data_7OOO # _entry.id 7OOO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7OOO pdb_00007ooo 10.2210/pdb7ooo/pdb WWPDB D_1292116128 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-08-03 2 'Structure model' 2 0 2023-03-15 3 'Structure model' 2 1 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Atomic model' 2 2 'Structure model' 'Derived calculations' 3 2 'Structure model' 'Non-polymer description' 4 2 'Structure model' 'Polymer sequence' 5 2 'Structure model' 'Structure summary' 6 3 'Structure model' 'Data collection' 7 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' atom_site 2 2 'Structure model' chem_comp 3 2 'Structure model' entity 4 2 'Structure model' entity_poly 5 2 'Structure model' struct_conn 6 3 'Structure model' chem_comp_atom 7 3 'Structure model' chem_comp_bond 8 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_atom_site.auth_atom_id' 2 2 'Structure model' '_atom_site.label_atom_id' 3 2 'Structure model' '_chem_comp.formula' 4 2 'Structure model' '_chem_comp.formula_weight' 5 2 'Structure model' '_chem_comp.name' 6 2 'Structure model' '_entity.formula_weight' 7 2 'Structure model' '_entity.pdbx_description' 8 2 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can' 9 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7OOO _pdbx_database_status.recvd_initial_deposition_date 2021-05-28 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Thorpe, C.' 1 0000-0002-1980-678X 'Hardwick, J.' 2 0000-0002-3117-1035 'McDonough, M.A.' 3 0000-0003-4664-6942 'Hall, J.P.' 4 0000-0003-3716-4378 'Baker, Y.R.' 5 0000-0002-0266-771X 'El-Sagheer, A.H.' 6 0000-0001-8706-1292 'Brown, T.' 7 0000-0002-6538-3036 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 13 _citation.language ? _citation.page_first 4036 _citation.page_last 4036 _citation.title 'An LNA-amide modification that enhances the cell uptake and activity of phosphorothioate exon-skipping oligonucleotides.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-022-31636-2 _citation.pdbx_database_id_PubMed 35821218 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Baker, Y.R.' 1 0000-0002-0266-771X primary 'Thorpe, C.' 2 0000-0002-1980-678X primary 'Chen, J.' 3 ? primary 'Poller, L.M.' 4 0000-0001-7385-0071 primary 'Cox, L.' 5 0000-0001-9450-6819 primary 'Kumar, P.' 6 ? primary 'Lim, W.F.' 7 0000-0002-1238-3040 primary 'Lie, L.' 8 ? primary 'McClorey, G.' 9 ? primary 'Epple, S.' 10 0000-0002-9078-3250 primary 'Singleton, D.' 11 ? primary 'McDonough, M.A.' 12 0000-0003-4664-6942 primary 'Hardwick, J.S.' 13 0000-0002-3117-1035 primary 'Christensen, K.E.' 14 0000-0003-1683-2066 primary 'Wood, M.J.A.' 15 0000-0002-5436-6011 primary 'Hall, J.P.' 16 0000-0003-3716-4378 primary 'El-Sagheer, A.H.' 17 0000-0001-8706-1292 primary 'Brown, T.' 18 0000-0002-6538-3036 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3') ; 3255.076 2 ? ? ? ? 2 polymer syn ;DNA (5'-D(*CP*TP*(05A)P*TP*CP*TP*TP*TP*G)-3') ; 3009.055 2 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 4 water nat water 18.015 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no CAAAGAAAAG CAAAGAAAAG A,D ? 2 polydeoxyribonucleotide no yes '(DC)(DT)(05A)(DT)(DC)(DT)(DT)(DT)(DG)' CTXTCTTTG B,E ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MAGNESIUM ION' MG 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 A n 1 3 A n 1 4 A n 1 5 G n 1 6 A n 1 7 A n 1 8 A n 1 9 A n 1 10 G n 2 1 DC n 2 2 DT n 2 3 05A n 2 4 DT n 2 5 DC n 2 6 DT n 2 7 DT n 2 8 DT n 2 9 DG n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 10 'synthetic construct' ? 32630 ? 2 1 sample 1 9 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 05A 'DNA linking' n ;[(1R,3R,4R,7S)-3-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-7-[2-[[(1S,3R,4R,7S)-3-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-7-oxidanyl-2,5-dioxabicyclo[2.2.1]heptan-1-yl]methylamino]-2-oxidanylidene-ethyl]-2,5-dioxabicyclo[2.2.1]heptan-1-yl]methyl dihydrogen phosphate ; ? 