HEADER DNA BINDING PROTEIN 28-MAY-21 7OOT TITLE X-RAY STRUCTURE OF INTERFERON REGULATORY FACTOR 4 DNA BINDING DOMAIN TITLE 2 BOUND TO AN INTERFERON-STIMULATED RESPONSE ELEMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERFERON REGULATORY FACTOR 4; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: IRF-4,LYMPHOCYTE-SPECIFIC INTERFERON REGULATORY FACTOR, COMPND 5 LSIRF,MULTIPLE MYELOMA ONCOGENE 1,NF-EM5; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(P*TP*CP*AP*AP*CP*TP*GP*AP*AP*AP*CP*CP*GP*AP*GP*AP*AP*AP*GP*C)-3'); COMPND 10 CHAIN: C; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'- COMPND 14 D(P*AP*GP*CP*TP*TP*TP*CP*TP*CP*GP*GP*TP*TP*TP*CP*AP*GP*TP*TP*G)-3'); COMPND 15 CHAIN: E; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IRF4, MUM1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PCDFDUET; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_TAXID: 10090; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 16 ORGANISM_TAXID: 10090 KEYWDS INTERFERON REGULATORY FACTORS, TRANSCRIPTION REGULATION, PROTEIN-DNA KEYWDS 2 INTERACTION, TRANSCRIPTION, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.AGNARELLI,K.EL OMARI,A.O.ALT,E.J.MANCINI REVDAT 2 31-JAN-24 7OOT 1 REMARK REVDAT 1 08-JUN-22 7OOT 0 JRNL AUTH A.AGNARELLI,K.EL OMARI,A.O.ALT,E.J.MANCINI JRNL TITL X-RAY STRUCTURE OF INTERFERON REGULATORY FACTOR 4 DNA JRNL TITL 2 BINDING DOMAIN BOUND TO INTERFERON-STIMULATED RESPONSE JRNL TITL 3 ELEMENT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 23133 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.820 REMARK 3 FREE R VALUE TEST SET COUNT : 1116 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.2700 - 4.5000 1.00 2938 146 0.1562 0.1865 REMARK 3 2 4.5000 - 3.5700 1.00 2771 169 0.1593 0.2083 REMARK 3 3 3.5700 - 3.1200 0.98 2715 140 0.2079 0.2431 REMARK 3 4 3.1200 - 2.8300 1.00 2736 150 0.2554 0.3006 REMARK 3 5 2.8300 - 2.6300 1.00 2752 138 0.2702 0.3227 REMARK 3 6 2.6300 - 2.4800 1.00 2749 122 0.2761 0.3042 REMARK 3 7 2.4800 - 2.3500 1.00 2745 117 0.2899 0.3384 REMARK 3 8 2.3500 - 2.2500 0.97 2611 134 0.3088 0.3141 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.039 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2828 REMARK 3 ANGLE : 1.042 3990 REMARK 3 CHIRALITY : 0.052 412 REMARK 3 PLANARITY : 0.008 374 REMARK 3 DIHEDRAL : 29.024 1124 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.0931 -6.7324 16.7250 REMARK 3 T TENSOR REMARK 3 T11: 0.3716 T22: 0.9086 REMARK 3 T33: 1.2657 T12: 0.0901 REMARK 3 T13: -0.0826 T23: 0.0618 REMARK 3 L TENSOR REMARK 3 L11: 0.4342 L22: 1.5676 REMARK 3 L33: 0.8619 L12: -0.8041 REMARK 3 L13: -0.2742 L23: 0.7309 REMARK 3 S TENSOR REMARK 3 S11: -0.3516 S12: 0.9864 S13: 0.4696 REMARK 3 S21: 0.1233 S22: -0.2342 S23: 1.0033 REMARK 3 S31: -0.3631 S32: -0.7924 S33: 0.5118 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 6 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.6855 -9.6145 10.7395 REMARK 3 T TENSOR REMARK 3 T11: 0.3892 T22: 0.4837 REMARK 3 T33: 0.5857 T12: -0.0995 REMARK 3 T13: -0.0448 T23: 0.0368 REMARK 3 L TENSOR REMARK 3 L11: 0.7977 L22: 2.5348 REMARK 3 L33: 1.6510 L12: 1.3685 REMARK 3 L13: -0.1925 L23: -0.3493 REMARK 3 S TENSOR REMARK 3 S11: 0.3365 S12: -0.1119 S13: -0.3286 REMARK 3 S21: 0.1145 S22: -0.1741 S23: -0.6559 REMARK 3 S31: 0.0844 S32: 0.0553 S33: -0.0035 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 22 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.4207 -18.8875 29.5596 REMARK 3 T TENSOR REMARK 3 T11: 0.4555 T22: 0.5661 REMARK 