HEADER IMMUNE SYSTEM 24-MAY-21 7OMT TITLE CRYSTAL STRUCTURE OF PROMACROBODY 21 WITH BOUND MALTOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROMACROBODY 21; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NANOBODY CRYO-EM CHAPERONE MBP, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.BOTTE,D.NI,S.SCHENCK,I.ZIMMERMANN,M.CHAMI,N.BOCQUET,P.EGLOFF, AUTHOR 2 D.BUCHER,M.TRABUCO,R.K.Y.CHENG,J.D.BRUNNER,M.A.SEEGER,H.STAHLBERG, AUTHOR 3 M.HENNIG REVDAT 3 31-JAN-24 7OMT 1 REMARK REVDAT 2 11-MAY-22 7OMT 1 JRNL REVDAT 1 04-MAY-22 7OMT 0 JRNL AUTH M.BOTTE,D.NI,S.SCHENCK,I.ZIMMERMANN,M.CHAMI,N.BOCQUET, JRNL AUTH 2 P.EGLOFF,D.BUCHER,M.TRABUCO,R.K.Y.CHENG,J.D.BRUNNER, JRNL AUTH 3 M.A.SEEGER,H.STAHLBERG,M.HENNIG JRNL TITL CRYO-EM STRUCTURES OF A LPTDE TRANSPORTER IN COMPLEX WITH JRNL TITL 2 PRO-MACROBODIES OFFER INSIGHT INTO LIPOPOLYSACCHARIDE JRNL TITL 3 TRANSLOCATION. JRNL REF NAT COMMUN V. 13 1826 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 35383177 JRNL DOI 10.1038/S41467-022-29459-2 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0257 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 34737 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.890 REMARK 3 FREE R VALUE TEST SET COUNT : 1700 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2689 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.3017 REMARK 3 BIN FREE R VALUE SET COUNT : 131 REMARK 3 BIN FREE R VALUE : 0.3392 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3757 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 153 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.84 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.240 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : NULL NULL NULL NULL REMARK 3 ORIGIN FOR THE GROUP (A): -41.2374 -30.4471 7.0880 REMARK 3 T TENSOR REMARK 3 T11: 0.3984 T22: 0.3737 REMARK 3 T33: 0.4115 T12: -0.0346 REMARK 3 T13: 0.1306 T23: 0.0402 REMARK 3 L TENSOR REMARK 3 L11: 4.4474 L22: 3.1287 REMARK 3 L33: 4.0603 L12: 1.9422 REMARK 3 L13: -1.6962 L23: -0.8235 REMARK 3 S TENSOR REMARK 3 S11: -0.3239 S12: 0.0529 S13: -0.5554 REMARK 3 S21: 0.1330 S22: 0.2093 S23: -0.0779 REMARK 3 S31: 0.6302 S32: -0.6176 S33: 0.0260 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : NULL NULL NULL NULL REMARK 3 ORIGIN FOR THE GROUP (A): -21.1491 10.6053 -17.6254 REMARK 3 T TENSOR REMARK 3 T11: 0.5380 T22: 0.4034 REMARK 3 T33: 0.3666 T12: -0.1175 REMARK 3 T13: 0.0014 T23: 0.0644 REMARK 3 L TENSOR REMARK 3 L11: 2.5011 L22: 3.4011 REMARK 3 L33: 2.0367 L12: 1.3075 REMARK 3 L13: -0.1470 L23: -1.1637 REMARK 3 S TENSOR REMARK 3 S11: -0.3830 S12: 0.3808 S13: 0.3596 REMARK 3 S21: -0.2126 S22: 0.3085 S23: -0.0897 REMARK 3 S31: -0.5211 S32: 0.0673 S33: 0.0418 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.11 REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7OMT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1292116062. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-SEP-19 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34750 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 44.