'C24 H30 N5 O14 P' 643.494 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 1 C C A . n A 1 2 A 2 2 2 A A A . n A 1 3 A 3 3 3 A A A . n A 1 4 A 4 4 4 A A A . n A 1 5 G 5 5 5 G G A . n A 1 6 A 6 6 6 A A A . n A 1 7 A 7 7 7 A A A . n A 1 8 A 8 8 8 A A A . n A 1 9 A 9 9 9 A A A . n A 1 10 G 10 10 10 G G A . n B 2 1 DC 1 11 11 DC DC B . n B 2 2 DT 2 12 12 DT DT B . n B 2 3 05A 3 13 13 05A RWQ B . n B 2 4 DT 4 14 14 DT DT B . n B 2 5 DC 5 15 15 DC DC B . n B 2 6 DT 6 16 16 DT DT B . n B 2 7 DT 7 17 17 DT DT B . n B 2 8 DT 8 18 18 DT DT B . n B 2 9 DG 9 19 19 DG DG B . n C 1 1 C 1 1 1 C C D . n C 1 2 A 2 2 2 A A D . n C 1 3 A 3 3 3 A A D . n C 1 4 A 4 4 4 A A D . n C 1 5 G 5 5 5 G G D . n C 1 6 A 6 6 6 A A D . n C 1 7 A 7 7 7 A A D . n C 1 8 A 8 8 8 A A D . n C 1 9 A 9 9 9 A A D . n C 1 10 G 10 10 10 G G D . n D 2 1 DC 1 11 11 DC DC E . n D 2 2 DT 2 12 12 DT DT E . n D 2 3 05A 3 13 13 05A RWQ E . n D 2 4 DT 4 14 14 DT DT E . n D 2 5 DC 5 15 15 DC DC E . n D 2 6 DT 6 16 16 DT DT E . n D 2 7 DT 7 17 17 DT DT E . n D 2 8 DT 8 18 18 DT DT E . n D 2 9 DG 9 19 19 DG DG E . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MG 1 101 1 MG MG B . F 3 MG 1 101 2 MG MG D . G 4 HOH 1 101 1 HOH HOH E . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.19.2_4158: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 7OOO _cell.details ? _cell.formula_units_Z ? _cell.length_a 49.150 _cell.length_a_esd ? _cell.length_b 49.150 _cell.length_b_esd ? _cell.length_c 90.960 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OOO _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7OOO _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.54 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 51.54 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;Drop solution 0.5 mM duplex, 40 mM Sodium chloride, 6.0 mM Potassium chloride, 20 mM Sodium cacodylate trihydrate pH 6.0, 15% (v/v) MPD, 6.0 mM Spermine tetrahydrochloride; Well solution Component concentrations are double the concentration of the drop solution and do not contain the oligonucleotide duplex ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER2 XE 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2020-02-10 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97950 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'DIAMOND BEAMLINE I04' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97950 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline I04 _diffrn_source.pdbx_synchrotron_site Diamond # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 7OOO _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.56 _reflns.d_resolution_low 31.08 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 4398 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.4 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 18.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 19.8 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.56 _reflns_shell.d_res_low 2.63 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 309 _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.329 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7OOO _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.57 _refine.ls_d_res_low 31.08 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 4349 _refine.ls_number_reflns_R_free 208 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.95 _refine.ls_percent_reflns_R_free 4.78 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2333 _refine.ls_R_factor_R_free 0.2513 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2326 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 7NRP _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 31.21 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.00 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.57 _refine_hist.d_res_low 31.08 _refine_hist.number_atoms_solvent 1 _refine_hist.number_atoms_total 837 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 834 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.007 ? 932 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.889 ? 1442 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 14.536 ? 434 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.095 ? 176 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.005 ? 