HEADER PROTEIN BINDING 25-MAY-21 7ONN TITLE CRYSTAL STRUCTURE OF PBP3 TRANSPEPTIDASE DOMAIN FROM E. COLI IN TITLE 2 COMPLEX WITH AIC499 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDOGLYCAN D,D-TRANSPEPTIDASE FTSI; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ESSENTIAL CELL DIVISION PROTEIN FTSI,MUREIN TRANSPEPTIDASE, COMPND 5 PENICILLIN-BINDING PROTEIN 3,PBP-3,PEPTIDOGLYCAN SYNTHASE FTSI, COMPND 6 ESSENTIAL CELL DIVISION PROTEIN FTSI,MUREIN TRANSPEPTIDASE, COMPND 7 PENICILLIN-BINDING PROTEIN 3,PBP-3,PEPTIDOGLYCAN SYNTHASE FTSI, COMPND 8 ESSENTIAL CELL DIVISION PROTEIN FTSI,MUREIN TRANSPEPTIDASE, COMPND 9 PENICILLIN-BINDING PROTEIN 3,PBP-3,PEPTIDOGLYCAN SYNTHASE FTSI; COMPND 10 EC: 3.4.16.4; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: FTSI, PBPB, B0084, JW0082; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS MONOBACTAM, PBP3, PEPTIDOGLYCAN SYNTHESIS, DRUG COMPLEX, KEYWDS 2 TRANSPEPTIDASE DOMAIN, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR S.FREISCHEM,I.GRIMM,O.H.WEIERGRAEBER REVDAT 3 31-JAN-24 7ONN 1 REMARK REVDAT 2 22-SEP-21 7ONN 1 JRNL REVDAT 1 04-AUG-21 7ONN 0 JRNL AUTH S.FREISCHEM,I.GRIMM,A.LOPEZ-PEREZ,D.WILLBOLD,B.KLENKE, JRNL AUTH 2 C.VUONG,A.J.DINGLEY,O.H.WEIERGRABER JRNL TITL INTERACTION MODE OF THE NOVEL MONOBACTAM AIC499 TARGETING JRNL TITL 2 PENICILLIN BINDING PROTEIN 3 OF GRAM-NEGATIVE BACTERIA. JRNL REF BIOMOLECULES V. 11 2021 JRNL REFN ESSN 2218-273X JRNL PMID 34356681 JRNL DOI 10.3390/BIOM11071057 REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.1 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 45.5 REMARK 3 NUMBER OF REFLECTIONS : 18128 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.160 REMARK 3 FREE R VALUE TEST SET COUNT : 935 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.8000 - 3.6700 1.00 5735 288 0.1768 0.2157 REMARK 3 2 3.6700 - 2.9100 1.00 5416 300 0.2554 0.3093 REMARK 3 3 2.9100 - 2.5400 0.60 3221 199 0.3226 0.3536 REMARK 3 4 2.5400 - 2.3100 0.30 1617 88 0.3486 0.3951 REMARK 3 5 2.3100 - 2.1400 0.13 669 34 0.4597 0.5185 REMARK 3 6 2.1400 - 2.0200 0.08 440 22 0.3950 0.5122 REMARK 3 7 2.0200 - 1.9200 0.02 95 4 0.4395 0.4653 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 37.060 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 70:179 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.881 37.335 -19.148 REMARK 3 T TENSOR REMARK 3 T11: 0.4963 T22: 0.6699 REMARK 3 T33: 0.5756 T12: -0.0941 REMARK 3 T13: -0.2244 T23: 0.4778 REMARK 3 L TENSOR REMARK 3 L11: 0.0562 L22: 2.4578 REMARK 3 L33: 1.2859 L12: 0.1388 REMARK 3 L13: -0.2478 L23: 0.0462 REMARK 3 S TENSOR REMARK 3 S11: 0.0328 S12: 0.1018 S13: -0.0227 REMARK 3 S21: -0.3619 S22: 0.1339 S23: 0.4233 REMARK 3 S31: -0.0949 S32: -0.4452 S33: -0.1699 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 180:237 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.458 36.895 -10.871 REMARK 3 T TENSOR REMARK 3 T11: 0.5747 T22: 0.8138 REMARK 3 T33: 0.6942 T12: -0.0546 REMARK 3 T13: -0.2053 T23: 0.5027 REMARK 3 L TENSOR REMARK 3 L11: 1.1514 L22: 2.1134 REMARK 3 L33: 1.6396 L12: -0.1464 REMARK 3 L13: -0.1808 L23: -0.7771 REMARK 3 S TENSOR REMARK 3 S11: -0.0789 S12: -0.0856 S13: -0.1448 REMARK 3 S21: -0.2149 S22: 0.3923 S23: 0.7630 REMARK 3 S31: 0.0378 S32: -0.7443 S33: -0.3504 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 238:288 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.916 27.788 -13.962 REMARK 3 T TENSOR REMARK 3 T11: 0.5516 T22: 0.3034 REMARK 3 T33: 0.3561 T12: -0.0399 REMARK 3 T13: -0.2846 T23: 0.2691 REMARK 3 L TENSOR REMARK 3 L11: 0.7960 L22: 0.9899 REMARK 3 L33: 0.8713 L12: -0.4813 REMARK 3 L13: 0.5734 L23: -0.5226 REMARK 3 S TENSOR REMARK 3 S11: 0.2159 S12: 0.0711 S13: -0.2382 REMARK 3 S21: -0.2357 S22: 0.0953 S23: 0.2117 REMARK 3 S31: 0.3430 S32: -0.2724 S33: -0.1909 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 289:319 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.077 22.262 0.715 REMARK 3 T TENSOR REMARK 3 T11: 0.5333 T22: 0.4001 REMARK 3 T33: 0.3672 T12: 0.0263 REMARK 3 T13: -0.1994 T23: 0.2261 REMARK 3 L TENSOR REMARK 3 L11: 0.8605 L22: 1.7327 REMARK 3 L33: 1.3205 L12: -0.8092 REMARK 3 L13: 0.0148 L23: -1.1467 REMARK 3 S TENSOR REMARK 3 S11: 0.1223 S12: 0.0109 S13: -0.2347 REMARK 3 S21: -0.2329 S22: 0.1692 S23: 0.2794 REMARK 3 S31: 0.5490 S32: -0.1759 S33: -0.2326 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 320:341 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.567 16.752 15.215 REMARK 3 T TENSOR REMARK 3 T11: 0.8460 T22: 0.7400 REMARK 3 T33: 0.7922 T12: 0.3441 REMARK 3 T13: -0.1271 T23: 0.2357 REMARK 3 L TENSOR REMARK 3 L11: 3.3415 L22: 1.3818 REMARK 3 L33: 2.2914 L12: -0.6702 REMARK 3 L13: 0.3917 L23: 0.1872 REMARK 3 S TENSOR REMARK 3 S11: -0.1041 S12: -0.3609 S13: -0.3030 REMARK 3 S21: 0.2532 S22: 0.2205 S23: -0.3566 REMARK 3 S31: 0.8182 S32: 0.2970 S33: -0.1166 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN A AND RESID 342:382 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.670 19.590 11.132 REMARK 3 T TENSOR REMARK 3 T11: 0.5818 T22: 0.5434 REMARK 3 T33: 0.5000 T12: 0.2860 REMARK 3 T13: -0.2277 T23: 0.2242 REMARK 3 L TENSOR REMARK 3 L11: 0.3740 L22: 0.6098 REMARK 3 L33: 0.4736 L12: 0.0843 REMARK 3 L13: 0.2396 L23: -0.3803 REMARK 3 S TENSOR REMARK 3 S11: 0.1095 S12: -0.0247 S13: -0.2529 REMARK 3 S21: -0.0483 S22: -0.0809 S23: -0.1847 REMARK 3 S31: 0.2642 S32: 0.2504 S33: 0.0247 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN A AND RESID 383:436 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.497 22.543 8.575 REMARK 3 T TENSOR REMARK 3 T11: 0.5927 T22: 0.4809 REMARK 3 T33: 0.4229 T12: -0.0331 REMARK 3 T13: -0.2449 T23: 0.4812 REMARK 3 L TENSOR REMARK 3 L11: 0.2770 L22: 0.8190 REMARK 3 L33: 0.6481 L12: -0.1667 REMARK 3 L13: -0.4234 L23: 0.1813 REMARK 3 S TENSOR REMARK 3 S11: -0.0792 S12: -0.2980 S13: -0.2236 REMARK 3 S21: 0.3008 S22: 0.2230 S23: 0.1305 REMARK 3 S31: 0.3928 S32: -0.0991 S33: -0.0396 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN A AND RESID 437:460 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.473 41.006 5.016 REMARK 3 T TENSOR REMARK 3 T11: 0.2641 T22: 0.3429 REMARK 3 