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.16700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1N3W, 5FWO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: IN 0.2 M MGCL2, 0.1M HEPES PH 7.5, 30% REMARK 280 PEG400, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 16.59149 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.81200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 58.57484 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 16.59149 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 43.81200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 58.57484 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -51.89700 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 763 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 841 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 844 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 848 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 484 REMARK 465 GLY A 485 REMARK 465 SER A 486 REMARK 465 GLY A 487 REMARK 465 GLY A 488 REMARK 465 GLY A 489 REMARK 465 SER A 490 REMARK 465 ALA A 491 REMARK 465 TRP A 492 REMARK 465 SER A 493 REMARK 465 HIS A 494 REMARK 465 PRO A 495 REMARK 465 GLN A 496 REMARK 465 PHE A 497 REMARK 465 GLU A 498 REMARK 465 LYS A 499 REMARK 465 GLY A 500 REMARK 465 GLY A 501 REMARK 465 GLY A 502 REMARK 465 SER A 503 REMARK 465 GLY A 504 REMARK 465 GLY A 505 REMARK 465 GLY A 506 REMARK 465 SER A 507 REMARK 465 GLY A 508 REMARK 465 GLY A 509 REMARK 465 SER A 510 REMARK 465 ALA A 511 REMARK 465 TRP A 512 REMARK 465 SER A 513 REMARK 465 HIS A 514 REMARK 465 PRO A 515 REMARK 465 GLN A 516 REMARK 465 PHE A 517 REMARK 465 GLU A 518 REMARK 465 LYS A 519 REMARK 465 ALA A 520 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 172 O HOH A 701 2.03 REMARK 500 O HOH A 722 O HOH A 741 2.08 REMARK 500 OE1 GLU A 35 O HOH A 702 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 99 CA - CB - SG ANGL. DEV. = 6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 51 -50.39 -125.86 REMARK 500 ALA A 95 167.09 176.82 REMARK 500 ILE A 104 -164.88 -129.21 REMARK 500 ASP A 172 -164.12 172.70 REMARK 500 ALA A 285 -87.05 -81.64 REMARK 500 ASP A 326 -165.16 -119.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 P6G A 601 REMARK 610 P6G A 602 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 603 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 172 OD1 REMARK 620 2 ASP A 172 OD2 49.7 REMARK 620 3 HOH A 701 O 93.2 45.2 REMARK 620 4 HOH A 749 O 71.3 120.5 153.2 REMARK 620 5 HOH A 750 O 68.5 76.4 78.7 75.4 REMARK 620 6 HOH A 840 O 100.5 111.1 121.1 83.9 158.8 REMARK 620 7 HOH A 848 O 148.8 144.0 100.7 84.5 86.9 96.0 REMARK 620 8 HOH A 848 O 148.4 144.5 101.3 83.9 86.9 95.8 0.