42 ? f_plane_restr ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.57 _refine_ls_shell.d_res_low 31.08 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 208 _refine_ls_shell.number_reflns_R_work 4141 _refine_ls_shell.percent_reflns_obs 99.00 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.2513 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.2326 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 7OOO _struct.title 'The crystal structure of a DNA:RNA hybrid duplex sequence CTTTTCTTTG containing an LNA-Amide-LNA modification' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7OOO _struct_keywords.text 'Amide-LNA, duplex, DNA:RNA, DNA:RNA HYBRID, DNA-RNA HYBRID' _struct_keywords.pdbx_keywords 'DNA-RNA HYBRID' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 7OOO 7OOO ? 1 ? 1 2 PDB 7OOO 7OOO ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7OOO A 1 ? 10 ? 7OOO 1 ? 10 ? 1 10 2 2 7OOO B 1 ? 9 ? 7OOO 11 ? 19 ? 11 19 3 1 7OOO D 1 ? 10 ? 7OOO 1 ? 10 ? 1 10 4 2 7OOO E 1 ? 9 ? 7OOO 11 ? 19 ? 11 19 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E 2 1 C,D,F,G # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'light scattering' _pdbx_struct_assembly_auth_evidence.details 'UV thermal melting' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B DT 2 "O3'" ? ? ? 1_555 B 05A 3 P ? ? B DT 12 B 05A 13 1_555 ? ? ? ? ? ? ? 1.587 ? ? covale2 covale both ? B 05A 3 "O3'" ? ? ? 1_555 B DT 4 P ? ? B 05A 13 B DT 14 1_555 ? ? ? ? ? ? ? 1.623 ? ? covale3 covale both ? D DT 2 "O3'" ? ? ? 1_555 D 05A 3 P ? ? E DT 12 E 05A 13 1_555 ? ? ? ? ? ? ? 1.623 ? ? covale4 covale both ? D 05A 3 "O3'" ? ? ? 1_555 D DT 4 P ? ? E 05A 13 E DT 14 1_555 ? ? ? ? ? ? ? 1.628 ? ? metalc1 metalc ? ? B 05A 3 O31 ? ? ? 1_555 E MG . MG ? ? B 05A 13 B MG 101 1_555 ? ? ? ? ? ? ? 2.298 ? ? metalc2 metalc ? ? B 05A 3 O31 ? ? ? 1_555 E MG . MG ? ? B 05A 13 B MG 101 6_554 ? ? ? ? ? ? ? 2.748 ? ? hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 B DG 9 N1 ? ? A C 1 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 B DG 9 O6 ? ? A C 1 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 B DG 9 N2 ? ? A C 1 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 2 N1 ? ? ? 1_555 B DT 8 N3 ? ? A A 2 B DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 2 N6 ? ? ? 1_555 B DT 8 O4 ? ? A A 2 B DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A A 3 N1 ? ? ? 1_555 B DT 7 N3 ? ? A A 3 B DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N6 ? ? ? 1_555 B DT 7 O4 ? ? A A 3 B DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 4 N1 ? ? ? 1_555 B DT 6 N3 ? ? A A 4 B DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A A 4 N6 ? ? ? 1_555 B DT 6 O4 ? ? A A 4 B DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 5 N1 ? ? ? 1_555 B DC 5 N3 ? ? A G 5 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 5 N2 ? ? ? 1_555 B DC 5 O2 ? ? A G 5 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 5 O6 ? ? ? 1_555 B DC 5 N4 ? ? A G 5 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 5 N3 ? ? ? 1_555 C G 10 N2 ? ? A G 5 D G 10 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog14 hydrog ? ? A G 5 N2 ? ? ? 1_555 D DC 1 O2 ? ? A G 5 E DC 11 1_555 ? ? ? ? ? ? 'G-DC PAIR' ? ? ? hydrog15 hydrog ? ? A A 6 N1 ? ? ? 1_555 B DT 4 N3 ? ? A A 6 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 6 N6 ? ? ? 1_555 B DT 4 O4 ? ? A A 6 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A A 9 N1 ? ? ? 1_555 B DT 2 N3 ? ? A A 9 B DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A A 9 N6 ? ? ? 1_555 B DT 2 O4 ? ? A A 9 B DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 10 N1 ? ? ? 1_555 B DC 1 N3 ? ? A G 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 10 N2 ? ? ? 1_555 B DC 1 O2 ? ? A G 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 10 O6 ? ? ? 1_555 B DC 1 N4 ? ? A G 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C C 1 N3 ? ? ? 1_555 D DG 9 N1 ? ? D C 1 E DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C C 1 N4 ? ? ? 1_555 D DG 9 O6 ? ? D C 1 E DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C C 1 O2 ? ? ? 