HEADER HYDROLASE 20-MAY-21 7OLI TITLE CRYSTAL STRUCTURE OF PAB-AGOG IN COMPLEX WITH 8-OXOGUANOSINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-GLYCOSYLASE/DNA LYASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 8-OXOGUANINE DNA GLYCOSYLASE,AGOG,DNA-(APURINIC OR COMPND 5 APYRIMIDINIC SITE) LYASE,AP LYASE; COMPND 6 EC: 3.2.2.-,4.2.99.18; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS ABYSSI (STRAIN GE5 / ORSAY); SOURCE 3 ORGANISM_TAXID: 272844; SOURCE 4 GENE: PYRAB10170, PAB1695; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS 8-OXOGUANINE DNA GLYCOSYLASE, ARCHAEA, PYROCOCCUS ABYSSI, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR F.COSTE,S.GOFFINONT,D.FLAMENT,B.CASTAING REVDAT 3 31-JAN-24 7OLI 1 REMARK REVDAT 2 11-JAN-23 7OLI 1 JRNL REVDAT 1 01-JUN-22 7OLI 0 JRNL AUTH C.FRANCK,G.STEPHANE,C.JULIEN,G.VIRGINIE,G.MARTINE,G.NORBERT, JRNL AUTH 2 C.FABRICE,F.DIDIER,S.M.JOSEF,C.BERTRAND JRNL TITL STRUCTURAL AND FUNCTIONAL DETERMINANTS OF THE ARCHAEAL JRNL TITL 2 8-OXOGUANINE-DNA GLYCOSYLASE AGOG FOR DNA DAMAGE RECOGNITION JRNL TITL 3 AND PROCESSING. JRNL REF NUCLEIC ACIDS RES. V. 50 11072 2022 JRNL REFN ESSN 1362-4962 JRNL PMID 36300625 JRNL DOI 10.1093/NAR/GKAC932 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 65723 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 3279 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.8300 - 4.6900 0.99 2848 145 0.1458 0.1589 REMARK 3 2 4.6900 - 3.7200 0.99 2749 155 0.1368 0.1527 REMARK 3 3 3.7200 - 3.2500 0.98 2734 126 0.1597 0.1871 REMARK 3 4 3.2500 - 2.9600 0.98 2679 144 0.1662 0.1893 REMARK 3 5 2.9600 - 2.7400 0.98 2718 149 0.1691 0.1924 REMARK 3 6 2.7400 - 2.5800 0.98 2691 137 0.1654 0.2053 REMARK 3 7 2.5800 - 2.4500 0.99 2740 136 0.1625 0.2060 REMARK 3 8 2.4500 - 2.3500 0.99 2721 121 0.1689 0.1923 REMARK 3 9 2.3500 - 2.2600 0.99 2683 147 0.1640 0.2042 REMARK 3 10 2.2600 - 2.1800 0.99 2678 152 0.1673 0.2072 REMARK 3 11 2.1800 - 2.1100 0.99 2726 139 0.1670 0.1890 REMARK 3 12 2.1100 - 2.0500 0.99 2672 147 0.1675 0.2211 REMARK 3 13 2.0500 - 2.0000 0.99 2747 130 0.1694 0.1961 REMARK 3 14 2.0000 - 1.9500 1.00 2724 151 0.1653 0.2093 REMARK 3 15 1.9500 - 1.9000 1.00 2675 135 0.1723 0.2343 REMARK 3 16 1.9000 - 1.8600 1.00 2766 131 0.1799 0.2274 REMARK 3 17 1.8600 - 1.8200 1.00 2652 149 0.1832 0.2314 REMARK 3 18 1.8200 - 1.7900 1.00 2733 150 0.1834 0.2177 REMARK 3 19 1.7900 - 1.7600 0.99 2730 148 0.1839 0.2411 REMARK 3 20 1.7600 - 1.7300 0.99 2676 145 0.1872 0.2017 REMARK 3 21 1.7300 - 1.7000 0.99 2675 146 0.1896 0.2385 REMARK 3 22 1.7000 - 1.6700 0.99 2727 150 0.1981 0.2579 REMARK 3 23 1.6700 - 1.6500 0.99 2700 146 0.2130 0.2614 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -2 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.8029 9.4271 5.9734 REMARK 3 T TENSOR REMARK 3 T11: 0.3932 T22: 0.2290 REMARK 3 T33: 0.3451 T12: 0.0186 REMARK 