HEADER MEMBRANE PROTEIN 25-MAY-21 7ONO TITLE CRYSTAL STRUCTURE OF PBP3 TRANSPEPTIDASE DOMAIN FROM E. COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDOGLYCAN D,D-TRANSPEPTIDASE FTSI; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ESSENTIAL CELL DIVISION PROTEIN FTSI,MUREIN TRANSPEPTIDASE, COMPND 5 PENICILLIN-BINDING PROTEIN 3,PBP-3,PEPTIDOGLYCAN SYNTHASE FTSI; COMPND 6 EC: 3.4.16.4; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: FTSI, PBPB, B0084, JW0082; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PBP3, PEPTIDOGLYCAN SYNTHESIS, TRANSPEPTIDASE DOMAIN, MEMBRANE KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.FREISCHEM,I.GRIMM,O.H.WEIERGRAEBER REVDAT 3 31-JAN-24 7ONO 1 REMARK REVDAT 2 22-SEP-21 7ONO 1 JRNL REVDAT 1 04-AUG-21 7ONO 0 JRNL AUTH S.FREISCHEM,I.GRIMM,A.LOPEZ-PEREZ,D.WILLBOLD,B.KLENKE, JRNL AUTH 2 C.VUONG,A.J.DINGLEY,O.H.WEIERGRABER JRNL TITL INTERACTION MODE OF THE NOVEL MONOBACTAM AIC499 TARGETING JRNL TITL 2 PENICILLIN BINDING PROTEIN 3 OF GRAM-NEGATIVE BACTERIA. JRNL REF BIOMOLECULES V. 11 2021 JRNL REFN ESSN 2218-273X JRNL PMID 34356681 JRNL DOI 10.3390/BIOM11071057 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.1 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 40.8 REMARK 3 NUMBER OF REFLECTIONS : 9456 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 469 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.7400 - 3.3100 0.88 6686 337 0.2162 0.2701 REMARK 3 2 3.3100 - 2.6300 0.25 1803 98 0.3353 0.3549 REMARK 3 3 2.6300 - 2.3000 0.07 498 34 0.3958 0.4372 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.221 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.474 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.001 3096 REMARK 3 ANGLE : 0.403 4212 REMARK 3 CHIRALITY : 0.040 484 REMARK 3 PLANARITY : 0.004 548 REMARK 3 DIHEDRAL : 8.264 1130 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 201 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.2347 35.7737 -16.1352 REMARK 3 T TENSOR REMARK 3 T11: 0.4269 T22: 1.2452 REMARK 3 T33: 0.5952 T12: 0.2208 REMARK 3 T13: 0.0575 T23: 0.6174 REMARK 3 L TENSOR REMARK 3 L11: 0.0842 L22: 3.9809 REMARK 3 L33: 4.9230 L12: 0.2159 REMARK 3 L13: 0.6362 L23: 0.9533 REMARK 3 S TENSOR REMARK 3 S11: 0.4084 S12: 0.5799 S13: 0.4077 REMARK 3 S21: 0.0444 S22: 0.0745 S23: 0.8143 REMARK 3 S31: -0.0157 S32: -2.0450 S33: -0.8277 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 202 THROUGH 278 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.3736 31.9920 -11.9601 REMARK 3 T TENSOR REMARK 3 T11: 0.5101 T22: 0.4503 REMARK 3 T33: 0.3296 T12: 0.3015 REMARK 3 T13: -0.0078 T23: 0.2153 REMARK 3 L TENSOR REMARK 3 L11: 2.7423 L22: 2.1121 REMARK 3 L33: 3.1772 L12: 0.4000 REMARK 3 L13: 0.4412 L23: 0.0627 REMARK 3 S TENSOR REMARK 3 S11: 0.6623 S12: 0.1450 S13: 0.1751 REMARK 3 S21: -0.1657 S22: 0.0003 S23: 0.3682 REMARK 3 S31: 0.0496 S32: -0.6735 S33: -0.2160 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 279 THROUGH 348 