1_555 D DG 9 N2 ? ? D C 1 E DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C A 2 N1 ? ? ? 1_555 D DT 8 N3 ? ? D A 2 E DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C A 2 N6 ? ? ? 1_555 D DT 8 O4 ? ? D A 2 E DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C A 3 N1 ? ? ? 1_555 D DT 7 N3 ? ? D A 3 E DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C A 3 N6 ? ? ? 1_555 D DT 7 O4 ? ? D A 3 E DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C A 4 N1 ? ? ? 1_555 D DT 6 N3 ? ? D A 4 E DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C A 4 N6 ? ? ? 1_555 D DT 6 O4 ? ? D A 4 E DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C G 5 N1 ? ? ? 1_555 D DC 5 N3 ? ? D G 5 E DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C G 5 N2 ? ? ? 1_555 D DC 5 O2 ? ? D G 5 E DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C G 5 O6 ? ? ? 1_555 D DC 5 N4 ? ? D G 5 E DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C A 6 N1 ? ? ? 1_555 D DT 4 N3 ? ? D A 6 E DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C A 6 N6 ? ? ? 1_555 D DT 4 O4 ? ? D A 6 E DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C A 9 N1 ? ? ? 1_555 D DT 2 N3 ? ? D A 9 E DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C A 9 N6 ? ? ? 1_555 D DT 2 O4 ? ? D A 9 E DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C G 10 N1 ? ? ? 1_555 D DC 1 N3 ? ? D G 10 E DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C G 10 N2 ? ? ? 1_555 D DC 1 O2 ? ? D G 10 E DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C G 10 O6 ? ? ? 1_555 D DC 1 N4 ? ? D G 10 E DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id O31 _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id B _pdbx_struct_conn_angle.ptnr1_label_comp_id 05A _pdbx_struct_conn_angle.ptnr1_label_seq_id 3 _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id B _pdbx_struct_conn_angle.ptnr1_auth_comp_id 05A _pdbx_struct_conn_angle.ptnr1_auth_seq_id 13 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 1_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id MG _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id E _pdbx_struct_conn_angle.ptnr2_label_comp_id MG _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id B _pdbx_struct_conn_angle.ptnr2_auth_comp_id MG _pdbx_struct_conn_angle.ptnr2_auth_seq_id 101 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 1_555 _pdbx_struct_conn_angle.ptnr3_label_atom_id O31 _pdbx_struct_conn_angle.ptnr3_label_alt_id ? _pdbx_struct_conn_angle.ptnr3_label_asym_id B _pdbx_struct_conn_angle.ptnr3_label_comp_id 05A _pdbx_struct_conn_angle.ptnr3_label_seq_id 3 _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id B _pdbx_struct_conn_angle.ptnr3_auth_comp_id 05A _pdbx_struct_conn_angle.ptnr3_auth_seq_id 13 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 1_555 _pdbx_struct_conn_angle.value 0.0 _pdbx_struct_conn_angle.value_esd ? # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id B _pdbx_struct_special_symmetry.auth_comp_id MG _pdbx_struct_special_symmetry.auth_seq_id 101 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id E _pdbx_struct_special_symmetry.label_comp_id MG _pdbx_struct_special_symmetry.label_seq_id . # _pdbx_entry_details.entry_id 7OOO _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 05A C4 C N N 1 05A "C1'" C N R 2 05A C7 C N N 3 05A C2 C N N 4 05A "C2'" C N R 5 05A C21 C N N 6 05A C11 C N N 7 05A "C3'" C N S 8 05A C41 C N N 9 05A "C4'" C N S 10 05A C8 C N N 11 05A C51 C N N 12 05A "C5'" C N N 13 05A C5 C N N 14 05A C6 C N N 15 05A C61 C N N 16 05A C5A C N N 17 05A C5M C N N 18 05A C1 C N N 19 05A N1 N N N 20 05A N11 N N N 21 05A "N5'" N N N 22 05A N3 N N N 23 05A N31 N N N 24 05A O2 O N N 25 05A O21 O N N 26 05A "O2'" O N N 27 05A "O3'" O N N 28 05A O31 O N N 29 05A O41 O N N 30 05A "O4'" O N N 31 05A O4 O N N 32 05A O1 O N N 33 05A "O5'" O N N 34 05A OP1 O N N 35 05A OP2 O N N 36 05A P P N N 37 05A "C1'1" C N R 38 05A "C2'1" C N R 39 05A "C3'1" C N S 40 05A "C4'1" C N R 41 05A "C5'1" C N N 42 05A "O4'1" O N N 43 05A HC31 H N N 44 05A HC32 H N N 45 05A "H1'" H N N 46 05A H71 H N N 47 05A H72 H N N 48 05A "H2'1" H N N 49 05A H2 H N N 50 