3 T33: 0.4584 T12: -0.1770 REMARK 3 T13: 0.0446 T23: 0.0201 REMARK 3 L TENSOR REMARK 3 L11: 8.9556 L22: 2.7554 REMARK 3 L33: 2.5265 L12: -3.6976 REMARK 3 L13: 4.1579 L23: -1.8970 REMARK 3 S TENSOR REMARK 3 S11: 0.0486 S12: -1.1318 S13: -0.4924 REMARK 3 S21: 0.3520 S22: 0.3068 S23: 1.1486 REMARK 3 S31: 0.5172 S32: -1.0850 S33: -0.0661 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 35 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0406 -16.7505 35.7647 REMARK 3 T TENSOR REMARK 3 T11: 0.5589 T22: 0.6270 REMARK 3 T33: 0.4155 T12: -0.1460 REMARK 3 T13: 0.0096 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 4.5284 L22: 4.8788 REMARK 3 L33: 9.2326 L12: 0.2335 REMARK 3 L13: -0.3482 L23: 2.8334 REMARK 3 S TENSOR REMARK 3 S11: 0.1850 S12: -1.2419 S13: 0.2659 REMARK 3 S21: 1.1006 S22: -0.1061 S23: 0.7037 REMARK 3 S31: 0.0958 S32: -0.1889 S33: 0.1251 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 54 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.4701 -21.8919 21.7962 REMARK 3 T TENSOR REMARK 3 T11: 0.5831 T22: 0.5258 REMARK 3 T33: 0.6447 T12: 0.0313 REMARK 3 T13: 0.0002 T23: 0.1425 REMARK 3 L TENSOR REMARK 3 L11: 9.5802 L22: 7.4286 REMARK 3 L33: 6.0140 L12: -2.1976 REMARK 3 L13: -3.8181 L23: 3.9207 REMARK 3 S TENSOR REMARK 3 S11: -0.1082 S12: -0.9407 S13: -1.2253 REMARK 3 S21: 0.5579 S22: -0.3881 S23: -1.1020 REMARK 3 S31: 0.9733 S32: 0.7516 S33: -0.0970 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.8786 -20.5031 16.3863 REMARK 3 T TENSOR REMARK 3 T11: 0.4580 T22: 0.4674 REMARK 3 T33: 0.3757 T12: -0.1316 REMARK 3 T13: 0.0003 T23: 0.0208 REMARK 3 L TENSOR REMARK 3 L11: 2.9577 L22: 2.9423 REMARK 3 L33: 2.3166 L12: -0.2804 REMARK 3 L13: -0.5800 L23: -0.0867 REMARK 3 S TENSOR REMARK 3 S11: -0.3094 S12: 0.1711 S13: -0.1401 REMARK 3 S21: -0.6489 S22: 0.0837 S23: 0.1270 REMARK 3 S31: 0.2242 S32: -0.1666 S33: -0.0339 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 104 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1802 -8.8479 30.2364 REMARK 3 T TENSOR REMARK 3 T11: 0.4812 T22: 0.4349 REMARK 3 T33: 0.4702 T12: -0.0781 REMARK 3 T13: -0.0474 T23: -0.0345 REMARK 3 L TENSOR REMARK 3 L11: 8.5893 L22: 3.6252 REMARK 3 L33: 4.3862 L12: -0.2894 REMARK 3 L13: 2.0061 L23: 0.8692 REMARK 3 S TENSOR REMARK 3 S11: 0.0225 S12: -0.8053 S13: 0.8634 REMARK 3 S21: 0.3227 S22: -0.0617 S23: 0.0566 REMARK 3 S31: -0.0750 S32: -0.3122 S33: 0.0482 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 128 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.1707 -5.2731 33.5488 REMARK 3 T TENSOR REMARK 3 T11: 0.6001 T22: 1.1706 REMARK 3 T33: 1.1118 T12: 0.2216 REMARK 3 T13: 0.1526 T23: -0.1966 REMARK 3 L TENSOR REMARK 3 L11: 0.8508 L22: 1.3216 REMARK 3 L33: 0.7937 L12: 0.4984 REMARK 3 L13: -0.0277 L23: 0.3007 REMARK 3 S TENSOR REMARK 3 S11: 0.2607 S12: -0.4116 S13: -0.5323 REMARK 3 S21: -0.0380 S22: 1.3018 S23: 1.0789 REMARK 3 S31: -0.1396 S32: 0.2503 S33: -0.8262 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 22 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9661 10.0401 1.0544 REMARK 3 T TENSOR REMARK 3 T11: 0.4804 T22: 0.4336 REMARK 3 T33: 0.4979 T12: 0.0382 REMARK 3 T13: 0.0912 T23: 0.0499 REMARK 3 L TENSOR REMARK 3 L11: 9.0780 L22: 1.9126 REMARK 3 L33: 0.4165 L12: 3.7221 REMARK 3 L13: 0.4538 L23: -0.2054 REMARK 3 S TENSOR REMARK 3 S11: 0.2481 S12: 0.2764 S13: 1.5757 REMARK 3 S21: 0.0301 S22: 0.1695 S23: 1.0824 REMARK 3 S31: -1.0847 S32: -0.3051 S33: -0.0203 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 35 