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.7268 19.4960 3.3336 REMARK 3 T TENSOR REMARK 3 T11: 0.6223 T22: 0.5904 REMARK 3 T33: 0.3856 T12: 0.1063 REMARK 3 T13: -0.0800 T23: 0.1192 REMARK 3 L TENSOR REMARK 3 L11: 3.1709 L22: 2.7422 REMARK 3 L33: 3.7032 L12: -1.1033 REMARK 3 L13: 0.4012 L23: -1.1409 REMARK 3 S TENSOR REMARK 3 S11: 0.1706 S12: 0.0839 S13: -0.5169 REMARK 3 S21: -0.0565 S22: 0.3386 S23: -0.0581 REMARK 3 S31: 1.1829 S32: 0.3738 S33: -0.4777 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 349 THROUGH 460 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.5650 26.0772 8.9402 REMARK 3 T TENSOR REMARK 3 T11: 0.6228 T22: 0.6946 REMARK 3 T33: 0.1732 T12: 0.2538 REMARK 3 T13: -0.0827 T23: 0.1452 REMARK 3 L TENSOR REMARK 3 L11: 2.8242 L22: 0.8963 REMARK 3 L33: 2.1400 L12: 0.1939 REMARK 3 L13: -0.0335 L23: 0.0263 REMARK 3 S TENSOR REMARK 3 S11: 0.2591 S12: -1.0674 S13: -0.2880 REMARK 3 S21: 0.3641 S22: 0.1863 S23: 0.1031 REMARK 3 S31: 0.6652 S32: 0.1176 S33: -0.3082 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 461 THROUGH 533 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.8635 24.9926 -1.9332 REMARK 3 T TENSOR REMARK 3 T11: 0.5621 T22: 0.4061 REMARK 3 T33: 0.3448 T12: 0.2768 REMARK 3 T13: -0.0476 T23: -0.0238 REMARK 3 L TENSOR REMARK 3 L11: 4.1572 L22: 0.9903 REMARK 3 L33: 4.2529 L12: -0.5800 REMARK 3 L13: 0.4431 L23: 0.5114 REMARK 3 S TENSOR REMARK 3 S11: 0.3716 S12: -0.7008 S13: -0.3974 REMARK 3 S21: -0.0989 S22: -0.1907 S23: -0.2617 REMARK 3 S31: 0.7695 S32: 0.2297 S33: -0.2323 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 534 THROUGH 569 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.1876 27.9438 -11.7964 REMARK 3 T TENSOR REMARK 3 T11: 0.5673 T22: 0.4170 REMARK 3 T33: 0.4313 T12: 0.3341 REMARK 3 T13: -0.1020 T23: -0.0186 REMARK 3 L TENSOR REMARK 3 L11: 2.7885 L22: 2.2091 REMARK 3 L33: 2.6133 L12: -0.1450 REMARK 3 L13: -0.7333 L23: 0.5291 REMARK 3 S TENSOR REMARK 3 S11: 0.2754 S12: 0.1419 S13: -0.0382 REMARK 3 S21: -0.7331 S22: 0.2977 S23: -0.7079 REMARK 3 S31: 0.4651 S32: 0.5586 S33: -0.3853 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7ONO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1292116100. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, DESY REMARK 200 BEAMLINE : P11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9457 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.298 REMARK 200 RESOLUTION RANGE LOW (A) : 47.743 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 200 DATA REDUNDANCY : 17.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.6 REMARK 200 DATA REDUNDANCY IN SHELL : 15.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4BJP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14.4 MG/ML PBP3, 0.1 M SODIUM REMARK 280 CACODYLATE, 5% (W/V) PEG 8000, 20% (V/V) MPD, 0.2% (W/V) BETAINE, REMARK 280 0.2% (W/V) L-GLUTAMIC ACID, 0.2% (W/V) L-PROLINE, 0.2% (W/V) REMARK 280 TAURINE, 0.2% (W/V) TRIMETHLYAMIN N-OXIDE, 0.02 M HEPES, PH 6.