HEADER OXIDOREDUCTASE 26-MAY-21 7OO5 TITLE CRYSTAL STRUCTURE OF THE LIGNIN PEROXIDASE (APELIP) FROM AGROCYBE TITLE 2 PEDIADES COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIGNIN PEROXIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.11.1.14; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROCYBE PEDIADES; SOURCE 3 ORGANISM_TAXID: 84607; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LIGNINOLYTIC PEROXIDASE, PLANT CELL-WALL DEGRADING ENZYME, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.ROMERO,F.J.RUIZ-DUENAS REVDAT 2 31-JAN-24 7OO5 1 REMARK REVDAT 1 13-OCT-21 7OO5 0 JRNL AUTH M.I.SANCHEZ-RUIZ,I.AYUSO-FERNANDEZ,J.RENCORET, JRNL AUTH 2 A.M.GONZALEZ-RAMIREZ,D.LINDE,I.DAVO-SIGUERO,A.ROMERO, JRNL AUTH 3 A.GUTIERREZ,A.T.MARTINEZ,F.J.RUIZ-DUENAS JRNL TITL AGARICALES MUSHROOM LIGNIN PEROXIDASE: FROM JRNL TITL 2 STRUCTURE-FUNCTION TO DEGRADATIVE CAPABILITIES. JRNL REF ANTIOXIDANTS V. 10 2021 JRNL REFN ESSN 2076-3921 JRNL PMID 34573078 JRNL DOI 10.3390/ANTIOX10091446 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH F.J.RUIZ-DUENAS,J.M.BARRASA,M.SANCHEZ-GARCIA,S.CAMARERO, REMARK 1 AUTH 2 S.MIYAUCHI,A.SERRANO,D.LINDE,R.BABIKER,E.DRULA, REMARK 1 AUTH 3 I.AYUSO-FERNANDEZ,R.PACHECO,G.PADILLA,P.FERREIRA,J.BARRIUSO, REMARK 1 AUTH 4 H.KELLNER,R.CASTANERA,M.ALFARO,L.RAMIREZ,A.G.PISABARRO, REMARK 1 AUTH 5 R.RILEY,A.KUO,W.ANDREOPOULOS,K.LABUTTI,J.PANGILINAN,A.TRITT, REMARK 1 AUTH 6 A.LIPZEN,G.HE,M.YAN,V.NG,I.V.GRIGORIEV,D.CULLEN,F.MARTIN, REMARK 1 AUTH 7 M.N.ROSSO,B.HENRISSAT,D.HIBBETT,A.T.MARTINEZ REMARK 1 TITL GENOMIC ANALYSIS ENLIGHTENS AGARICALES LIFESTYLE EVOLUTION REMARK 1 TITL 2 AND INCREASING PEROXIDASE DIVERSITY. REMARK 1 REF MOL.BIOL.EVOL. V. 38 1428 2021 REMARK 1 REFN ESSN 1537-1719 REMARK 1 PMID 33211093 REMARK 1 DOI 10.1093/MOLBEV/MSAA301 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 26256 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.840 REMARK 3 FREE R VALUE TEST SET COUNT : 1270 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.92 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2733 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.3587 REMARK 3 BIN FREE R VALUE SET COUNT : 140 REMARK 3 BIN FREE R VALUE : 0.4156 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2413 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 47 REMARK 3 SOLVENT ATOMS : 83 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.96 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.243 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.11 REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7OO5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1292116116. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97924 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26316 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 74.