T33: 0.4887 T12: 0.0494 REMARK 3 T13: 0.0194 T23: 0.1847 REMARK 3 L TENSOR REMARK 3 L11: 2.9969 L22: 0.8142 REMARK 3 L33: 2.3568 L12: -0.6008 REMARK 3 L13: 1.7591 L23: 0.6051 REMARK 3 S TENSOR REMARK 3 S11: -0.0270 S12: -0.1252 S13: 0.3981 REMARK 3 S21: -0.0208 S22: 0.3275 S23: 0.1837 REMARK 3 S31: -0.1479 S32: -0.5302 S33: -0.2756 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN A AND RESID 461:491 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.512 31.315 -1.303 REMARK 3 T TENSOR REMARK 3 T11: 0.2567 T22: 0.3926 REMARK 3 T33: 0.4446 T12: 0.1263 REMARK 3 T13: -0.0232 T23: 0.0447 REMARK 3 L TENSOR REMARK 3 L11: 1.0130 L22: 1.1368 REMARK 3 L33: 1.0775 L12: -0.0823 REMARK 3 L13: -0.0302 L23: 0.0012 REMARK 3 S TENSOR REMARK 3 S11: 0.1633 S12: -0.2369 S13: -0.1023 REMARK 3 S21: -0.1196 S22: 0.0488 S23: -0.3270 REMARK 3 S31: 0.2513 S32: 0.3304 S33: -0.2038 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: ( CHAIN A AND RESID 492:533 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.788 20.449 -2.724 REMARK 3 T TENSOR REMARK 3 T11: 0.6098 T22: 0.2263 REMARK 3 T33: 0.3795 T12: -0.0425 REMARK 3 T13: -0.1414 T23: 0.1679 REMARK 3 L TENSOR REMARK 3 L11: 1.2928 L22: 3.8739 REMARK 3 L33: 1.7812 L12: -0.1493 REMARK 3 L13: 0.1582 L23: -0.4032 REMARK 3 S TENSOR REMARK 3 S11: 0.1229 S12: -0.1121 S13: -0.3140 REMARK 3 S21: -0.0407 S22: 0.0739 S23: 0.2400 REMARK 3 S31: 0.5011 S32: -0.3137 S33: -0.1258 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: ( CHAIN A AND RESID 534:569 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.972 27.943 -11.452 REMARK 3 T TENSOR REMARK 3 T11: 0.5887 T22: 0.1792 REMARK 3 T33: 0.3939 T12: 0.1022 REMARK 3 T13: -0.1060 T23: 0.0661 REMARK 3 L TENSOR REMARK 3 L11: 0.7393 L22: 5.4915 REMARK 3 L33: 1.1300 L12: 0.1494 REMARK 3 L13: -0.4410 L23: -0.4408 REMARK 3 S TENSOR REMARK 3 S11: 0.2391 S12: 0.0467 S13: -0.0953 REMARK 3 S21: -0.1061 S22: 0.1651 S23: -0.2440 REMARK 3 S31: 0.2831 S32: -0.0148 S33: -0.2843 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7ONN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1292116094. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, DESY REMARK 200 BEAMLINE : P11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS, STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18221 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920 REMARK 200 RESOLUTION RANGE LOW (A) : 47.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 18.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.3 REMARK 200 DATA REDUNDANCY IN SHELL : 14.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4BJP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MG/ML PBP3, 0.1 M MES, 25% (W/V) REMARK 280 PEG 1000, 0.5 MM AIC499, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 94.71333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 47.35667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 94.71333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 47.35667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 94.71333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 