HEADER IMMUNE SYSTEM 21-MAY-21 7OM4 TITLE NANOBODY EGB4 BOUND TO THE FULL EXTRACELLULAR EGFR-EGF COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPIDERMAL GROWTH FACTOR RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROTO-ONCOGENE C-ERBB-1,RECEPTOR TYROSINE-PROTEIN KINASE COMPND 5 ERBB-1; COMPND 6 EC: 2.7.10.1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: EPIDERMAL GROWTH FACTOR; COMPND 10 CHAIN: C; COMPND 11 SYNONYM: UROGASTRONE; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: NANOBODY EGB4; COMPND 15 CHAIN: B; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EGFR, ERBB, ERBB1, HER1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: EGF; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 17 ORGANISM_TAXID: 9844; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS EGFR, NANOBODY, CANCER, SIGNALING, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.R.ZERONIAN,B.J.C.JANSSEN REVDAT 3 31-JAN-24 7OM4 1 REMARK REVDAT 2 23-MAR-22 7OM4 1 JRNL REMARK REVDAT 1 02-MAR-22 7OM4 0 JRNL AUTH M.R.ZERONIAN,S.DOULKERIDOU,P.M.P.VAN BERGEN EN HENEGOUWEN, JRNL AUTH 2 B.J.C.JANSSEN JRNL TITL STRUCTURAL INSIGHTS INTO THE NON-INHIBITORY MECHANISM OF THE JRNL TITL 2 ANTI-EGFR EGB4 NANOBODY. JRNL REF BMC MOL CELL BIOL V. 23 12 2022 JRNL REFN ESSN 2661-8850 JRNL PMID 35232398 JRNL DOI 10.1186/S12860-022-00412-X REMARK 2 REMARK 2 RESOLUTION. 6.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.1_4122 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 6.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 153.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 65.3 REMARK 3 NUMBER OF REFLECTIONS : 6312 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.297 REMARK 3 R VALUE (WORKING SET) : 0.296 REMARK 3 FREE R VALUE : 0.327 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.580 REMARK 3 FREE R VALUE TEST SET COUNT : 289 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1153.8100 - 7.6200 0.99 4679 230 0.2917 0.3222 REMARK 3 2 7.6200 - 6.0500 0.30 1344 59 0.3474 0.3872 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.970 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 37.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 534.9 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 701:703) REMARK 3 ORIGIN FOR THE GROUP (A): -0.8129-139.7992 8.9155 REMARK 3 T TENSOR REMARK 3 T11: 1.1598 T22: 3.8107 REMARK 3 T33: 3.7610 T12: 2.0389 REMARK 3 T13: -0.8563 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 8.5214 L22: 9.3187 REMARK 3 L33: 2.7908 L12: -1.7726 REMARK 3 L13: 2.4306 L23: -2.5426 REMARK 3 S TENSOR REMARK 3 S11: 1.9520 S12: 3.7151 S13: -2.5254 REMARK 3 S21: -4.6518 S22: -2.6030 S23: -0.6365 REMARK 3 S31: 1.9054 