3 T13: -0.1416 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: 7.4373 L22: 5.5944 REMARK 3 L33: 5.8189 L12: 3.3267 REMARK 3 L13: 1.0195 L23: 2.5155 REMARK 3 S TENSOR REMARK 3 S11: 0.0986 S12: 0.1500 S13: -0.6141 REMARK 3 S21: -0.5078 S22: 0.1356 S23: 0.3683 REMARK 3 S31: 0.8480 S32: -0.2576 S33: -0.2243 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 21 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.0381 30.4444 14.2923 REMARK 3 T TENSOR REMARK 3 T11: 0.1377 T22: 0.1366 REMARK 3 T33: 0.1760 T12: 0.0112 REMARK 3 T13: 0.0170 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 3.7766 L22: 4.5887 REMARK 3 L33: 4.6231 L12: -0.4499 REMARK 3 L13: 0.9971 L23: -0.0342 REMARK 3 S TENSOR REMARK 3 S11: -0.0546 S12: 0.1093 S13: 0.2844 REMARK 3 S21: 0.0101 S22: 0.1074 S23: -0.2746 REMARK 3 S31: -0.1653 S32: 0.1698 S33: -0.0569 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 70 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.3312 40.6818 21.7889 REMARK 3 T TENSOR REMARK 3 T11: 0.4030 T22: 0.2482 REMARK 3 T33: 0.4030 T12: 0.0104 REMARK 3 T13: -0.0857 T23: -0.0918 REMARK 3 L TENSOR REMARK 3 L11: 5.1412 L22: 6.3998 REMARK 3 L33: 6.5415 L12: -1.1979 REMARK 3 L13: -0.8448 L23: 1.1633 REMARK 3 S TENSOR REMARK 3 S11: -0.2437 S12: -0.6018 S13: 0.8232 REMARK 3 S21: 0.6809 S22: 0.0738 S23: -0.4873 REMARK 3 S31: -0.9946 S32: 0.2470 S33: 0.0290 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 88 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.7154 36.1189 23.4040 REMARK 3 T TENSOR REMARK 3 T11: 0.3325 T22: 0.2639 REMARK 3 T33: 0.2310 T12: 0.0683 REMARK 3 T13: 0.0452 T23: -0.0627 REMARK 3 L TENSOR REMARK 3 L11: 2.9957 L22: 3.4555 REMARK 3 L33: 3.6822 L12: -1.2556 REMARK 3 L13: 0.9285 L23: 0.0953 REMARK 3 S TENSOR REMARK 3 S11: -0.0387 S12: -0.4572 S13: 0.2701 REMARK 3 S21: 0.3518 S22: 0.2661 S23: 0.2131 REMARK 3 S31: -0.2541 S32: -0.2976 S33: -0.1417 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 112 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.9148 20.0017 28.6378 REMARK 3 T TENSOR REMARK 3 T11: 0.2923 T22: 0.4245 REMARK 3 T33: 0.1538 T12: 0.0618 REMARK 3 T13: 0.0273 T23: 0.0872 REMARK 3 L TENSOR REMARK 3 L11: 3.9353 L22: 3.3996 REMARK 3 L33: 1.7159 L12: -0.2692 REMARK 3 L13: -2.1472 L23: 1.2256 REMARK 3 S TENSOR REMARK 3 S11: -0.0012 S12: -0.3695 S13: -0.2573 REMARK 3 S21: 0.6470 S22: 0.1263 S23: 0.0553 REMARK 3 S31: -0.0332 S32: -0.3315 S33: -0.0830 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 142 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.8902 18.3753 18.4893 REMARK 3 T TENSOR REMARK 3 T11: 0.1515 T22: 0.1912 REMARK 3 T33: 0.1519 T12: 0.0089 REMARK 3 T13: -0.0142 T23: 0.0392 REMARK 3 L TENSOR REMARK 3 L11: 4.1827 L22: 4.1344 REMARK 3 L33: 3.3147 L12: 0.0458 REMARK 3 L13: 1.5356 L23: -0.0940 REMARK 3 S TENSOR REMARK 3 S11: 0.0566 S12: -0.2643 S13: -0.3413 REMARK 