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7OMM RELATED DB: PDB REMARK 900 RELATED ID: EMD-12990 RELATED DB: EMDB DBREF 7OMT A 1 520 PDB 7OMT 7OMT 1 520 SEQRES 1 A 520 GLY PRO SER GLN VAL GLN LEU VAL GLU SER GLY GLY GLY SEQRES 2 A 520 LEU VAL GLN PRO GLY GLY SER LEU ARG LEU SER CYS ALA SEQRES 3 A 520 ALA SER GLY PHE PRO VAL LYS TYR GLU HIS MET TYR TRP SEQRES 4 A 520 TYR ARG GLN ALA PRO GLY LYS GLU ARG GLU TRP VAL ALA SEQRES 5 A 520 ALA ILE ASN SER ALA GLY ASN GLU THR HIS TYR ALA ASP SEQRES 6 A 520 SER VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASN ALA SEQRES 7 A 520 LYS ASN THR VAL TYR LEU GLN MET ASN SER LEU LYS PRO SEQRES 8 A 520 GLU ASP THR ALA VAL TYR TYR CYS ASN VAL LYS ASP ILE SEQRES 9 A 520 GLY TRP TRP ALA ALA TYR ASP TYR TRP GLY GLN GLY THR SEQRES 10 A 520 GLN VAL THR VAL PRO PRO LEU VAL ILE TRP ILE ASN GLY SEQRES 11 A 520 ASP LYS GLY TYR ASN GLY LEU ALA GLU VAL GLY LYS LYS SEQRES 12 A 520 PHE GLU LYS ASP THR GLY ILE LYS VAL THR VAL GLU HIS SEQRES 13 A 520 PRO ASP LYS LEU GLU GLU LYS PHE PRO GLN VAL ALA ALA SEQRES 14 A 520 THR GLY ASP GLY PRO ASP ILE ILE PHE TRP ALA HIS ASP SEQRES 15 A 520 ARG PHE GLY GLY TYR ALA GLN SER GLY LEU LEU ALA GLU SEQRES 16 A 520 ILE THR PRO ASP LYS ALA PHE GLN ASP LYS LEU TYR PRO SEQRES 17 A 520 PHE THR TRP ASP ALA VAL ARG TYR ASN GLY LYS LEU ILE SEQRES 18 A 520 ALA TYR PRO ILE ALA VAL GLU ALA LEU SER LEU ILE TYR SEQRES 19 A 520 ASN LYS ASP LEU LEU PRO ASN PRO PRO LYS THR TRP GLU SEQRES 20 A 520 GLU ILE PRO ALA LEU ASP LYS GLU LEU LYS ALA LYS GLY SEQRES 21 A 520 LYS SER ALA LEU MET PHE ASN LEU GLN GLU PRO TYR PHE SEQRES 22 A 520 THR TRP PRO LEU ILE ALA ALA ASP GLY GLY TYR ALA PHE SEQRES 23 A 520 LYS TYR GLU ASN GLY LYS TYR ASP ILE LYS ASP VAL GLY SEQRES 24 A 520 VAL ASP ASN ALA GLY ALA LYS ALA GLY LEU THR PHE LEU SEQRES 25 A 520 VAL ASP LEU ILE LYS ASN LYS HIS MET ASN ALA ASP THR SEQRES 26 A 520 ASP TYR SER ILE ALA GLU ALA ALA PHE ASN LYS GLY GLU SEQRES 27 A 520 THR ALA MET THR ILE ASN GLY PRO TRP ALA TRP SER ASN SEQRES 28 A 520 ILE ASP THR SER LYS VAL ASN TYR GLY VAL THR VAL LEU SEQRES 29 A 520 PRO THR PHE LYS GLY GLN PRO SER LYS PRO PHE VAL GLY SEQRES 30 A 520 VAL LEU SER ALA GLY ILE ASN ALA ALA SER PRO ASN LYS SEQRES 31 A 520 GLU LEU ALA LYS GLU PHE LEU GLU ASN TYR LEU LEU THR SEQRES 32 A 520 ASP GLU GLY LEU GLU ALA VAL ASN LYS ASP LYS PRO LEU SEQRES 33 A 520 GLY ALA VAL ALA LEU LYS SER TYR GLU GLU GLU LEU ALA SEQRES 34 A 520 LYS ASP PRO ARG ILE ALA ALA THR MET GLU ASN ALA GLN SEQRES 35 A 520 LYS GLY GLU ILE MET PRO ASN ILE PRO GLN MET SER ALA SEQRES 36 A 520 PHE TRP TYR ALA VAL ARG THR ALA VAL ILE ASN ALA ALA SEQRES 37 A 520 SER GLY ARG GLN THR VAL ASP GLU ALA LEU LYS ASP ALA SEQRES 38 A 520 GLN THR PRO GLY SER GLY GLY GLY SER ALA TRP SER HIS SEQRES 39 A 520 PRO GLN PHE GLU LYS GLY GLY GLY SER GLY GLY GLY SER SEQRES 40 A 520 GLY GLY SER ALA TRP SER HIS PRO GLN PHE GLU LYS ALA HET GLC B 1 12 HET GLC B 2 11 HET P6G A 601 13 HET P6G A 602 11 HET MG A 603 1 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM P6G HEXAETHYLENE GLYCOL HETNAM MG MAGNESIUM ION HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN P6G POLYETHYLENE GLYCOL PEG400 FORMUL 2 GLC 2(C6 H12 O6) FORMUL 3 P6G 2(C12 H26 O7) FORMUL 5 MG MG 2+ FORMUL 6 HOH *153(H2 O) HELIX 1 AA1 PRO A 31 GLU A 35 5 5 HELIX 2 AA2 LYS A 90 THR A 94 5 5 HELIX 3 AA3 GLY A 105 ALA A 109 5 5 HELIX 4 AA4 GLY A 133 GLY A 149 1 17 HELIX 5 AA5 LYS A 159 ALA A 169 1 11 HELIX 6 AA6 ARG A 183 SER A 190 1 8 