S32: 2.1426 S33: -0.5871 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESID 190:309 REMARK 3 ORIGIN FOR THE GROUP (A): 26.5878-155.9180 6.5412 REMARK 3 T TENSOR REMARK 3 T11: 4.5956 T22: 6.3750 REMARK 3 T33: 4.1556 T12: 0.1710 REMARK 3 T13: 1.8355 T23: 0.3173 REMARK 3 L TENSOR REMARK 3 L11: 4.6538 L22: 8.4444 REMARK 3 L33: 0.2846 L12: 5.3482 REMARK 3 L13: -0.2629 L23: -1.2044 REMARK 3 S TENSOR REMARK 3 S11: 0.3263 S12: 0.5257 S13: 3.4759 REMARK 3 S21: -0.1730 S22: 1.4032 S23: 4.9927 REMARK 3 S31: 1.3164 S32: 3.2837 S33: 0.4214 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 704:706) REMARK 3 ORIGIN FOR THE GROUP (A): 32.3034-120.6354 3.8855 REMARK 3 T TENSOR REMARK 3 T11: 2.2134 T22: 1.8572 REMARK 3 T33: 6.1796 T12: -1.8955 REMARK 3 T13: 0.0309 T23: 0.7932 REMARK 3 L TENSOR REMARK 3 L11: 2.4524 L22: 2.2792 REMARK 3 L33: 5.1227 L12: -3.2501 REMARK 3 L13: -2.8084 L23: 5.6484 REMARK 3 S TENSOR REMARK 3 S11: 0.8719 S12: 4.9432 S13: -0.4979 REMARK 3 S21: -7.6097 S22: -2.0336 S23: 0.3640 REMARK 3 S31: -1.9766 S32: 0.6929 S33: -3.7836 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 707) REMARK 3 ORIGIN FOR THE GROUP (A): 73.2898-121.4915 -6.0565 REMARK 3 T TENSOR REMARK 3 T11: 6.0130 T22: 3.6931 REMARK 3 T33: 6.9721 T12: -0.5681 REMARK 3 T13: 1.7744 T23: 0.6996 REMARK 3 L TENSOR REMARK 3 L11: 3.9990 L22: 0.5927 REMARK 3 L33: 6.1600 L12: 1.8010 REMARK 3 L13: 4.9841 L23: 1.9607 REMARK 3 S TENSOR REMARK 3 S11: 1.0142 S12: 4.4911 S13: -3.7477 REMARK 3 S21: -2.4360 S22: 0.6982 S23: -6.9727 REMARK 3 S31: 1.0087 S32: 3.7408 S33: 4.9066 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -13.5327-165.6944 29.8871 REMARK 3 T TENSOR REMARK 3 T11: -1.3443 T22: 2.2378 REMARK 3 T33: 4.8811 T12: 3.4348 REMARK 3 T13: 1.6893 T23: 0.4830 REMARK 3 L TENSOR REMARK 3 L11: 3.8046 L22: 1.5962 REMARK 3 L33: 5.0893 L12: -2.4861 REMARK 3 L13: -3.7829 L23: 1.8248 REMARK 3 S TENSOR REMARK 3 S11: 2.5961 S12: 1.8285 S13: 1.3974 REMARK 3 S21: -1.1206 S22: 1.4087 S23: -2.2924 REMARK 3 S31: -5.0255 S32: -0.0367 S33: 14.5801 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 9.7614-118.3786 12.0874 REMARK 3 T TENSOR REMARK 3 T11: 6.0473 T22: 4.3425 REMARK 3 T33: 8.2761 T12: 1.6807 REMARK 3 T13: -3.8164 T23: -1.4848 REMARK 3 L TENSOR REMARK 3 L11: 0.9986 L22: 1.9900 REMARK 3 L33: 8.3461 L12: 3.6250 REMARK 3 L13: 2.8222 L23: 2.0170 REMARK 3 S TENSOR REMARK 3 S11: -2.9760 S12: -3.2466 S13: 2.4581 REMARK 3 S21: 6.2130 S22: -2.8983 S23: 2.8309 REMARK 3 S31: -0.6836 S32: -0.9447 S33: -46.6844 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7OM4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1292115966. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JAN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS, AUTOPROC REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6321 REMARK 200 RESOLUTION RANGE HIGH (A) : 6.050 REMARK 200 RESOLUTION RANGE LOW (A) : 153.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.8 REMARK 200 DATA REDUNDANCY : 9.600 REMARK 200 R MERGE (I) : 0.18700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 6.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 7.15 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.99500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3NJP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 88.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 10.2 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M LISO4, 0.1 M GLYCINE PH 10.5, REMARK 280 1.1 M SODIUM DIHYDROGEN PHOSPHATE AND 0.72 M DIPOTASSIUM REMARK 280 HYDROGEN PHOSPHATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.04600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 90.09200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 67.56900 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 112.61500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 22.52300 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 45.04600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 90.09200 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 112.61500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 67.56900 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 22.52300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 153.80500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -266.39807 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 22.52300 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 615 REMARK 465 GLY A 616 REMARK 465 PRO A 617 REMARK 465 LYS A 618 REMARK 465 ILE A 619 REMARK 465 PRO A 620 REMARK 465 SER A 621 REMARK 465 ALA A 622 REMARK 465 ALA A 623 REMARK 465 ALA A 624 REMARK 465 HIS A 625 REMARK 465 HIS A 626 REMARK 465 HIS A 627 REMARK 465 HIS A 628 REMARK 465 HIS A 629 REMARK 465 HIS A 630 REMARK 465 ASN C 1 REMARK 465 SER C 2 REMARK 465 ASP C 3 REMARK 465 SER C 4 REMARK 465 LEU C 52 REMARK 465 ARG C 53 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 7 OG SER B 21 2.12 REMARK 500 OG1 THR A 605 O GLY A 611 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 13 -115.04 58.61 REMARK 500 ASN A 49 -116.63 63.18 REMARK 500 LEU A 77 55.79 -108.16 REMARK 500 SER A 92 -61.18 -133.60 REMARK 500 LEU A 111 73.65 -151.89 REMARK 500 ALA A 123 -168.94 -104.18 REMARK 500 ASN A 134 -58.14 74.12 REMARK 500 PRO A 171 96.20 -55.38 REMARK 500 CYS A 207 108.48 -49.14 REMARK 500 ALA A 213 -68.99 -107.03 REMARK 500 GLU A 233 -127.60 53.41 REMARK 500 LYS A 311 -176.94 