05A H3 H N N 51 05A "H3'" H N N 52 05A "H5'1" H N N 53 05A "H5'2" H N N 54 05A H6 H N N 55 05A H61 H N N 56 05A H5A1 H N N 57 05A H5A2 H N N 58 05A H5A3 H N N 59 05A H51 H N N 60 05A H52 H N N 61 05A H53 H N N 62 05A "HN5'" H N N 63 05A HN3 H N N 64 05A H31 H N N 65 05A "HO3'" H N N 66 05A HOP2 H N N 67 05A H1 H N N 68 05A HC21 H N N 69 05A "H3'1" H N N 70 05A HC51 H N N 71 05A HC52 H N N 72 05A OP3 O N N 73 05A HOP3 H N N 74 A OP3 O N N 75 A P P N N 76 A OP1 O N N 77 A OP2 O N N 78 A "O5'" O N N 79 A "C5'" C N N 80 A "C4'" C N R 81 A "O4'" O N N 82 A "C3'" C N S 83 A "O3'" O N N 84 A "C2'" C N R 85 A "O2'" O N N 86 A "C1'" C N R 87 A N9 N Y N 88 A C8 C Y N 89 A N7 N Y N 90 A C5 C Y N 91 A C6 C Y N 92 A N6 N N N 93 A N1 N Y N 94 A C2 C Y N 95 A N3 N Y N 96 A C4 C Y N 97 A HOP3 H N N 98 A HOP2 H N N 99 A "H5'" H N N 100 A "H5''" H N N 101 A "H4'" H N N 102 A "H3'" H N N 103 A "HO3'" H N N 104 A "H2'" H N N 105 A "HO2'" H N N 106 A "H1'" H N N 107 A H8 H N N 108 A H61 H N N 109 A H62 H N N 110 A H2 H N N 111 C OP3 O N N 112 C P P N N 113 C OP1 O N N 114 C OP2 O N N 115 C "O5'" O N N 116 C "C5'" C N N 117 C "C4'" C N R 118 C "O4'" O N N 119 C "C3'" C N S 120 C "O3'" O N N 121 C "C2'" C N R 122 C "O2'" O N N 123 C "C1'" C N R 124 C N1 N N N 125 C C2 C N N 126 C O2 O N N 127 C N3 N N N 128 C C4 C N N 129 C N4 N N N 130 C C5 C N N 131 C C6 C N N 132 C HOP3 H N N 133 C HOP2 H N N 134 C "H5'" H N N 135 C "H5''" H N N 136 C "H4'" H N N 137 C "H3'" H N N 138 C "HO3'" H N N 139 C "H2'" H N N 140 C "HO2'" H N N 141 C "H1'" H N N 142 C H41 H N N 143 C H42 H N N 144 C H5 H N N 145 C H6 H N N 146 DC OP3 O N N 147 DC P P N N 148 DC OP1 O N N 149 DC OP2 O N N 150 DC "O5'" O N N 151 DC "C5'" C N N 152 DC "C4'" C N R 153 DC "O4'" O N N 154 DC "C3'" C N S 155 DC "O3'" O N N 156 DC "C2'" C N N 157 DC "C1'" C N R 158 DC N1 N N N 159 DC C2 C N N 160 DC O2 O N N 161 DC N3 N N N 162 DC C4 C N N 163 DC N4 N N N 164 DC C5 C N N 165 DC C6 C N N 166 DC HOP3 H N N 167 DC HOP2 H N N 168 DC "H5'" H N N 169 DC "H5''" H N N 170 DC "H4'" H N N 171 DC "H3'" H N N 172 DC "HO3'" H N N 173 DC "H2'" H N N 174 DC "H2''" H N N 175 DC "H1'" H N N 176 DC H41 H N N 177 DC H42 H N N 178 DC H5 H N N 179 DC H6 H N N 180 DG OP3 O N N 181 DG P P N N 182 DG OP1 O N N 183 DG OP2 O N N 184 DG "O5'" O N N 185 DG "C5'" C N N 186 DG "C4'" C N R 187 DG "O4'" O N N 188 DG "C3'" C N S 189 DG "O3'" O N N 190 DG "C2'" C N N 191 DG "C1'" C N R 192 DG N9 N Y N 193 DG C8 C Y N 194 DG N7 N Y N 195 DG C5 C Y N 196 DG C6 C N N 197 DG O6 O N N 198 DG N1 N N N 199 DG C2 C N N 200 DG N2 N N N 201 DG N3 N N N 202 DG C4 C Y N 203 DG HOP3 H N N 204 DG HOP2 H N N 205 DG "H5'" H N N 206 DG "H5''" H N N 207 DG "H4'" H N N 208 DG "H3'" H N N 209 DG "HO3'" H N N 210 DG "H2'" H N N 211 DG "H2''" H N N 212 DG "H1'" H N N 213 DG H8 H N N 214 DG H1 H N N 215 DG H21 H N N 216 DG H22 H N N 217 DT OP3 O N N 218 DT P P N N 219 DT OP1 O N N 220 DT OP2 O N N 221 DT "O5'" O N N 222 DT "C5'" C N N 223 DT "C4'" C N R 224 DT "O4'" O N N 225 DT "C3'" C N S 226 DT "O3'" O N N 227 DT "C2'" C N N 228 DT "C1'" C N R 229 DT N1 N N N 230 DT C2 C N N 231 DT O2 O N N 232 DT N3 N N N 233 DT C4 C N N 234 DT O4 O N N 235 DT C5 C N N 236 DT C7 C N N 237 DT C6 C N N 238 DT HOP3 H N N 239 DT HOP2 H N N 240 DT "H5'" H N N 241 DT "H5''" H N N 242 DT "H4'" H N N 243 DT "H3'" H N N 244 DT "HO3'" H N N 245 DT "H2'" H N N 246 DT "H2''" H N N 247 DT "H1'" H N N 248 DT H3 H N N 249 DT H71 H N N 250 DT H72 H N N 251 DT H73 H N N 252 DT H6 H N N 253 G OP3 O N N 254 G P P N N 255 G OP1 O N N 256 G OP2 O N N 257 G "O5'" O N N 258 G "C5'" C N N 259 G "C4'" C N R 260 G "O4'" O N N 261 G "C3'" C N S 262 G "O3'" O N N 263 G "C2'" C N R 264 G "O2'" O N N 265 G "C1'" C N R 266 G N9 N Y N 267 G C8 C Y N 268 G N7 N Y N 269 G C5 C Y N 270 G C6 C N N 271 G O6 O N N 272 G N1 N N N 273 G C2 C N N 274 G N2 N N N 275 G N3 N N N 276 G C4 C Y N 277 G HOP3 H N N 278 G HOP2 H N N 279 G "H5'" H N N 280 G "H5''" H N N 281 G "H4'" H N N 282 G "H3'" H N N 283 G "HO3'" H N N 284 G "H2'" H N N 285 G "HO2'" H N N 286 G "H1'" H N N 287 G H8 H N N 288 G H1 H N N 289 G H21 H N N 290 G H22 