3 S21: 0.1381 S22: 0.1807 S23: 0.2222 REMARK 3 S31: 0.1073 S32: -0.2235 S33: -0.2213 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 175 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.0350 18.5572 7.1821 REMARK 3 T TENSOR REMARK 3 T11: 0.2585 T22: 0.4180 REMARK 3 T33: 0.5990 T12: -0.0529 REMARK 3 T13: -0.2212 T23: 0.1899 REMARK 3 L TENSOR REMARK 3 L11: 7.8097 L22: 1.9426 REMARK 3 L33: 1.5594 L12: 3.4786 REMARK 3 L13: 1.3352 L23: 1.2925 REMARK 3 S TENSOR REMARK 3 S11: 0.3986 S12: 0.2071 S13: -0.3073 REMARK 3 S21: -0.1604 S22: 0.4721 S23: 0.8498 REMARK 3 S31: 0.3060 S32: -0.5649 S33: -0.2431 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 189 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.1027 13.3840 11.2475 REMARK 3 T TENSOR REMARK 3 T11: 0.2265 T22: 0.2465 REMARK 3 T33: 0.3365 T12: -0.0180 REMARK 3 T13: -0.1035 T23: 0.0579 REMARK 3 L TENSOR REMARK 3 L11: 5.2417 L22: 6.8143 REMARK 3 L33: 2.1123 L12: 2.2368 REMARK 3 L13: 1.6155 L23: -0.6106 REMARK 3 S TENSOR REMARK 3 S11: 0.3163 S12: -0.2820 S13: -0.6176 REMARK 3 S21: -0.0195 S22: 0.2118 S23: 0.5220 REMARK 3 S31: 0.4534 S32: -0.3558 S33: -0.4770 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 216 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.7845 13.2277 -3.1152 REMARK 3 T TENSOR REMARK 3 T11: 0.5401 T22: 0.3506 REMARK 3 T33: 0.2393 T12: -0.0289 REMARK 3 T13: -0.0543 T23: -0.0582 REMARK 3 L TENSOR REMARK 3 L11: 8.3673 L22: 8.1470 REMARK 3 L33: 3.3567 L12: -0.3184 REMARK 3 L13: -0.0811 L23: 0.1742 REMARK 3 S TENSOR REMARK 3 S11: 0.1558 S12: 0.8582 S13: -0.5612 REMARK 3 S21: -0.3961 S22: 0.2089 S23: 0.2281 REMARK 3 S31: 0.7742 S32: -0.1861 S33: -0.3765 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -2 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.0064 24.2990 36.5341 REMARK 3 T TENSOR REMARK 3 T11: 0.1955 T22: 0.1470 REMARK 3 T33: 0.1688 T12: 0.0051 REMARK 3 T13: -0.0399 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 1.5127 L22: 5.0658 REMARK 3 L33: 1.7293 L12: 0.2911 REMARK 3 L13: 0.3664 L23: 0.3762 REMARK 3 S TENSOR REMARK 3 S11: 0.0278 S12: -0.0815 S13: 0.1933 REMARK 3 S21: 0.3934 S22: -0.0795 S23: -0.1300 REMARK 3 S31: -0.0928 S32: 0.0859 S33: 0.0197 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 37 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.4027 10.4571 28.1520 REMARK 3 T TENSOR REMARK 3 T11: 0.1837 T22: 0.1323 REMARK 3 T33: 0.1623 T12: -0.0081 REMARK 3 T13: -0.0413 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 3.8914 L22: 3.0704 REMARK 3 L33: 3.3789 L12: -0.4339 REMARK 3 L13: 0.3187 L23: -0.0186 REMARK 3 S TENSOR REMARK 3 S11: 0.1090 S12: 0.0530 S13: -0.2265 REMARK 3 S21: -0.0951 S22: -0.0384 S23: 0.1923 REMARK 3 S31: 0.3199 S32: -0.1261 S33: -0.0304 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 88 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2480 14.1351 22.1390 