72.47 REMARK 500 ASN A 314 108.33 -52.35 REMARK 500 SER A 326 133.78 -171.04 REMARK 500 PHE A 335 43.97 -147.04 REMARK 500 GLU A 400 -62.67 -97.70 REMARK 500 ASN A 449 53.36 -103.48 REMARK 500 GLN A 480 51.09 -104.96 REMARK 500 ASN A 504 -75.49 -114.49 REMARK 500 HIS A 560 -84.50 -117.83 REMARK 500 TYR A 602 33.69 -85.60 REMARK 500 VAL B 48 -62.14 -120.16 REMARK 500 ASP B 98 141.69 -171.03 REMARK 500 PRO B 129 154.46 -49.50 REMARK 500 REMARK 500 REMARK: NULL DBREF 7OM4 A 1 621 UNP P00533 EGFR_HUMAN 25 645 DBREF 7OM4 C 1 53 UNP P01133 EGF_HUMAN 971 1023 DBREF 7OM4 B 1 130 PDB 7OM4 7OM4 1 130 SEQADV 7OM4 ALA A 622 UNP P00533 EXPRESSION TAG SEQADV 7OM4 ALA A 623 UNP P00533 EXPRESSION TAG SEQADV 7OM4 ALA A 624 UNP P00533 EXPRESSION TAG SEQADV 7OM4 HIS A 625 UNP P00533 EXPRESSION TAG SEQADV 7OM4 HIS A 626 UNP P00533 EXPRESSION TAG SEQADV 7OM4 HIS A 627 UNP P00533 EXPRESSION TAG SEQADV 7OM4 HIS A 628 UNP P00533 EXPRESSION TAG SEQADV 7OM4 HIS A 629 UNP P00533 EXPRESSION TAG SEQADV 7OM4 HIS A 630 UNP P00533 EXPRESSION TAG SEQRES 1 A 630 LEU GLU GLU LYS LYS VAL CYS GLN GLY THR SER ASN LYS SEQRES 2 A 630 LEU THR GLN LEU GLY THR PHE GLU ASP HIS PHE LEU SER SEQRES 3 A 630 LEU GLN ARG MET PHE ASN ASN CYS GLU VAL VAL LEU GLY SEQRES 4 A 630 ASN LEU GLU ILE THR TYR VAL GLN ARG ASN TYR ASP LEU SEQRES 5 A 630 SER PHE LEU LYS THR ILE GLN GLU VAL ALA GLY TYR VAL SEQRES 6 A 630 LEU ILE ALA LEU ASN THR VAL GLU ARG ILE PRO LEU GLU SEQRES 7 A 630 ASN LEU GLN ILE ILE ARG GLY ASN MET TYR TYR GLU ASN SEQRES 8 A 630 SER TYR ALA LEU ALA VAL LEU SER ASN TYR ASP ALA ASN SEQRES 9 A 630 LYS THR GLY LEU LYS GLU LEU PRO MET ARG ASN LEU GLN SEQRES 10 A 630 GLU ILE LEU HIS GLY ALA VAL ARG PHE SER ASN ASN PRO SEQRES 11 A 630 ALA LEU CYS ASN VAL GLU SER ILE GLN TRP ARG ASP ILE SEQRES 12 A 630 VAL SER SER ASP PHE LEU SER ASN MET SER MET ASP PHE SEQRES 13 A 630 GLN ASN HIS LEU GLY SER CYS GLN LYS CYS ASP PRO SER SEQRES 14 A 630 CYS PRO ASN GLY SER CYS TRP GLY ALA GLY GLU GLU ASN SEQRES 15 A 630 CYS GLN LYS LEU THR LYS ILE ILE CYS ALA GLN GLN CYS SEQRES 16 A 630 SER GLY ARG CYS ARG GLY LYS SER PRO SER ASP CYS CYS SEQRES 17 A 630 HIS ASN GLN CYS ALA ALA GLY CYS THR GLY PRO ARG GLU SEQRES 18 A 630 SER ASP CYS LEU VAL CYS ARG LYS PHE ARG ASP GLU ALA SEQRES 19 A 630 THR CYS LYS ASP THR CYS PRO PRO LEU MET LEU TYR ASN SEQRES 20 A 630 PRO THR THR TYR GLN MET ASP VAL ASN PRO GLU GLY LYS SEQRES 21 A 630 TYR SER PHE GLY ALA THR CYS VAL LYS LYS CYS PRO ARG SEQRES 22 A 630 ASN TYR VAL VAL THR ASP HIS GLY SER CYS VAL ARG ALA SEQRES 23 A 630 CYS GLY ALA ASP SER TYR GLU MET GLU GLU ASP GLY VAL SEQRES 24 A 630 ARG LYS CYS LYS LYS CYS GLU GLY PRO CYS ARG LYS VAL SEQRES 25 A 630 CYS ASN GLY ILE GLY ILE GLY GLU PHE LYS