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.52200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4BLN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG500 MME, 100MM MES PH 6.5, 10MM REMARK 280 ZNSO4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.06300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.38400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.47500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.38400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.06300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.47500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 306 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 559 O HOH A 578 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 2 166.30 179.20 REMARK 500 ASP A 31 51.62 39.12 REMARK 500 ASP A 253 76.02 -116.83 REMARK 500 CYS A 279 31.32 -140.05 REMARK 500 ILE A 319 137.94 -38.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A 217 THR A 218 -146.97 REMARK 500 ALA A 320 GLY A 321 148.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 49 O REMARK 620 2 ASP A 49 OD1 80.1 REMARK 620 3 GLY A 62 O 67.0 93.8 REMARK 620 4 ASP A 64 OD1 135.3 84.1 72.7 REMARK 620 5 SER A 66 OG 141.1 94.8 151.7 81.5 REMARK 620 6 HOH A 509 O 75.1 87.3 141.2 145.6 66.2 REMARK 620 7 HOH A 527 O 100.6 172.4 93.4 100.3 79.9 85.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 405 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 71 NE2 REMARK 620 2 GLU A 84 OE1 156.9 REMARK 620 3 GLU A 84 OE2 109.6 57.5 REMARK 620 4 ASP A 253 OD1 91.5 65.5 57.1 REMARK 620 5 ASP A 253 OD2 90.6 66.3 54.7 3.1 REMARK 620 6 HOH A 526 O 107.6 73.7 126.9 85.8 88.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 171 NE2 REMARK 620 2 HEM A 401 NA 97.1 REMARK 620 3 HEM A 401 NB 104.3 87.6 REMARK 620 4 HEM A 401 NC 102.3 160.6 87.7 REMARK 620 5 HEM A 401 ND 100.3 88.1 155.4 88.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 172 O REMARK 620 2 SER A 172 OG 71.0 REMARK 620 3 ASP A 189 OD1 72.5 115.6 REMARK 620 4 ASP A 189 OD2 87.7 79.7 47.8 REMARK 620 5 THR A 191 O 86.0 147.9 76.1 122.5 REMARK 620 6 THR A 191 OG1 143.0 145.7 81.4 94.0 62.1 REMARK 620 7 LEU A 194 O 83.8 82.5 141.9 162.0 72.8 102.4 REMARK 620 8 ASP A 196 OD1 143.7 73.0 128.9 90.1 124.7 73.3 87.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 180 OD2 REMARK 620 2 HIS A 217 ND1 91.6 REMARK 620 3 GLU A 220 OE2 162.6 97.6 REMARK 620 N 1 2 DBREF 7OO5 A 1 331 PDB 7OO5 7OO5 1 331 SEQRES 1 A 331 ALA VAL THR CYS PRO THR GLY GLN THR THR ALA ASN GLU SEQRES 2 A 331 ALA CYS CYS VAL LEU PHE PRO VAL ILE ASP LEU LEU GLN SEQRES 3 A 331 GLU GLU LEU PHE ASP GLY GLY GLU CYS GLY GLU GLU ALA SEQRES 4 A 331 HIS ALA ALA LEU ARG LEU ALA PHE HIS ASP ALA ILE GLY SEQRES 5 A 331 PHE SER LYS ASN GLY GLY LYS GLY GLY GLY ALA ASP GLY SEQRES 6 A 331 SER ILE LEU ALA PHE HIS GLN THR GLU THR THR TYR ALA SEQRES 7 A 331 ALA ASN SER GLY ILE GLU ASP ILE ILE THR ALA GLN LEU SEQRES 8 A 331 PRO ILE PHE GLN LYS THR ASN LEU THR ALA GLY ASP PHE SEQRES 9 A 331 VAL HIS LEU ALA ALA ALA ILE GLY THR GLY ASN CYS PRO SEQRES 10 A 331 GLY SER PRO GLN LEU ALA TYR SER PHE GLY ARG PRO PRO SEQRES 11 A 331 PRO VAL ALA PRO ALA PRO ASP GLY THR VAL PRO GLU PRO SEQRES 12 A 331 THR ASP SER VAL THR ASP ILE LEU ALA ARG PHE SER GLU SEQRES 13 A 331 ALA GLY PHE VAL THR ALA GLU VAL ILE TRP LEU LEU ALA SEQRES 14 A 331 SER HIS SER ILE ALA ALA ALA SER LYS ILE ASP THR SER SEQRES 15 A 331 ALA PRO ARG THR PRO PHE ASP SER THR PRO ALA LEU PHE SEQRES 16 A 331 ASP THR GLN PHE TYR LEU GLU THR ILE LEU ASN GLY THR SEQRES 17 A 331 LEU LEU PRO GLY ASP GLY GLY ALA HIS THR GLY GLU VAL SEQRES 18 A 331 LEU SER PRO ILE ALA GLY GLU MET