REMARK 3 T TENSOR REMARK 3 T11: 0.1697 T22: 0.1364 REMARK 3 T33: 0.1747 T12: 0.0326 REMARK 3 T13: -0.0500 T23: -0.0073 REMARK 3 L TENSOR REMARK 3 L11: 6.8503 L22: 2.0530 REMARK 3 L33: 1.4697 L12: -0.0593 REMARK 3 L13: 0.6359 L23: 0.1893 REMARK 3 S TENSOR REMARK 3 S11: 0.0938 S12: 0.2969 S13: -0.1109 REMARK 3 S21: -0.1420 S22: -0.0794 S23: 0.1508 REMARK 3 S31: -0.0364 S32: -0.4818 S33: -0.0297 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 112 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.7027 28.9764 26.8115 REMARK 3 T TENSOR REMARK 3 T11: 0.2112 T22: 0.1484 REMARK 3 T33: 0.2493 T12: 0.0218 REMARK 3 T13: -0.0440 T23: 0.0302 REMARK 3 L TENSOR REMARK 3 L11: 1.6046 L22: 1.5295 REMARK 3 L33: 2.2520 L12: 0.4380 REMARK 3 L13: 0.7020 L23: 0.5381 REMARK 3 S TENSOR REMARK 3 S11: -0.1336 S12: 0.1345 S13: 0.4921 REMARK 3 S21: -0.1381 S22: -0.1090 S23: 0.0876 REMARK 3 S31: -0.3717 S32: -0.0541 S33: 0.1040 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 216 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.4772 31.0272 47.7764 REMARK 3 T TENSOR REMARK 3 T11: 0.3072 T22: 0.2598 REMARK 3 T33: 0.2329 T12: -0.0231 REMARK 3 T13: -0.0214 T23: -0.0169 REMARK 3 L TENSOR REMARK 3 L11: 6.5700 L22: 4.8210 REMARK 3 L33: 5.2198 L12: 2.7680 REMARK 3 L13: 2.4103 L23: 1.5889 REMARK 3 S TENSOR REMARK 3 S11: 0.0590 S12: -0.4515 S13: 0.1824 REMARK 3 S21: 0.3519 S22: -0.1614 S23: 0.0378 REMARK 3 S31: 0.1006 S32: -0.4545 S33: 0.0830 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7OLI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1292115965. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65858 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 48.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.40400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7OLB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LICL, TRI-NA CITRATE, PEG 6000, PH REMARK 280 4.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 65.53150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.60100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 65.53150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.60100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 4 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 75 CE NZ REMARK 470 ARG A 89 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 93 NE CZ NH1 NH2 REMARK 470 ARG A 103 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 179 NZ REMARK 470 LYS A 183 CE NZ REMARK 470 LYS A 188 CD CE NZ REMARK 470 LYS A 191 CG CD CE NZ REMARK 470 LYS A 195 CD CE NZ REMARK 470 ARG A 198 NE CZ NH1 NH2 REMARK 470 GLU A 199 CG CD OE1 OE2 REMARK 470 GLU A 226 CG CD OE1 OE2 REMARK 470 HIS B 0 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 4 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 75 CG CD CE NZ REMARK 470 ARG B 89 CD NE CZ NH1 NH2 REMARK 470 ARG B 103 CD NE CZ NH1 NH2 REMARK 470 LYS B 139 CE NZ REMARK 470 LYS B 179 CE NZ REMARK 470 LYS B 183 CD CE NZ REMARK 470 LYS B 188 CD CE NZ REMARK 470 ARG B 190 CD NE CZ NH1 NH2 REMARK 470 LYS B 191 CG CD CE NZ REMARK 470 ARG B 239 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 498 O HOH A 522 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 75 -96.41 -111.39 REMARK 500 ASP A 123 66.48 -150.