ASP SER LEU SEQRES 26 A 630 SER ILE ASN ALA THR ASN ILE LYS HIS PHE LYS ASN CYS SEQRES 27 A 630 THR SER ILE SER GLY ASP LEU HIS ILE LEU PRO VAL ALA SEQRES 28 A 630 PHE ARG GLY ASP SER PHE THR HIS THR PRO PRO LEU ASP SEQRES 29 A 630 PRO GLN GLU LEU ASP ILE LEU LYS THR VAL LYS GLU ILE SEQRES 30 A 630 THR GLY PHE LEU LEU ILE GLN ALA TRP PRO GLU ASN ARG SEQRES 31 A 630 THR ASP LEU HIS ALA PHE GLU ASN LEU GLU ILE ILE ARG SEQRES 32 A 630 GLY ARG THR LYS GLN HIS GLY GLN PHE SER LEU ALA VAL SEQRES 33 A 630 VAL SER LEU ASN ILE THR SER LEU GLY LEU ARG SER LEU SEQRES 34 A 630 LYS GLU ILE SER ASP GLY ASP VAL ILE ILE SER GLY ASN SEQRES 35 A 630 LYS ASN LEU CYS TYR ALA ASN THR ILE ASN TRP LYS LYS SEQRES 36 A 630 LEU PHE GLY THR SER GLY GLN LYS THR LYS ILE ILE SER SEQRES 37 A 630 ASN ARG GLY GLU ASN SER CYS LYS ALA THR GLY GLN VAL SEQRES 38 A 630 CYS HIS ALA LEU CYS SER PRO GLU GLY CYS TRP GLY PRO SEQRES 39 A 630 GLU PRO ARG ASP CYS VAL SER CYS ARG ASN VAL SER ARG SEQRES 40 A 630 GLY ARG GLU CYS VAL ASP LYS CYS ASN LEU LEU GLU GLY SEQRES 41 A 630 GLU PRO ARG GLU PHE VAL GLU ASN SER GLU CYS ILE GLN SEQRES 42 A 630 CYS HIS PRO GLU CYS LEU PRO GLN ALA MET ASN ILE THR SEQRES 43 A 630 CYS THR GLY ARG GLY PRO ASP ASN CYS ILE GLN CYS ALA SEQRES 44 A 630 HIS TYR ILE ASP GLY PRO HIS CYS VAL LYS THR CYS PRO SEQRES 45 A 630 ALA GLY VAL MET GLY GLU ASN ASN THR LEU VAL TRP LYS SEQRES 46 A 630 TYR ALA ASP ALA GLY HIS VAL CYS HIS LEU CYS HIS PRO SEQRES 47 A 630 ASN CYS THR TYR GLY CYS THR GLY PRO GLY LEU GLU GLY SEQRES 48 A 630 CYS PRO THR ASN GLY PRO LYS ILE PRO SER ALA ALA ALA SEQRES 49 A 630 HIS HIS HIS HIS HIS HIS SEQRES 1 C 53 ASN SER ASP SER GLU CYS PRO LEU SER HIS ASP GLY TYR SEQRES 2 C 53 CYS LEU HIS ASP GLY VAL CYS MET TYR ILE GLU ALA LEU SEQRES 3 C 53 ASP LYS TYR ALA CYS ASN CYS VAL VAL GLY TYR ILE GLY SEQRES 4 C 53 GLU ARG CYS GLN TYR ARG ASP LEU LYS TRP TRP GLU LEU SEQRES 5 C 53 ARG SEQRES 1 B 130 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY SER VAL GLN SEQRES 2 B 130 ALA GLY GLY SER LEU LYS LEU SER CYS ALA ALA SER GLY SEQRES 3 B 130 ARG SER PHE SER THR TYR ALA MET GLY TRP PHE ARG GLN SEQRES 4 B 130 ALA PRO GLY GLN ASP ARG GLU PHE VAL ALA THR ILE SER SEQRES 5 B 130 TRP THR ASP SER THR ASP TYR ALA ASP SER VAL LYS GLY SEQRES 6 B 130 ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR GLY SEQRES 7 B 130 TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR ALA SEQRES 8 B 130 VAL TYR TYR CYS ALA ALA ASP ARG TRP ALA SER SER ARG SEQRES 9 B 130 ARG ASN VAL ASP TYR ASP TYR TRP GLY GLN GLY THR GLN SEQRES 10 B 130 VAL THR VAL SER SER HIS GLY SER GLY LEU VAL PRO ARG HET NAG A 701 14 HET NAG A 702 14 HET NAG A 703 14 HET NAG A 704 14 HET NAG A 705 14 HET NAG A 706 14 HET NAG A 