 2 AA3 3 ASP A 211 TYR A 214 1 O MET A 213 N ILE A 173 SHEET 3 AA3 3 MET A 244 SER A 245 -1 O MET A 244 N MET A 212 SHEET 1 AA4 2 ARG A 199 SER A 202 0 SHEET 2 AA4 2 VAL A 263 TYR A 266 1 O GLU A 265 N TYR A 200 SHEET 1 AA5 6 ILE B 48 ILE B 51 0 SHEET 2 AA5 6 VAL B 30 SER B 34 1 N ALA B 32 O GLU B 50 SHEET 3 AA5 6 ILE B 4 THR B 7 1 N ILE B 6 O ILE B 31 SHEET 4 AA5 6 THR B 71 HIS B 74 1 O THR B 71 N LEU B 5 SHEET 5 AA5 6 LYS B 111 PHE B 113 1 O LYS B 111 N ILE B 72 SHEET 6 AA5 6 ASP B 163 ARG B 165 1 O ARG B 165 N PHE B 112 SHEET 1 AA6 3 SER B 116 SER B 117 0 SHEET 2 AA6 3 VAL B 167 PHE B 169 1 O VAL B 167 N SER B 116 SHEET 3 AA6 3 PHE B 239 ASN B 240 1 O PHE B 239 N ARG B 168 SHEET 1 AA7 2 ARG B 199 SER B 202 0 SHEET 2 AA7 2 VAL B 263 TYR B 266 1 O GLU B 265 N SER B 202 SHEET 1 AA8 2 MET B 210 MET B 212 0 SHEET 2 AA8 2 MET B 244 PHE B 246 -1 O MET B 244 N MET B 212 CISPEP 1 ASN A 237 ALA A 238 0 -3.98 CISPEP 2 ASN B 237 ALA B 238 0 -11.95 CRYST1 180.870 180.870 88.350 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005529 0.003192 0.000000 0.00000 SCALE2 0.000000 0.006384 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011319 0.00000