H N N 291 HOH O O N N 292 HOH H1 H N N 293 HOH H2 H N N 294 MG MG MG N N 295 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 05A O41 C41 doub N N 1 05A C41 N31 sing N N 2 05A C41 C51 sing N N 3 05A C5A C51 sing N N 4 05A N31 C21 sing N N 5 05A C51 C61 doub N N 6 05A C21 O21 doub N N 7 05A C21 N11 sing N N 8 05A O4 C8 doub N N 9 05A C61 N11 sing N N 10 05A N11 "C1'1" sing N N 11 05A N3 C8 sing N N 12 05A N3 C2 sing N N 13 05A C8 C5 sing N N 14 05A O2 C2 doub N N 15 05A "C1'1" "O4'1" sing N N 16 05A "C1'1" "C2'1" sing N N 17 05A C2 N1 sing N N 18 05A "O4'1" "C4'1" sing N N 19 05A C5 C5M sing N N 20 05A C5 C6 doub N N 21 05A OP2 P sing N N 22 05A N1 C6 sing N N 23 05A N1 "C1'" sing N N 24 05A P "O5'" sing N N 25 05A P OP1 doub N N 26 05A "O5'" "C5'1" sing N N 27 05A "C2'1" "O2'" sing N N 28 05A "C2'1" "C3'1" sing N N 29 05A "C4'1" C4 sing N N 30 05A "C4'1" "C5'1" sing N N 31 05A "C4'1" "C3'1" sing N N 32 05A "C1'" "O4'" sing N N 33 05A "C1'" "C2'" sing N N 34 05A "O2'" C4 sing N N 35 05A "C3'1" C11 sing N N 36 05A "O4'" "C4'" sing N N 37 05A "C2'" O31 sing N N 38 05A "C2'" "C3'" sing N N 39 05A O31 C7 sing N N 40 05A C11 C1 sing N N 41 05A O1 C1 doub N N 42 05A "C4'" "C3'" sing N N 43 05A "C4'" C7 sing N N 44 05A "C4'" "C5'" sing N N 45 05A "C3'" "O3'" sing N N 46 05A C1 "N5'" sing N N 47 05A "N5'" "C5'" sing N N 48 05A C4 HC31 sing N N 49 05A C4 HC32 sing N N 50 05A "C1'" "H1'" sing N N 51 05A C7 H71 sing N N 52 05A C7 H72 sing N N 53 05A "C2'" "H2'1" sing N N 54 05A C11 H2 sing N N 55 05A C11 H3 sing N N 56 05A "C3'" "H3'" sing N N 57 05A "C5'" "H5'1" sing N N 58 05A "C5'" "H5'2" sing N N 59 05A C6 H6 sing N N 60 05A C61 H61 sing N N 61 05A C5A H5A1 sing N N 62 05A C5A H5A2 sing N N 63 05A C5A H5A3 sing N N 64 05A C5M H51 sing N N 65 05A C5M H52 sing N N 66 05A C5M H53 sing N N 67 05A "N5'" "HN5'" sing N N 68 05A N3 HN3 sing N N 69 05A N31 H31 sing N N 70 05A "O3'" "HO3'" sing N N 71 05A OP2 HOP2 sing N N 72 05A "C1'1" H1 sing N N 73 05A "C2'1" HC21 sing N N 74 05A "C3'1" "H3'1" sing N N 75 05A "C5'1" HC51 sing N N 76 05A "C5'1" HC52 sing N N 77 05A P OP3 sing N N 78 05A OP3 HOP3 sing N N 79 A OP3 P sing N N 80 A OP3 HOP3 sing N N 81 A P OP1 doub N N 82 A P OP2 sing N N 83 A P "O5'" sing N N 84 A OP2 HOP2 sing N N 85 A "O5'" "C5'" sing N N 86 A "C5'" "C4'" sing N N 87 A "C5'" "H5'" sing N N 88 A "C5'" "H5''" sing N N 89 A "C4'" "O4'" sing N N 90 A "C4'" "C3'" sing N N 91 A "C4'" "H4'" sing N N 92 A "O4'" "C1'" sing N N 93 A "C3'" "O3'" sing N N 94 A "C3'" "C2'" sing N N 95 A "C3'" "H3'" sing N N 96 A "O3'" "HO3'" sing N N 97 A "C2'" "O2'" sing N N 98 A "C2'" "C1'" sing N N 99 A "C2'" "H2'" sing N N 100 A "O2'" "HO2'" sing N N 101 A "C1'" N9 sing N N 102 A "C1'" "H1'" sing N N 103 A N9 C8 sing Y N 104 A N9 C4 sing Y N 105 A C8 N7 doub Y N 106 A C8 H8 sing N N 107 A N7 C5 sing Y N 108 A C5 C6 sing Y N 109 A C5 C4 doub Y N 110 A C6 N6 sing N N 111 A C6 N1 doub Y N 112 A N6 H61 sing N N 113 A N6 H62 sing N N 114 A N1 C2 sing Y N 115 A C2 N3 doub Y N 116 A C2 H2 sing N N 117 A N3 C4 sing Y N 118 C OP3 P sing N N 119 C OP3 HOP3 sing N N 120 C P OP1 doub N N 121 C P OP2 sing N N 122 C P "O5'" sing N N 123 C OP2 HOP2 sing N N 124 C "O5'" "C5'" sing N N 125 C "C5'" "C4'" sing N N 126 C "C5'" "H5'" sing N N 127 C "C5'" "H5''" sing N N 128 C "C4'" "O4'" sing N N 129 C "C4'" "C3'" sing N N 130 C "C4'" "H4'" sing N N 131 C "O4'" "C1'" sing N N 132 C "C3'" "O3'" sing N N 133 C "C3'" "C2'" sing N N 134 C "C3'" "H3'" sing N N 135 C "O3'" "HO3'" sing N N 136 C "C2'" "O2'" sing N N 137 C "C2'" "C1'" sing N N 138 C "C2'" "H2'" sing N N 139 C "O2'" "HO2'" sing N N 140 C "C1'" N1 sing N N 141 C "C1'" "H1'" sing N N 142 C N1 C2 sing N N 143 C N1 C6 sing N N 144 C C2 O2 doub N N 145 C C2 N3 sing N N 146 C N3 C4 doub N N 147 C C4 N4 sing N N 148 C C4 C5 sing N N 149 C N4 H41 sing N N 150 C N4 H42 sing N N 151 C C5 C6 doub N N 152 C C5 H5 sing N N 153 C C6 H6 sing N N 154 DC OP3 P sing N N 155 DC OP3 HOP3 sing N N 156 DC P OP1 doub N N 157 DC P OP2 sing N N 158 DC P "O5'" sing N N 159 DC OP2 HOP2 sing N N 160 DC "O5'" "C5'" sing N N 161 DC "C5'" "C4'" sing N N 162 DC "C5'" "H5'" sing N N 163 DC "C5'" "H5''" sing N N 164 DC "C4'" "O4'" sing N N 165 DC "C4'" "C3'" sing N N 166 DC "C4'" "H4'" sing N N 167 DC "O4'" "C1'" sing N N 168 DC "C3'" "O3'" sing N N 169 DC "C3'" "C2'" sing N N 170 DC "C3'" "H3'" sing N N 171 DC "O3'" "HO3'" sing N N 172 DC "C2'" "C1'" sing N N 173 DC "C2'" "H2'" sing N N 174 DC "C2'" "H2''" sing N N 175 DC "C1'" N1 sing N N 176 DC "C1'" "H1'" sing N N 177 DC N1 C2 sing N N 178 DC N1 C6 sing N N 179 DC C2 O2 doub N N 180 DC C2 N3 sing N N 181 DC N3 C4 doub N N 182 DC C4 N4 sing N N 183 DC C4 C5 sing N N 184 DC N4 H41 sing N N 185 DC N4 H42 sing N N 186 DC C5 C6 doub N N 187 DC C5 H5 sing N N 188 DC C6 H6 sing N N 189 DG OP3 P sing N N 190 DG OP3 HOP3 sing N N 191 DG P OP1 doub N N 192 DG P OP2 sing N N 193 DG P "O5'" sing N N 194 DG OP2 HOP2 sing N N 195 DG "O5'" "C5'" sing N N 196 DG "C5'" "C4'" sing N N 197 DG "C5'" "H5'" sing N N 198 DG "C5'" "H5''" sing N N 199 DG "C4'" "O4'" sing N N 200 DG "C4'" "C3'" sing N N 201 DG "C4'" "H4'" sing N N 202 DG "O4'" "C1'" sing N N 203 DG "C3'" "O3'" sing N N 204 DG "C3'" "C2'" sing N N 205 DG "C3'" "H3'" sing N N 206 DG "O3'" "HO3'" sing N N 207 DG "C2'" "C1'" sing N N 208 DG "C2'" "H2'" sing N N 209 DG "C2'" "H2''" sing N N 210 DG "C1'" N9 sing N N 211 DG "C1'" "H1'" sing N N 212 DG N9 C8 sing Y N 213 DG N9 C4 sing Y N 214 DG C8 N7 doub Y N 215 DG C8 H8 sing N N 216 DG N7 C5 sing Y N 217 DG C5 C6 sing N N 218 DG C5 C4 doub Y N 219 DG C6 O6 doub N N 220 DG C6 N1 sing N N 221 DG N1 C2 sing N N 222 DG N1 H1 sing N N 223 DG C2 N2 sing N N 224 DG C2 N3 doub N N 225 DG N2 H21 sing N N 226 DG N2 H22 sing N N 227 DG N3 C4 sing N N 228 DT OP3 P sing N N 229 DT OP3 HOP3 sing N N 230 DT P OP1 doub N N 231 DT P OP2 sing N N 232 DT P "O5'" sing N N 233 DT OP2 HOP2 sing N N 234 DT "O5'" "C5'" sing N N 235 DT "C5'" "C4'" sing N N 236 DT "C5'" "H5'" sing N N 237 DT "C5'" "H5''" sing N N 238 DT "C4'" "O4'" sing N N 239 DT "C4'" "C3'" sing N N 240 DT "C4'" "H4'" sing N N 241 DT "O4'" "C1'" sing N N 242 DT "C3'" "O3'" sing N N 243 DT "C3'" "C2'" sing N N 244 DT "C3'" "H3'" sing N N 245 DT "O3'" "HO3'" sing N N 246 DT "C2'" "C1'" sing N N 247 DT "C2'" "H2'" sing N N 248 DT "C2'" "H2''" sing N N 249 DT "C1'" N1 sing N N 250 DT "C1'" "H1'" sing N N 251 DT N1 C2 sing N N 252 DT N1 C6 sing N N 253 DT C2 O2 doub N N 254 DT C2 N3 sing N N 255 DT N3 C4 sing N N 256 DT N3 H3 sing N N 257 DT C4 O4 doub N N 258 DT C4 C5 sing N N 259 DT C5 C7 sing N N 260 DT C5 C6 doub N N 261 DT C7 H71 sing N N 262 DT C7 H72 sing N N 263 DT C7 H73 sing N N 264 DT C6 H6 sing N N 265 G OP3 P sing N N 266 G OP3 HOP3 sing N N 267 G P OP1 doub N N 268 G P OP2 sing N N 269 G P "O5'" sing N N 270 G OP2 HOP2 sing N N 271 G "O5'" "C5'" sing N N 272 G "C5'" "C4'" sing N N 273 G "C5'" "H5'" sing N N 274 G "C5'" "H5''" sing N N 275 G "C4'" "O4'" sing N N 276 G "C4'" "C3'" sing N N 277 G "C4'" "H4'" sing N N 278 G "O4'" "C1'" sing N N 279 G "C3'" "O3'" sing N N 280 G "C3'" "C2'" sing N N 281 G "C3'" "H3'" sing N N 282 G "O3'" "HO3'" sing N N 283 G "C2'" "O2'" sing N N 284 G "C2'" "C1'" sing N N 285 G "C2'" "H2'" sing N N 286 G "O2'" "HO2'" sing N N 287 G "C1'" N9 sing N N 288 G "C1'" "H1'" sing N N 289 G N9 C8 sing Y N 290 G N9 C4 sing Y N 291 G C8 N7 doub Y N 292 G C8 H8 sing N N 293 G N7 C5 sing Y N 294 G C5 C6 sing N N 295 G C5 C4 doub Y N 296 G C6 O6 doub N N 297 G C6 N1 sing N N 298 G N1 C2 sing N N 299 G N1 H1 sing N N 300 G C2 N2 sing N N 301 G C2 N3 doub N N 302 G N2 H21 sing N N 303 G N2 H22 sing N N 304 G N3 C4 sing N N 305 HOH O H1 sing N N 306 HOH O H2 sing N N 307 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 7OOO 'double helix' 7OOO 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 B DG 9 1_555 -0.278 0.010 -0.524 17.557 -24.471 7.344 1 A_C1:DG19_B A 1 ? B 19 ? 19 1 1 A A 2 1_555 B DT 8 1_555 -0.123 -0.221 -0.382 -10.816 -13.175 4.148 2 A_A2:DT18_B A 2 ? B 18 ? 20 1 1 A A 3 1_555 B DT 7 1_555 -0.110 -0.028 -0.061 -2.983 -17.838 5.589 3 A_A3:DT17_B A 3 ? B 17 ? 20 1 1 A A 4 1_555 B DT 6 1_555 0.279 0.025 0.006 -4.738 -19.438 9.407 4 A_A4:DT16_B A 4 ? B 16 ? 