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8HG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8HG B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7OLB RELATED DB: PDB REMARK 900 7OLB CONTAINS THE APO PROTEIN DBREF 7OLI A 1 239 UNP Q9UZY0 AGOG_PYRAB 1 239 DBREF 7OLI B 1 239 UNP Q9UZY0 AGOG_PYRAB 1 239 SEQADV 7OLI GLY A -2 UNP Q9UZY0 EXPRESSION TAG SEQADV 7OLI SER A -1 UNP Q9UZY0 EXPRESSION TAG SEQADV 7OLI HIS A 0 UNP Q9UZY0 EXPRESSION TAG SEQADV 7OLI GLY B -2 UNP Q9UZY0 EXPRESSION TAG SEQADV 7OLI SER B -1 UNP Q9UZY0 EXPRESSION TAG SEQADV 7OLI HIS B 0 UNP Q9UZY0 EXPRESSION TAG SEQRES 1 A 242 GLY SER HIS MET ILE ALA ARG ILE ILE GLY GLU ILE GLY SEQRES 2 A 242 ILE GLU GLY ALA ARG PHE ILE GLU GLU ASN ILE ASP GLU SEQRES 3 A 242 GLN PHE LYS ALA LEU ARG TYR LEU SER LYS GLY ILE ASP SEQRES 4 A 242 SER GLU THR PHE VAL LYS LEU VAL ILE ALA ASN SER LEU SEQRES 5 A 242 VAL SER TYR GLN LEU THR GLY LYS GLY GLU GLN TRP TRP SEQRES 6 A 242 TRP GLU PHE ALA LYS TYR PHE TYR GLY ARG ASP VAL LYS SEQRES 7 A 242 SER ILE TYR LEU ALA TYR LYS GLU PHE LEU PRO ASN SER SEQRES 8 A 242 ARG PHE ASN ARG ARG LEU ILE PRO GLN LYS LEU SER ARG SEQRES 9 A 242 ILE ARG ARG VAL GLU THR PHE LEU SER THR LEU THR GLU SEQRES 10 A 242 GLU ARG ILE GLU GLU TYR TYR GLY ASP MET SER SER LEU SEQRES 11 A 242 TRP GLY SER ILE ALA ARG ALA LEU GLY VAL ASP LYS GLU SEQRES 12 A 242 SER LYS THR VAL VAL PHE SER VAL LYS MET PHE GLY TYR SEQRES 13 A 242 ALA ALA ARG ILE VAL LEU SER THR PHE ASN PRO TYR PRO SEQRES 14 A 242 MET GLU ILE PRO ILE PRO GLU ASP SER ARG ILE VAL LYS SEQRES 15 A 242 LEU THR LYS LYS LEU THR ASN GLU LYS PRO ARG LYS PHE SEQRES 16 A 242 TRP MET LYS ILE ALA ARG GLU SER GLY VAL PRO PRO LEU SEQRES 17 A 242 HIS ILE ASP SER ILE LEU TRP PRO LEU LEU GLY GLY ALA SEQRES 18 A 242 SER ILE ASP SER ALA PRO PRO GLU LEU ARG ASP LYS LEU SEQRES 19 A 242 ALA GLU LEU ILE LYS ILE ILE ARG SEQRES 1 B 242 GLY SER HIS MET ILE ALA ARG ILE ILE GLY GLU ILE GLY SEQRES 2 B 242 ILE GLU GLY ALA ARG PHE ILE GLU GLU ASN ILE ASP GLU SEQRES 3 B 242 GLN PHE LYS ALA LEU ARG TYR LEU SER LYS GLY ILE ASP SEQRES 4 B 242 SER GLU THR PHE VAL LYS LEU VAL ILE ALA ASN SER LEU SEQRES 5 B 242 VAL SER TYR GLN LEU THR GLY LYS GLY GLU GLN TRP TRP SEQRES 6 B 242 TRP GLU PHE ALA LYS TYR PHE TYR GLY ARG ASP VAL LYS SEQRES 7 B 242 SER ILE TYR LEU ALA TYR LYS GLU PHE LEU PRO ASN SER SEQRES 8 B 242 ARG PHE ASN ARG ARG LEU ILE PRO GLN LYS LEU SER ARG SEQRES 9 B 242 ILE ARG ARG VAL GLU THR PHE LEU SER THR LEU THR GLU