HELIX 7 AA7 ASP A 199 ASP A 204 1 6 HELIX 8 AA8 TYR A 207 VAL A 214 1 8 HELIX 9 AA9 THR A 245 GLU A 247 5 3 HELIX 10 AB1 GLU A 248 ALA A 258 1 11 HELIX 11 AB2 GLU A 270 ASP A 281 1 12 HELIX 12 AB3 ASN A 302 ASN A 318 1 17 HELIX 13 AB4 ASP A 326 LYS A 336 1 11 HELIX 14 AB5 GLY A 345 TRP A 347 5 3 HELIX 15 AB6 ALA A 348 LYS A 356 1 9 HELIX 16 AB7 ASN A 389 TYR A 400 1 12 HELIX 17 AB8 THR A 403 LYS A 412 1 10 HELIX 18 AB9 LEU A 421 LYS A 430 1 10 HELIX 19 AC1 ASP A 431 GLY A 444 1 14 HELIX 20 AC2 GLN A 452 GLY A 470 1 19 HELIX 21 AC3 THR A 473 THR A 483 1 11 SHEET 1 AA1 4 GLN A 6 SER A 10 0 SHEET 2 AA1 4 LEU A 21 SER A 28 -1 O ALA A 26 N VAL A 8 SHEET 3 AA1 4 THR A 81 MET A 86 -1 O LEU A 84 N LEU A 23 SHEET 4 AA1 4 PHE A 71 ASP A 76 -1 N THR A 72 O GLN A 85 SHEET 1 AA2 6 GLY A 13 LEU A 14 0 SHEET 2 AA2 6 THR A 117 THR A 120 1 O THR A 120 N GLY A 13 SHEET 3 AA2 6 ALA A 95 ILE A 104 -1 N TYR A 97 O THR A 117 SHEET 4 AA2 6 MET A 37 GLN A 42 -1 N TYR A 40 O TYR A 98 SHEET 5 AA2 6 GLU A 49 ILE A 54 -1 O GLU A 49 N ARG A 41 SHEET 6 AA2 6 THR A 61 TYR A 63 -1 O HIS A 62 N ALA A 53 SHEET 1 AA3 4 GLY A 13 LEU A 14 0 SHEET 2 AA3 4 THR A 117 THR A 120 1 O THR A 120 N GLY A 13 SHEET 3 AA3 4 ALA A 95 ILE A 104 -1 N TYR A 97 O THR A 117 SHEET 4 AA3 4 TYR A 110 TRP A 113 -1 O TYR A 110 N ILE A 104 SHEET 1 AA4 6 VAL A 152 GLU A 155 0 SHEET 2 AA4 6 LEU A 124 TRP A 127 1 N ILE A 126 O GLU A 155 SHEET 3 AA4 6 ILE A 176 ALA A 180 1 O PHE A 178 N TRP A 127 SHEET 4 AA4 6 PHE A 375 ILE A 383 -1 O SER A 380 N TRP A 179 SHEET 5 AA4 6 TYR A 223 GLU A 228 -1 N GLU A 228 O GLY A 377 SHEET 6 AA4 6 ALA A 418 VAL A 419 -1 O ALA A 418 N VAL A 227 SHEET 1 AA5 5 VAL A 152 GLU A 155 0 SHEET 2 AA5 5 LEU A 124 TRP A 127 1 N ILE A 126 O GLU A 155 SHEET 3 AA5 5 ILE A 176 ALA A 180 1 O PHE A 178 N TRP A 127 SHEET 4 AA5 5 PHE A 375 ILE A 383 -1 O SER A 380 N TRP A 179 SHEET 5 AA5 5 GLU A 445 ILE A 446 1 O GLU A 445 N VAL A 376 SHEET 1 AA6 2 ARG A 215 TYR A 216 0 SHEET 2 AA6 2 LYS A 219 LEU A 220 -1 O LYS A 219 N TYR A 216 SHEET 1 AA7 4 SER A 262 LEU A 264 0 SHEET 2 AA7 4 THR A 339 ASN A 344 1 O ALA A 340 N SER A 262 SHEET 3 AA7 4 SER A 231 ASN A 235 -1 N ILE A 233 O THR A 342 SHEET 4 AA7 4 TYR A 359 THR A 362 -1 O THR A 362 N LEU A 232 SHEET 1 AA8 2 PHE A 286 GLU A 289 0 SHEET 2 AA8 2 LYS A 292 VAL A 298 -1 O ASP A 294 N LYS A 287 SHEET 1 AA9 2 THR A 366 PHE A 367 0 SHEET 2 AA9 2 GLN A 370 PRO A 371 -1 O GLN A 370 N PHE A 367 SSBOND 1 CYS A 25 CYS A 99 1555 1555 2.04 LINK O4 GLC B 1 C1 GLC B 2 1555 1555 1.41 LINK OD1 ASP A 172 MG MG A 603 1555 1555 2.07 LINK OD2 ASP A 172 MG MG A 603 1555 1555 2.87 LINK MG MG A 603 O HOH A 701 1555 1555 2.03 LINK MG MG A 603 O HOH A 749 1555 1555 2.53 LINK MG MG A 603 O HOH A 750 1555 1555 2.66 LINK MG MG A 603 O HOH A 840 1555 1555 2.39 LINK MG MG A 603 O HOH A 848 1555 1555 2.03 LINK MG MG A 603 O HOH A 848 1555 2455 2.06 CRYST1 51.897 87.624 118.635 90.00 99.08 90.00 I 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019269 0.000000 0.003078 0.00000 SCALE2 0.000000 0.011412 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008536 0.00000