47.35667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 94.71333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 47.35667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 718 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 68 REMARK 465 THR A 69 REMARK 465 GLY A 225 REMARK 465 GLY A 226 REMARK 465 GLY A 227 REMARK 465 ALA A 228 REMARK 465 THR A 570 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 88 CG1 CG2 REMARK 470 LYS A 194 CE NZ REMARK 470 GLN A 203 CG CD OE1 NE2 REMARK 470 LYS A 256 NZ REMARK 470 LYS A 291 CE NZ REMARK 470 ARG A 335 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 336 CD1 REMARK 470 LYS A 342 CD CE NZ REMARK 470 LYS A 499 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 166 -162.50 -123.78 REMARK 500 ASN A 183 -156.10 -102.69 REMARK 500 MET A 275 106.66 -161.50 REMARK 500 SER A 280 -154.61 -132.50 REMARK 500 ASN A 285 82.75 -150.32 REMARK 500 ALA A 293 -13.10 63.95 REMARK 500 SER A 307 -9.43 -59.15 REMARK 500 ASN A 337 -122.36 60.94 REMARK 500 SER A 359 70.60 47.43 REMARK 500 ASN A 509 41.82 -97.27 REMARK 500 GLN A 523 82.99 -167.55 REMARK 500 ASP A 534 63.11 61.90 REMARK 500 ALA A 537 21.90 -162.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 12P A 602 REMARK 610 12P A 603 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7ONK RELATED DB: PDB DBREF 7ONN A 68 88 UNP P0AD68 FTSI_ECOLI 68 88 DBREF 7ONN A 164 203 UNP P0AD68 FTSI_ECOLI 164 203 DBREF 7ONN A 228 570 UNP P0AD68 FTSI_ECOLI 228 570 SEQADV 7ONN GLY A 89 UNP P0AD68 LINKER SEQADV 7ONN GLY A 90 UNP P0AD68 LINKER SEQADV 7ONN GLY A 91 UNP P0AD68 LINKER SEQADV 7ONN GLY A 225 UNP P0AD68 LINKER SEQADV 7ONN GLY A 226 UNP P0AD68 LINKER SEQADV 7ONN GLY A 227 UNP P0AD68 LINKER SEQRES 1 A 410 SER THR SER ARG GLY MET ILE THR ASP ARG SER GLY ARG SEQRES 2 A 410 PRO LEU ALA VAL SER VAL PRO VAL GLY GLY GLY GLU SER SEQRES 3 A 410 ARG ARG TYR TYR PRO SER GLY GLU VAL THR ALA HIS LEU SEQRES 4 A 410 ILE GLY PHE THR ASN VAL ASP SER GLN GLY ILE GLU GLY SEQRES 5 A 410 VAL GLU LYS SER PHE ASP LYS TRP LEU THR GLY GLN GLY SEQRES 6 A 410 GLY GLY ALA ALA HIS ASN LEU ALA LEU SER ILE ASP GLU SEQRES 7 A 410 ARG LEU GLN ALA LEU VAL TYR ARG GLU LEU ASN ASN ALA SEQRES 8 A 410 VAL ALA PHE ASN LYS ALA GLU SER GLY SER ALA VAL LEU SEQRES 9 A 410 VAL ASP VAL ASN THR GLY GLU VAL LEU ALA MET ALA ASN SEQRES 10 A 410 SER PRO SER TYR ASN PRO ASN ASN LEU SER GLY THR PRO SEQRES 11 A 410 LYS GLU ALA MET ARG ASN ARG THR ILE THR ASP VAL PHE SEQRES 12 A 410 GLU PRO GLY SER THR VAL LYS PRO MET VAL VAL MET THR SEQRES 13 A 410 ALA LEU GLN ARG GLY VAL VAL ARG GLU ASN SER VAL LEU SEQRES 14 A 410 ASN THR ILE PRO TYR ARG ILE ASN GLY HIS GLU ILE LYS SEQRES 15 A 410 ASP VAL ALA ARG TYR SER GLU LEU THR LEU THR GLY VAL SEQRES 16 A 410 LEU GLN LYS SER SER ASN VAL GLY VAL SER LYS LEU ALA SEQRES 17 A 410 LEU ALA MET PRO SER SER ALA LEU VAL ASP THR TYR SER SEQRES 18 A 410 ARG PHE GLY LEU GLY LYS ALA THR ASN LEU GLY LEU VAL SEQRES 19 A 410 GLY GLU ARG SER GLY LEU TYR PRO GLN LYS GLN ARG TRP SEQRES 20 A 410 SER ASP ILE GLU ARG ALA THR PHE SER PHE