SEQRES 10 B 242 GLU ARG ILE GLU GLU TYR TYR GLY ASP MET SER SER LEU SEQRES 11 B 242 TRP GLY SER ILE ALA ARG ALA LEU GLY VAL ASP LYS GLU SEQRES 12 B 242 SER LYS THR VAL VAL PHE SER VAL LYS MET PHE GLY TYR SEQRES 13 B 242 ALA ALA ARG ILE VAL LEU SER THR PHE ASN PRO TYR PRO SEQRES 14 B 242 MET GLU ILE PRO ILE PRO GLU ASP SER ARG ILE VAL LYS SEQRES 15 B 242 LEU THR LYS LYS LEU THR ASN GLU LYS PRO ARG LYS PHE SEQRES 16 B 242 TRP MET LYS ILE ALA ARG GLU SER GLY VAL PRO PRO LEU SEQRES 17 B 242 HIS ILE ASP SER ILE LEU TRP PRO LEU LEU GLY GLY ALA SEQRES 18 B 242 SER ILE ASP SER ALA PRO PRO GLU LEU ARG ASP LYS LEU SEQRES 19 B 242 ALA GLU LEU ILE LYS ILE ILE ARG HET 8HG A 301 20 HET EDO A 302 4 HET 8HG B 301 20 HET EDO B 302 4 HET EDO B 303 4 HET EDO B 304 4 HET EDO B 305 4 HETNAM 8HG 2'-DEOXY-8-OXOGUANOSINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 8HG 2(C10 H13 N5 O5) FORMUL 4 EDO 5(C2 H6 O2) FORMUL 10 HOH *336(H2 O) HELIX 1 AA1 GLY A -2 ILE A 21 1 24 HELIX 2 AA2 ASP A 22 LYS A 33 1 12 HELIX 3 AA3 ASP A 36 VAL A 50 1 15 HELIX 4 AA4 LYS A 57 TYR A 70 1 14 HELIX 5 AA5 SER A 76 LEU A 85 1 10 HELIX 6 AA6 PRO A 86 SER A 88 5 3 HELIX 7 AA7 LEU A 94 SER A 110 1 17 HELIX 8 AA8 THR A 113 GLY A 122 1 10 HELIX 9 AA9 ASP A 123 GLY A 136 1 14 HELIX 10 AB1 SER A 141 SER A 160 1 20 HELIX 11 AB2 ASP A 174 THR A 185 1 12 HELIX 12 AB3 LYS A 188 GLY A 201 1 14 HELIX 13 AB4 PRO A 203 GLY A 216 1 14 HELIX 14 AB5 PRO A 224 ARG A 239 1 16 HELIX 15 AB6 SER B -1 ILE B 21 1 23 HELIX 16 AB7 ASP B 22 LYS B 33 1 12 HELIX 17 AB8 ASP B 36 VAL B 50 1 15 HELIX 18 AB9 LYS B 57 TYR B 70 1 14 HELIX 19 AC1 SER B 76 LEU B 85 1 10 HELIX 20 AC2 PRO B 86 SER B 88 5 3 HELIX 21 AC3 LEU B 94 SER B 110 1 17 HELIX 22 AC4 THR B 113 GLY B 122 1 10 HELIX 23 AC5 ASP B 123 GLY B 136 1 14 HELIX 24 AC6 SER B 141 SER B 160 1 20 HELIX 25 AC7 ASP B 174 THR B 185 1 12 HELIX 26 AC8 LYS B 188 GLY B 201 1 14 HELIX 27 AC9 PRO B 203 GLY B 216 1 14 HELIX 28 AD1 PRO B 224 ARG B 239 1 16 SITE 1 AC1 14 GLN A 24 SER A 51 TYR A 52 TRP A 62 SITE 2 AC1 14 LYS A 142 PHE A 146 LYS A 149 PRO A 172 SITE 3 AC1 14 ASP A 174 ASP A 208 TRP A 212 HOH A 449 SITE 4 AC1 14 HOH A 465 HOH A 515 SITE 1 AC2 5 ARG A 15 GLU A 19 ARG A 156 SER A 160 SITE 2 AC2 5 THR A 161 SITE 1 AC3 12 GLN B 24 SER B 51 TYR B 52 TRP B 62 SITE 2 AC3 12 LYS B 142 PHE B 146 PRO B 172 ASP B 174 SITE 3 AC3 12 ASP B 208 TRP B 212 HOH B 435 HOH B 474 SITE 1 AC4 5 GLU B 19 ARG B 29 GLU B 233 LYS B 236 SITE 2 AC4 5 HOH B 404 SITE 1 AC5 7 ARG B 15 GLU B 19 ARG B 156 SER B 160 SITE 2 AC5 7 THR B 161 HOH B 445 HOH B 521 SITE 1 AC6 4 LYS B 57 GLY B 58 ARG B 176 HOH B 474 SITE 1 AC7 4 MET B 1 ARG B 4 ASN B 20 SER B 222 CRYST1 131.063 47.202 91.271 90.00 100.80 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007630 0.000000 0.001456 0.00000 SCALE2 0.000000 0.021186 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011154 0.00000