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 95.48600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 47.74300 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 95.48600 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 47.74300 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 95.48600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 47.74300 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 95.48600 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 47.74300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 68 REMARK 465 GLY A 542 REMARK 465 GLY A 543 REMARK 465 THR A 570 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 69 OG1 CG2 REMARK 470 GLU A 164 CG CD OE1 OE2 REMARK 470 ARG A 166 NE CZ NH1 NH2 REMARK 470 ASN A 183 CG OD1 ND2 REMARK 470 VAL A 184 CG1 CG2 REMARK 470 LYS A 256 CD CE NZ REMARK 470 LYS A 291 CE NZ REMARK 470 GLU A 292 CG CD OE1 OE2 REMARK 470 THR A 331 OG1 CG2 REMARK 470 GLU A 340 CG CD OE1 OE2 REMARK 470 LYS A 342 CG CD CE NZ REMARK 470 ARG A 346 CD NE CZ NH1 NH2 REMARK 470 GLN A 403 CD OE1 NE2 REMARK 470 LYS A 487 CG CD CE NZ REMARK 470 GLN A 536 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 83 115.04 -161.81 REMARK 500 ASN A 183 -145.92 -86.25 REMARK 500 SER A 186 70.76 -109.86 REMARK 500 ASN A 390 75.77 55.65 REMARK 500 LYS A 494 110.27 -160.77 REMARK 500 ALA A 498 -163.38 -117.22 REMARK 500 ASN A 509 48.58 -82.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TMO A 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7ONN RELATED DB: PDB DBREF 7ONO A 68 88 UNP P0AD68 FTSI_ECOLI 68 88 DBREF 7ONO A 164 203 UNP P0AD68 FTSI_ECOLI 164 203 DBREF 7ONO A 228 570 UNP P0AD68 FTSI_ECOLI 228 570 SEQADV 7ONO GLY A 89 UNP P0AD68 LINKER SEQADV 7ONO GLY A 90 UNP P0AD68 LINKER SEQADV 7ONO GLY A 91 UNP P0AD68 LINKER SEQADV 7ONO GLY A 204 UNP P0AD68 LINKER SEQADV 7ONO GLY A 205 UNP P0AD68 LINKER SEQADV 7ONO GLY A 206 UNP P0AD68 LINKER SEQRES 1 A 410 SER THR SER ARG GLY MET ILE THR ASP ARG SER GLY ARG SEQRES 2 A 410 PRO LEU ALA VAL SER VAL PRO VAL GLY GLY GLY GLU SER SEQRES 3 A 410 ARG ARG TYR TYR PRO SER GLY GLU VAL THR ALA HIS LEU SEQRES 4 A 410 ILE GLY PHE THR ASN VAL ASP SER GLN GLY ILE GLU GLY SEQRES 5 A 410 VAL GLU LYS SER PHE ASP LYS TRP LEU THR GLY GLN GLY SEQRES 6 A 410 GLY GLY ALA ALA HIS ASN LEU ALA LEU SER ILE ASP GLU SEQRES 7 A 410 ARG LEU GLN ALA LEU VAL TYR ARG GLU LEU ASN ASN ALA SEQRES 8 A 410 VAL ALA PHE ASN LYS ALA GLU SER GLY SER ALA VAL LEU SEQRES 9 A 410 VAL ASP VAL ASN THR GLY GLU VAL LEU ALA MET ALA ASN SEQRES 10 A 410 SER PRO SER TYR ASN PRO ASN ASN LEU SER GLY THR PRO SEQRES 11 A 410 LYS GLU ALA MET ARG ASN ARG THR ILE THR ASP VAL PHE SEQRES 12 A 410 GLU PRO GLY SER THR VAL LYS PRO MET VAL VAL MET THR SEQRES 13 A 410 ALA LEU GLN ARG GLY VAL VAL ARG GLU ASN SER VAL LEU SEQRES 14 A 410 ASN THR ILE PRO TYR ARG ILE ASN GLY HIS GLU ILE LYS SEQRES 15 A 410 ASP VAL ALA ARG TYR SER GLU LEU THR LEU THR GLY VAL SEQRES 16 A 410 LEU GLN LYS SER SER ASN