ARG LEU GLN SER ASP SEQRES 19 A 331 PHE ALA PHE ALA GLN ASP PRO ARG THR ALA CYS LEU TRP SEQRES 20 A 331 GLN GLU PRO ILE ASN ASP GLN ALA PHE ILE GLN GLY LYS SEQRES 21 A 331 PHE PHE ALA ALA MET LYS LYS LEU GLN VAL LEU GLY GLN SEQRES 22 A 331 THR GLY LEU THR ASP CYS SER ASP VAL ILE PRO VAL PRO SEQRES 23 A 331 ALA SER LEU PRO GLY PRO ILE THR PHE PRO ALA GLY PHE SEQRES 24 A 331 SER GLU ALA ASP VAL ILE SER ALA CYS THR ALA THR PRO SEQRES 25 A 331 LEU PRO SER LEU ALA THR ILE ALA GLY PRO LYS PRO THR SEQRES 26 A 331 ILE PRO PRO VAL PRO LEU HET HEM A 401 43 HET CA A 402 1 HET CA A 403 1 HET ZN A 404 1 HET ZN A 405 1 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM CA CALCIUM ION HETNAM ZN ZINC ION HETSYN HEM HEME FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 CA 2(CA 2+) FORMUL 5 ZN 2(ZN 2+) FORMUL 7 HOH *83(H2 O) HELIX 1 AA1 ASN A 12 CYS A 16 5 5 HELIX 2 AA2 VAL A 17 LEU A 29 1 13 HELIX 3 AA3 GLY A 36 GLY A 52 1 17 HELIX 4 AA4 GLY A 65 PHE A 70 1 6 HELIX 5 AA5 PHE A 70 THR A 75 1 6 HELIX 6 AA6 THR A 76 SER A 81 5 6 HELIX 7 AA7 GLY A 82 LYS A 96 1 15 HELIX 8 AA8 THR A 100 ASN A 115 1 16 HELIX 9 AA9 SER A 146 GLY A 158 1 13 HELIX 10 AB1 VAL A 160 LEU A 168 1 9 HELIX 11 AB2 ALA A 169 ILE A 173 5 5 HELIX 12 AB3 THR A 197 THR A 203 1 7 HELIX 13 AB4 GLN A 232 ASP A 240 1 9 HELIX 14 AB5 THR A 243 GLU A 249 1 7 HELIX 15 AB6 ASP A 253 GLN A 269 1 17 HELIX 16 AB7 SER A 280 ILE A 283 5 4 HELIX 17 AB8 SER A 300 VAL A 304 5 5 SHEET 1 AA1 2 SER A 125 PHE A 126 0 SHEET 2 AA1 2 THR A 277 ASP A 278 -1 O THR A 277 N PHE A 126 SHEET 1 AA2 2 ALA A 175 ALA A 176 0 SHEET 2 AA2 2 THR A 186 PRO A 187 -1 O THR A 186 N ALA A 176 SHEET 1 AA3 2 GLU A 220 VAL A 221 0 SHEET 2 AA3 2 ARG A 230 LEU A 231 -1 O ARG A 230 N VAL A 221 SSBOND 1 CYS A 4 CYS A 16 1555 1555 2.02 SSBOND 2 CYS A 15 CYS A 279 1555 1555 2.04 SSBOND 3 CYS A 35 CYS A 116 1555 1555 2.08 SSBOND 4 CYS A 245 CYS A 308 1555 1555 2.04 LINK O ASP A 49 CA CA A 402 1555 1555 2.61 LINK OD1 ASP A 49 CA CA A 402 1555 1555 2.32 LINK O GLY A 62 CA CA A 402 1555 1555 2.32 LINK OD1 ASP A 64 CA CA A 402 1555 1555 2.54 LINK OG SER A 66 CA CA A 402 1555 1555 2.59 LINK NE2 HIS A 71 ZN ZN A 405 1555 1555 2.14 LINK OE1 GLU A 84 ZN ZN A 405 1555 1555 2.15 LINK OE2 GLU A 84 ZN ZN A 405 1555 1555 2.42 LINK NE2 HIS A 171 FE HEM A 401 1555 1555 2.34 LINK O SER A 172 CA CA A 403 1555 1555 2.50 LINK OG SER A 172 CA CA A 403 1555 1555 2.56 LINK OD2 ASP A 180 ZN ZN A 404 1555 1555 2.42 LINK OD1 ASP A 189 CA CA A 403 1555 1555 2.94 LINK OD2 ASP A 189 CA CA A 403 1555 1555 2.33 LINK O THR A 191 CA CA A 403 1555 1555 2.49 LINK OG1 THR A 191 CA CA A 403 1555 1555 2.60 LINK O LEU A 194 CA CA A 403 1555 1555 2.42 LINK OD1 ASP A 196 CA CA A 403 1555 1555 2.50 LINK ND1 HIS A 217 ZN ZN A 404 1555 1555 2.62 LINK OE2 GLU A 220 ZN ZN A 404 1555 1555 1.90 LINK OD1 ASP A 253 ZN ZN A 405 1555 3554 2.70 LINK OD2 ASP A 253 ZN ZN A 405 1555 3554 2.31 LINK CA CA A 402 O HOH A 509 1555 1555 2.72 LINK CA CA A 402 O HOH A 527 1555 1555 2.26 LINK ZN ZN A 405 O HOH A 526 1555 1555 2.32 CRYST1 48.126 74.950 82.768 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020779 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013342 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012082 0.00000