20 1 1 A G 5 1_555 B DC 5 1_555 -0.375 -0.369 -0.231 -10.331 -0.959 -0.987 5 A_G5:DC15_B A 5 ? B 15 ? 19 1 1 A A 6 1_555 B DT 4 1_555 -0.153 -0.265 -0.271 -9.507 -8.293 0.026 6 A_A6:DT14_B A 6 ? B 14 ? 20 1 1 A A 9 1_555 B DT 2 1_555 -0.351 -0.125 -0.426 5.823 -4.705 4.811 7 A_A9:DT12_B A 9 ? B 12 ? 20 1 1 A G 10 1_555 B DC 1 1_555 0.011 -0.358 -0.203 5.487 -2.263 1.345 8 A_G10:DC11_B A 10 ? B 11 ? 19 1 1 C C 1 1_555 D DG 9 1_555 0.203 -0.041 -0.142 6.645 -16.798 9.740 9 D_C1:DG19_E D 1 ? E 19 ? 19 1 1 C A 2 1_555 D DT 8 1_555 -0.674 -0.141 0.491 -2.172 -26.256 7.229 10 D_A2:DT18_E D 2 ? E 18 ? 20 1 1 C A 3 1_555 D DT 7 1_555 -0.359 -0.101 0.222 -2.322 -12.944 2.905 11 D_A3:DT17_E D 3 ? E 17 ? 20 1 1 C A 4 1_555 D DT 6 1_555 -0.235 -0.015 0.023 -4.790 -18.071 8.727 12 D_A4:DT16_E D 4 ? E 16 ? 20 1 1 C G 5 1_555 D DC 5 1_555 -1.117 -0.156 -0.266 -12.171 -8.121 4.742 13 D_G5:DC15_E D 5 ? E 15 ? 19 1 1 C A 6 1_555 D DT 4 1_555 0.069 -0.049 -0.199 -6.239 -5.605 0.352 14 D_A6:DT14_E D 6 ? E 14 ? 20 1 1 C A 9 1_555 D DT 2 1_555 -0.070 -0.221 -0.290 4.871 -6.219 0.613 15 D_A9:DT12_E D 9 ? E 12 ? 20 1 1 C G 10 1_555 D DC 1 1_555 -0.522 -0.292 0.122 7.915 -4.298 4.091 16 D_G10:DC11_E D 10 ? E 11 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 B DG 9 1_555 A A 2 1_555 B DT 8 1_555 0.288 -0.944 3.940 2.531 17.252 35.317 -3.771 -0.082 3.174 26.534 -3.893 39.263 1 AA_C1A2:DT18DG19_BB A 1 ? B 19 ? A 2 ? B 18 ? 1 A A 2 1_555 B DT 8 1_555 A A 3 1_555 B DT 7 1_555 0.424 -0.793 3.113 -0.608 11.257 31.557 -3.071 -0.827 2.673 19.920 1.077 33.462 2 AA_A2A3:DT17DT18_BB A 2 ? B 18 ? A 3 ? B 17 ? 1 A A 3 1_555 B DT 7 1_555 A A 4 1_555 B DT 6 1_555 0.501 -1.127 3.364 0.646 5.398 31.770 -2.994 -0.788 3.144 9.770 -1.169 32.220 3 AA_A3A4:DT16DT17_BB A 3 ? B 17 ? A 4 ? B 16 ? 1 A A 4 1_555 B DT 6 1_555 A G 5 1_555 B DC 5 1_555 -1.390 -1.684 3.326 -4.878 14.564 31.120 -4.941 1.628 2.499 25.306 8.476 34.620 4 AA_A4G5:DC15DT16_BB A 4 ? B 16 ? A 5 ? B 15 ? 1 A G 5 1_555 B DC 5 1_555 A A 6 1_555 B DT 4 1_555 1.003 -1.698 3.334 2.716 12.675 30.794 -4.928 -1.325 2.535 22.650 -4.853 33.350 5 AA_G5A6:DT14DC15_BB A 5 ? B 15 ? A 6 ? B 14 ? 1 A A 9 1_555 B DT 2 1_555 A G 10 1_555 B DC 1 1_555 0.096 -1.769 3.571 -1.641 2.714 30.083 -3.976 -0.538 3.392 5.210 3.151 30.246 6 AA_A9G10:DC11DT12_BB A 9 ? B 12 ? A 10 ? B 11 ? 1 C C 1 1_555 D DG 9 1_555 C A 2 1_555 D DT 8 1_555 0.337 -1.350 3.157 -1.717 16.412 31.931 -4.245 -0.763 2.204 27.646 2.892 35.844 7 DD_C1A2:DT18DG19_EE D 1 ? E 19 ? D 2 ? E 18 ? 1 C A 2 1_555 D DT 8 1_555 C A 3 1_555 D DT 7 1_555 0.086 -1.355 3.220 0.549 5.001 30.417 -3.478 -0.060 2.966 9.451 -1.038 30.820 8 DD_A2A3:DT17DT18_EE D 2 ? E 18 ? D 3 ? E 17 ? 1 C A 3 1_555 D DT 7 1_555 C A 4 1_555 D DT 6 1_555 0.577 -1.458 3.382 3.649 4.627 30.610 -3.607 -0.371 3.179 8.664 -6.832 31.159 9 DD_A3A4:DT16DT17_EE D 3 ? E 17 ? D 4 ? E 16 ? 1 C A 4 1_555 D DT 6 1_555 C G 5 1_555 D DC 5 1_555 -0.974 -1.619 3.301 -4.312 14.158 30.760 -4.855 1.025 2.453 24.959 7.602 34.058 10 DD_A4G5:DC15DT16_EE D 4 ? E 16 ? D 5 ? E 15 ? 1 C G 5 1_555 D DC 5 1_555 C A 6 1_555 D DT 4 1_555 0.675 -1.611 3.128 1.177 11.544 32.512 -4.297 -0.978 2.453 19.847 -2.024 34.468 11 DD_G5A6:DT14DC15_EE D 5 ? E 15 ? D 6 ? E 14 ? 1 C A 9 1_555 D DT 2 1_555 C G 10 1_555 D DC 1 1_555 0.710 -2.190 3.251 -2.710 2.952 25.662 -5.641 -2.285 2.896 6.594 6.055 25.968 12 DD_A9G10:DC11DT12_EE D 9 ? E 12 ? D 10 ? E 11 ? # _pdbx_audit_support.funding_organization 'Biotechnology and Biological Sciences Research Council (BBSRC)' _pdbx_audit_support.country 'United Kingdom' _pdbx_audit_support.grant_number BB/S018794/1 _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id 05A _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id 05A _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 7NRP _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 7OOO _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.020346 _atom_sites.fract_transf_matrix[1][2] 0.011747 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023493 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010994 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C MG N O P # loop_