707 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 NAG 7(C8 H15 N O6) HELIX 1 AA1 THR A 19 ASN A 32 1 14 HELIX 2 AA2 LEU A 52 ILE A 58 5 7 HELIX 3 AA3 TYR A 88 ASN A 91 5 4 HELIX 4 AA4 ASN A 134 ILE A 138 5 5 HELIX 5 AA5 GLN A 139 ILE A 143 5 5 HELIX 6 AA6 SER A 145 LEU A 149 5 5 HELIX 7 AA7 CYS A 170 SER A 174 5 5 HELIX 8 AA8 SER A 203 CYS A 207 5 5 HELIX 9 AA9 ARG A 220 CYS A 224 5 5 HELIX 10 AB1 ILE A 318 LYS A 322 5 5 HELIX 11 AB2 THR A 330 HIS A 334 5 5 HELIX 12 AB3 LEU A 348 GLY A 354 1 7 HELIX 13 AB4 ASP A 364 THR A 373 5 10 HELIX 14 AB5 LEU A 393 GLU A 397 5 5 HELIX 15 AB6 LYS A 407 GLY A 410 5 4 HELIX 16 AB7 TYR A 447 ILE A 451 5 5 HELIX 17 AB8 ASN A 452 PHE A 457 1 6 HELIX 18 AB9 GLY A 471 THR A 478 1 8 HELIX 19 AC1 GLU A 495 CYS A 499 5 5 HELIX 20 AC2 GLY A 551 CYS A 555 5 5 HELIX 21 AC3 GLY A 608 CYS A 612 5 5 HELIX 22 AC4 SER B 28 TYR B 32 5 5 HELIX 23 AC5 LYS B 86 THR B 90 5 5 HELIX 24 AC6 ARG B 105 TYR B 109 5 5 SHEET 1 AA1 5 VAL A 6 CYS A 7 0 SHEET 2 AA1 5 VAL A 36 VAL A 37 1 O VAL A 36 N CYS A 7 SHEET 3 AA1 5 GLU A 60 VAL A 61 1 O GLU A 60 N VAL A 37 SHEET 4 AA1 5 ILE A 82 ILE A 83 1 O ILE A 82 N VAL A 61 SHEET 5 AA1 5 GLU A 118 ILE A 119 1 O GLU A 118 N ILE A 83 SHEET 1 AA2 4 LEU A 41 THR A 44 0 SHEET 2 AA2 4 VAL A 65 ALA A 68 1 O LEU A 66 N LEU A 41 SHEET 3 AA2 4 TYR A 93 LEU A 98 1 O ALA A 96 N ILE A 67 SHEET 4 AA2 4 ALA A 123 SER A 127 1 O ALA A 123 N ALA A 94 SHEET 1 AA3 2 PHE A 230 ASP A 232 0 SHEET 2 AA3 2 THR A 235 LYS A 237 -1 O LYS A 237 N PHE A 230 SHEET 1 AA4 2 MET A 244 ASN A 247 0 SHEET 2 AA4 2 GLN A 252 VAL A 255 -1 O ASP A 254 N LEU A 245 SHEET 1 AA5 2 TYR A 261 PHE A 263 0 SHEET 2 AA5 2 THR A 266 VAL A 268 -1 O VAL A 268 N TYR A 261 SHEET 1 AA6 2 VAL A 276 VAL A 277 0 SHEET 2 AA6 2 CYS A 283 VAL A 284 -1 O VAL A 284 N VAL A 276 SHEET 1 AA7 2 MET A 294 GLU A 295 0 SHEET 2 AA7 2 ARG A 300 LYS A 301 -1 O LYS A 301 N MET A 294 SHEET 1 AA8 4 CYS A 313 ASN A 314 0 SHEET 2 AA8 4 SER A 340 SER A 342 1 O SER A 340 N CYS A 313 SHEET 3 AA8 4 GLU A 376 ILE A 377 1 O GLU A 376 N ILE A 341 SHEET 4 AA8 4 ILE A 401 ILE A 402 1 O ILE A 401 N ILE A 377 SHEET 1 AA9 5 LEU A 345 ILE A 347 0 SHEET 2 AA9 5 LEU A 381 ILE A 383 1 O LEU A 382 N LEU A 345 SHEET 3 AA9 5 PHE A 412 VAL A 416 1 O ALA A 415 N ILE A 383 SHEET 4 AA9 5 ASP A 436 ILE A 439 1 O ASP A 436 N SER A 413 SHEET 5 AA9 5 THR A 464 ILE A 466 1 O LYS A 465 N VAL A 437 SHEET 1 AB1 2 VAL A 505 ARG A 507 0 SHEET 2 AB1 2 GLU A 510 VAL A 512 -1 O VAL A 512 N VAL A 505 SHEET 1 AB2 2 GLU A 524 GLU A 527 0 SHEET 2 AB2 2 GLU A 530 GLN A 533 -1 O GLU A 530 N GLU A 527 SHEET 1 AB3 2 LYS A 585 TYR A 586 0 SHEET 2 AB3 2 HIS A 594 LEU A 595 -1 O HIS A 594 N TYR A 586 SHEET 1 AB4 2 CYS C 20 ILE C 