VAL GLY VAL SER LYS LEU ALA SEQRES 17 A 410 LEU ALA MET PRO SER SER ALA LEU VAL ASP THR TYR SER SEQRES 18 A 410 ARG PHE GLY LEU GLY LYS ALA THR ASN LEU GLY LEU VAL SEQRES 19 A 410 GLY GLU ARG SER GLY LEU TYR PRO GLN LYS GLN ARG TRP SEQRES 20 A 410 SER ASP ILE GLU ARG ALA THR PHE SER PHE GLY TYR GLY SEQRES 21 A 410 LEU MET VAL THR PRO LEU GLN LEU ALA ARG VAL TYR ALA SEQRES 22 A 410 THR ILE GLY SER TYR GLY ILE TYR ARG PRO LEU SER ILE SEQRES 23 A 410 THR LYS VAL ASP PRO PRO VAL PRO GLY GLU ARG VAL PHE SEQRES 24 A 410 PRO GLU SER ILE VAL ARG THR VAL VAL HIS MET MET GLU SEQRES 25 A 410 SER VAL ALA LEU PRO GLY GLY GLY GLY VAL LYS ALA ALA SEQRES 26 A 410 ILE LYS GLY TYR ARG ILE ALA ILE LYS THR GLY THR ALA SEQRES 27 A 410 LYS LYS VAL GLY PRO ASP GLY ARG TYR ILE ASN LYS TYR SEQRES 28 A 410 ILE ALA TYR THR ALA GLY VAL ALA PRO ALA SER GLN PRO SEQRES 29 A 410 ARG PHE ALA LEU VAL VAL VAL ILE ASN ASP PRO GLN ALA SEQRES 30 A 410 GLY LYS TYR TYR GLY GLY ALA VAL SER ALA PRO VAL PHE SEQRES 31 A 410 GLY ALA ILE MET GLY GLY VAL LEU ARG THR MET ASN ILE SEQRES 32 A 410 GLU PRO ASP ALA LEU THR THR HET TMO A 601 5 HETNAM TMO TRIMETHYLAMINE OXIDE FORMUL 2 TMO C3 H9 N O FORMUL 3 HOH *16(H2 O) HELIX 1 AA1 SER A 171 VAL A 174 5 4 HELIX 2 AA2 THR A 175 GLY A 180 1 6 HELIX 3 AA3 GLU A 190 PHE A 196 1 7 HELIX 4 AA4 PHE A 196 GLY A 202 1 7 HELIX 5 AA5 ASP A 237 ASN A 255 1 19 HELIX 6 AA6 PRO A 290 MET A 294 5 5 HELIX 7 AA7 ASN A 296 ASP A 301 1 6 HELIX 8 AA8 PRO A 305 THR A 308 5 4 HELIX 9 AA9 VAL A 309 ARG A 320 1 12 HELIX 10 AB1 LEU A 352 SER A 359 1 8 HELIX 11 AB2 SER A 360 ALA A 370 1 11 HELIX 12 AB3 SER A 373 PHE A 383 1 11 HELIX 13 AB4 ILE A 410 PHE A 417 1 8 HELIX 14 AB5 THR A 424 SER A 437 1 14 HELIX 15 AB6 PRO A 460 MET A 471 1 12 HELIX 16 AB7 GLU A 472 ALA A 475 5 4 HELIX 17 AB8 GLY A 481 ALA A 485 5 5 HELIX 18 AB9 SER A 546 MET A 561 1 16 SHEET 1 AA1 4 SER A 165 TYR A 168 0 SHEET 2 AA1 4 PRO A 81 PRO A 87 -1 N VAL A 84 O TYR A 168 SHEET 3 AA1 4 ILE A 74 THR A 75 -1 N ILE A 74 O LEU A 82 SHEET 4 AA1 4 LEU A 232 ALA A 233 1 O LEU A 232 N THR A 75 SHEET 1 AA2 5 VAL A 272 SER A 278 0 SHEET 2 AA2 5 ALA A 257 ASP A 266 -1 N GLY A 260 O SER A 278 SHEET 3 AA2 5 PHE A 526 PRO A 535 -1 O ALA A 527 N VAL A 265 SHEET 4 AA2 5 TYR A 507 ALA A 519 -1 N ALA A 513 O ILE A 532 SHEET 5 AA2 5 ALA A 492 VAL A 501 -1 N LYS A 500 O LYS A 510 SHEET 1 AA3 2 VAL A 328 ASN A 330 0 SHEET 2 AA3 2 GLU A 349 THR A 351 -1 O LEU A 350 N LEU A 329 SHEET 1 AA4 2 TYR A 334 ARG A 335 0 SHEET 2 AA4 2 GLU A 340 ILE A 341 -1 O ILE A 341 N TYR A 334 SHEET 1 AA5 2 ILE A 440 TYR A 441 0 SHEET 2 AA5 2 GLU A 456 ARG A 457 -1 O GLU A 456 N TYR A 441 CISPEP 1 SER A 278 PRO A 279 0 -0.55 CISPEP 2 PRO A 451 PRO A 452 0 0.92 CISPEP 3 ALA A 519 PRO A 520 0 -4.04 SITE 1 AC1 2 PHE A 254 PRO A 548 CRYST1 109.280 109.280 143.229 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009151 0.005283 0.000000 0.00000 SCALE2 0.000000 0.010566 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006982 0.00000