GLY TYR GLY SEQRES 21 A 410 LEU MET VAL THR PRO LEU GLN LEU ALA ARG VAL TYR ALA SEQRES 22 A 410 THR ILE GLY SER TYR GLY ILE TYR ARG PRO LEU SER ILE SEQRES 23 A 410 THR LYS VAL ASP PRO PRO VAL PRO GLY GLU ARG VAL PHE SEQRES 24 A 410 PRO GLU SER ILE VAL ARG THR VAL VAL HIS MET MET GLU SEQRES 25 A 410 SER VAL ALA LEU PRO GLY GLY GLY GLY VAL LYS ALA ALA SEQRES 26 A 410 ILE LYS GLY TYR ARG ILE ALA ILE LYS THR GLY THR ALA SEQRES 27 A 410 LYS LYS VAL GLY PRO ASP GLY ARG TYR ILE ASN LYS TYR SEQRES 28 A 410 ILE ALA TYR THR ALA GLY VAL ALA PRO ALA SER GLN PRO SEQRES 29 A 410 ARG PHE ALA LEU VAL VAL VAL ILE ASN ASP PRO GLN ALA SEQRES 30 A 410 GLY LYS TYR TYR GLY GLY ALA VAL SER ALA PRO VAL PHE SEQRES 31 A 410 GLY ALA ILE MET GLY GLY VAL LEU ARG THR MET ASN ILE SEQRES 32 A 410 GLU PRO ASP ALA LEU THR THR HET VL5 A 601 90 HET 12P A 602 19 HET 12P A 603 26 HETNAM VL5 (2S)-2-[(Z)-[1-(2-AZANYL-1,3-THIAZOL-4-YL)-2-[[(2S)-3- HETNAM 2 VL5 METHYL-1-OXIDANYLIDENE-3-(SULFOOXYAMINO)BUTAN-2- HETNAM 3 VL5 YL]AMINO]-2-OXIDANYLIDENE-ETHYLIDENE]AMINO]OXY-3-[4- HETNAM 4 VL5 [N-[(3R)-PIPERIDIN-3- HETNAM 5 VL5 YL]CARBAMIMIDOYL]PHENOXY]PROPANOIC ACID HETNAM 12P DODECAETHYLENE GLYCOL HETSYN VL5 AIC499 (BOUND) HETSYN 12P POLYETHYLENE GLYCOL PEG400 FORMUL 2 VL5 C25 H34 N8 O10 S2 FORMUL 3 12P 2(C24 H50 O13) FORMUL 5 HOH *60(H2 O) HELIX 1 AA1 SER A 171 VAL A 174 5 4 HELIX 2 AA2 THR A 175 GLY A 180 1 6 HELIX 3 AA3 GLU A 190 PHE A 196 1 7 HELIX 4 AA4 ASP A 237 LYS A 256 1 20 HELIX 5 AA5 ASN A 296 ASP A 301 1 6 HELIX 6 AA6 PRO A 305 THR A 308 5 4 HELIX 7 AA7 VAL A 309 ARG A 320 1 12 HELIX 8 AA8 LEU A 352 LYS A 358 1 7 HELIX 9 AA9 SER A 360 ALA A 370 1 11 HELIX 10 AB1 SER A 373 PHE A 383 1 11 HELIX 11 AB2 SER A 408 SER A 416 1 9 HELIX 12 AB3 THR A 424 SER A 437 1 14 HELIX 13 AB4 PRO A 460 MET A 471 1 12 HELIX 14 AB5 GLU A 472 ALA A 475 5 4 HELIX 15 AB6 GLY A 481 ALA A 485 5 5 HELIX 16 AB7 TYR A 541 SER A 546 1 6 HELIX 17 AB8 SER A 546 MET A 561 1 16 SHEET 1 AA1 3 PRO A 81 ALA A 83 0 SHEET 2 AA1 3 ILE A 74 THR A 75 -1 N ILE A 74 O LEU A 82 SHEET 3 AA1 3 LEU A 232 ALA A 233 1 O LEU A 232 N THR A 75 SHEET 1 AA2 5 VAL A 272 SER A 278 0 SHEET 2 AA2 5 SER A 259 ASP A 266 -1 N ALA A 262 O ALA A 276 SHEET 3 AA2 5 PHE A 526 ASN A 533 -1 O VAL A 531 N SER A 261 SHEET 4 AA2 5 TYR A 507 ALA A 519 -1 N GLY A 517 O LEU A 528 SHEET 5 AA2 5 ALA A 492 VAL A 501 -1 N LYS A 500 O LYS A 510 SHEET 1 AA3 2 VAL A 328 ASN A 330 0 SHEET 2 AA3 2 GLU A 349 THR A 351 -1 O LEU A 350 N LEU A 329 SHEET 1 AA4 2 TYR A 334 ILE A 336 0 SHEET 2 AA4 2 HIS A 339 ILE A 341 -1 O ILE A 341 N TYR A 334 SHEET 1 AA5 2 ILE A 440 TYR A 441 0 SHEET 2 AA5 2 GLU A 456 ARG A 457 -1 O GLU A 456 N TYR A 441 LINK OG SER A 307 C39AVL5 A 601 1555 1555 1.45 LINK OG SER A 307 C39BVL5 A 601 1555 1555 1.44 CISPEP 1 SER A 278 PRO A 279 0 0.30 CISPEP 2 PRO A 451 PRO A 452 0 4.59 CISPEP 3 ALA A 519 PRO A 520 0 -5.74 CRYST1 110.383 110.383 142.070 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009059 0.005230 0.000000 0.00000 SCALE2 0.000000 0.010461 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007039 0.00000