23 0 SHEET 2 AB4 2 LYS C 28 CYS C 31 -1 O ALA C 30 N MET C 21 SHEET 1 AB5 2 TYR C 37 ILE C 38 0 SHEET 2 AB5 2 TYR C 44 ARG C 45 -1 O TYR C 44 N ILE C 38 SHEET 1 AB6 4 GLN B 3 SER B 7 0 SHEET 2 AB6 4 LEU B 18 SER B 25 -1 O SER B 21 N SER B 7 SHEET 3 AB6 4 THR B 77 MET B 82 -1 O MET B 82 N LEU B 18 SHEET 4 AB6 4 PHE B 67 ASP B 72 -1 N ASP B 72 O THR B 77 SHEET 1 AB7 6 SER B 11 VAL B 12 0 SHEET 2 AB7 6 THR B 116 VAL B 120 1 O THR B 119 N VAL B 12 SHEET 3 AB7 6 ALA B 91 ASP B 98 -1 N TYR B 93 O THR B 116 SHEET 4 AB7 6 ALA B 33 GLN B 39 -1 N ALA B 33 O ASP B 98 SHEET 5 AB7 6 GLU B 46 ILE B 51 -1 O GLU B 46 N ARG B 38 SHEET 6 AB7 6 THR B 57 TYR B 59 -1 O ASP B 58 N THR B 50 SHEET 1 AB8 4 SER B 11 VAL B 12 0 SHEET 2 AB8 4 THR B 116 VAL B 120 1 O THR B 119 N VAL B 12 SHEET 3 AB8 4 ALA B 91 ASP B 98 -1 N TYR B 93 O THR B 116 SHEET 4 AB8 4 TYR B 111 TRP B 112 -1 O TYR B 111 N ALA B 97 SSBOND 1 CYS A 7 CYS A 34 1555 1555 2.03 SSBOND 2 CYS A 133 CYS A 163 1555 1555 2.03 SSBOND 3 CYS A 166 CYS A 175 1555 1555 2.03 SSBOND 4 CYS A 170 CYS A 183 1555 1555 2.03 SSBOND 5 CYS A 191 CYS A 199 1555 1555 2.03 SSBOND 6 CYS A 195 CYS A 207 1555 1555 2.03 SSBOND 7 CYS A 208 CYS A 216 1555 1555 2.03 SSBOND 8 CYS A 212 CYS A 224 1555 1555 2.03 SSBOND 9 CYS A 227 CYS A 236 1555 1555 2.03 SSBOND 10 CYS A 240 CYS A 267 1555 1555 2.03 SSBOND 11 CYS A 271 CYS A 283 1555 1555 2.03 SSBOND 12 CYS A 287 CYS A 302 1555 1555 2.03 SSBOND 13 CYS A 305 CYS A 309 1555 1555 2.03 SSBOND 14 CYS A 313 CYS A 338 1555 1555 2.03 SSBOND 15 CYS A 446 CYS A 475 1555 1555 2.03 SSBOND 16 CYS A 482 CYS A 491 1555 1555 2.03 SSBOND 17 CYS A 486 CYS A 499 1555 1555 2.03 SSBOND 18 CYS A 502 CYS A 511 1555 1555 2.03 SSBOND 19 CYS A 515 CYS A 531 1555 1555 2.03 SSBOND 20 CYS A 534 CYS A 547 1555 1555 2.03 SSBOND 21 CYS A 538 CYS A 555 1555 1555 2.03 SSBOND 22 CYS A 558 CYS A 567 1555 1555 2.03 SSBOND 23 CYS A 571 CYS A 593 1555 1555 2.03 SSBOND 24 CYS A 596 CYS A 604 1555 1555 2.03 SSBOND 25 CYS A 600 CYS A 612 1555 1555 2.03 SSBOND 26 CYS C 6 CYS C 20 1555 1555 2.03 SSBOND 27 CYS C 14 CYS C 31 1555 1555 2.03 SSBOND 28 CYS C 33 CYS C 42 1555 1555 2.03 SSBOND 29 CYS B 22 CYS B 95 1555 1555 2.03 LINK ND2 ASN A 32 C1 NAG A 701 1555 1555 1.44 LINK ND2 ASN A 49 C1 NAG A 702 1555 1555 1.44 LINK ND2 ASN A 151 C1 NAG A 703 1555 1555 1.44 LINK ND2 ASN A 328 C1 NAG A 704 1555 1555 1.45 LINK ND2 ASN A 337 C1 NAG A 705 1555 1555 1.45 LINK ND2 ASN A 420 C1 NAG A 706 1555 1555 1.44 LINK ND2 ASN A 504 C1 NAG A 707 1555 1555 1.44 CRYST1 307.610 307.610 135.138 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.003251 0.001877 0.000000 0.00000 SCALE2 0.000000 0.003754 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007400 0.00000