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.8997 11.6648 -5.6834 REMARK 3 T TENSOR REMARK 3 T11: 0.4627 T22: 0.4810 REMARK 3 T33: 0.4935 T12: 0.0009 REMARK 3 T13: 0.1140 T23: 0.0314 REMARK 3 L TENSOR REMARK 3 L11: 6.3610 L22: 3.5579 REMARK 3 L33: 4.5583 L12: -0.3301 REMARK 3 L13: -0.6874 L23: -0.7029 REMARK 3 S TENSOR REMARK 3 S11: 0.2407 S12: 0.5390 S13: 0.5876 REMARK 3 S21: -0.3869 S22: -0.1910 S23: -0.3115 REMARK 3 S31: -0.7457 S32: -0.5332 S33: 0.4125 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 49 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.4836 4.6969 4.6806 REMARK 3 T TENSOR REMARK 3 T11: 0.4368 T22: 0.5033 REMARK 3 T33: 0.5463 T12: -0.0703 REMARK 3 T13: 0.0599 T23: 0.0734 REMARK 3 L TENSOR REMARK 3 L11: 7.6515 L22: 3.0244 REMARK 3 L33: 8.7838 L12: -1.3970 REMARK 3 L13: 6.4063 L23: -0.5380 REMARK 3 S TENSOR REMARK 3 S11: -0.1704 S12: 0.1335 S13: 0.7913 REMARK 3 S21: 0.1915 S22: -0.3022 S23: -0.7736 REMARK 3 S31: -0.4645 S32: 0.2921 S33: -0.0907 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 64 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.7782 9.1808 10.9899 REMARK 3 T TENSOR REMARK 3 T11: 0.5497 T22: 0.4981 REMARK 3 T33: 0.4580 T12: -0.0469 REMARK 3 T13: 0.0448 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 7.9787 L22: 4.2506 REMARK 3 L33: 3.5557 L12: -0.4647 REMARK 3 L13: 1.1440 L23: 1.8761 REMARK 3 S TENSOR REMARK 3 S11: -0.2404 S12: -0.4356 S13: 0.8254 REMARK 3 S21: 0.7064 S22: 0.0717 S23: -0.1576 REMARK 3 S31: -0.5135 S32: 0.5214 S33: -0.1880 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 78 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.6525 2.8733 14.3517 REMARK 3 T TENSOR REMARK 3 T11: 0.5866 T22: 0.5042 REMARK 3 T33: 0.4337 T12: 0.0249 REMARK 3 T13: 0.0220 T23: -0.0274 REMARK 3 L TENSOR REMARK 3 L11: 1.6227 L22: 2.8872 REMARK 3 L33: 2.4822 L12: -0.4180 REMARK 3 L13: 1.1648 L23: -1.1701 REMARK 3 S TENSOR REMARK 3 S11: -0.2867 S12: -0.7356 S13: 0.0868 REMARK 3 S21: 0.7281 S22: -0.0092 S23: 0.0547 REMARK 3 S31: -0.7831 S32: -0.4909 S33: 0.1153 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 104 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.0651 -0.0329 -4.1291 REMARK 3 T TENSOR REMARK 3 T11: 0.5605 T22: 0.4550 REMARK 3 T33: 0.4641 T12: 0.0714 REMARK 3 T13: 0.1198 T23: -0.0243 REMARK 3 L TENSOR REMARK 3 L11: 7.0382 L22: 3.2153 REMARK 3 L33: 3.6978 L12: -0.2423 REMARK 3 L13: -1.6503 L23: -1.2029 REMARK 3 S TENSOR REMARK 3 S11: 0.2468 S12: 0.7828 S13: -0.2219 REMARK 3 S21: -0.2361 S22: -0.4658 S23: -0.2899 REMARK 3 S31: 0.4453 S32: 0.1116 S33: -0.1168 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 128 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.1979 0.6560 -9.0087 REMARK 3 T TENSOR REMARK 3 T11: 0.5139 T22: 1.2606 REMARK 3 T33: 0.7927 T12: -0.1198 REMARK 3 T13: -0.1748 T23: -0.0527 REMARK 3 L TENSOR REMARK 3 L11: 2.4223 L22: 1.1383 REMARK 3 L33: 2.7344 L12: -1.4650 REMARK 3 L13: 1.7885 L23: -1.6277 REMARK 3 S TENSOR REMARK 3 S11: -0.3446 S12: 0.0520 S13: 0.3500 REMARK 3 S21: -0.5724 S22: 0.7091 S23: 1.4200 REMARK 3 S31: -0.5738 S32: -0.2917 S33: -0.4224 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0088 -8.3458 13.0175 REMARK 3 T TENSOR REMARK 3 T11: 0.2912 T22: 0.4023 REMARK 3 T33: 0.5782 T12: -0.0429 REMARK 3 T13: -0.0493 T23: 0.0355 REMARK 3 L TENSOR REMARK 3 L11: 0.8483 L22: 2.6348 REMARK 3 L33: 3.1435 L12: 1.0093 REMARK 3 L13: -1.2938 L23: -0.2316 REMARK 3 S TENSOR REMARK 3 S11: -0.1119 S12: 0.1462 S13: -0.3080 REMARK 3 S21: 0.0285 S22: -0.0252 S23: -0.6391 REMARK 3 S31: 0.0746 S32: 0.3325 S33: -0.0597 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 16 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.3702 -9.3991 9.3255 REMARK 3 T TENSOR REMARK 3 T11: 0.4105 T22: 0.8463 REMARK 3 T33: 0.8737 T12: -0.1321 REMARK 3 T13: -0.2236 T23: 0.2395 REMARK 3 L TENSOR REMARK 3 L11: 0.0240 L22: 3.1091 REMARK 3 L33: 3.4801 L12: 0.1478 REMARK 3 L13: -0.2745 L23: -0.9982 REMARK 3 S TENSOR REMARK 3 S11: -0.0833 S12: -0.2390 S13: -0.0611 REMARK 3 S21: -0.1789 S22: -0.0373 S23: 1.0941 REMARK 3 S31: -0.2345 S32: -0.9034 S33: 0.2097 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 22 through 81 or REMARK 3 resid 83 through 102 or resid 104 through REMARK 3 125 or resid 127 through 132)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 22 through 81 or REMARK 3 resid 83 through 102 or resid 104 through REMARK 3 125 or resid 127 through 132)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7OOT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1292115759. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9688 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23181 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 44.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.11200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.13600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7O56 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS HCL PH 8.5, 30% PEG 4000, REMARK 280 0.2M LITHIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.39000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.26500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.62500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.26500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.39000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.62500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 SER A 8 REMARK 465 ALA A 9 REMARK 465 ALA A 10 REMARK 465 LEU A 11 REMARK 465 GLU A 12 REMARK 465 VAL A 13 REMARK 465 LEU A 14 REMARK 465 PHE A 15 REMARK 465 GLN A 16 REMARK 465 GLY A 17 REMARK 465 PRO A 18 REMARK 465 GLY A 19 REMARK 465 GLY A 20 REMARK 465 ASN A 21 REMARK 465 LYS A 133 REMARK 465 LYS A 134 REMARK 465 GLY A 135 REMARK 465 ALA A 136 REMARK 465 LYS A 137 REMARK 465 GLN A 138 REMARK 465 LEU A 139 REMARK 465 MET B -1 REMARK 465 GLY B 0 REMARK 465 SER B 1 REMARK 465 HIS B 2 REMARK 465 HIS B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 SER B 8 REMARK 465 ALA B 9 REMARK 465 ALA B 10 REMARK 465 LEU B 11 REMARK 465 GLU B 12 REMARK 465 VAL B 13 REMARK 465 LEU B 14 REMARK 465 PHE B 15 REMARK 465 GLN B 16 REMARK 465 GLY B 17 REMARK 465 PRO B 18 REMARK 465 GLY B 19 REMARK 465 GLY B 20 REMARK 465 ASN B 21 REMARK 465 LYS B 133 REMARK 465 LYS B 134 REMARK 465 GLY B 135 REMARK 465 ALA B 136 REMARK 465 LYS B 137 REMARK 465 GLN B 138 REMARK 465 LEU B 139 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT E 14 O3' DT E 14 C3' -0.037 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT C 6 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 120 79.14 -113.60 REMARK 500 ASP B 120 77.03 -112.32 REMARK 500 REMARK 500 REMARK: NULL DBREF 7OOT A 20 139 UNP Q15306 IRF4_HUMAN 20 139 DBREF 7OOT B 20 139 UNP Q15306 IRF4_HUMAN 20 139 DBREF 7OOT C 1 20 PDB 7OOT 7OOT 1 20 DBREF 7OOT E 1 20 PDB 7OOT 7OOT 1 20 SEQADV 7OOT MET A -1 UNP Q15306 INITIATING METHIONINE SEQADV 7OOT GLY A 0 UNP Q15306 EXPRESSION TAG SEQADV 7OOT SER A 1 UNP Q15306 EXPRESSION TAG SEQADV 7OOT HIS A 2 UNP Q15306 EXPRESSION TAG SEQADV 7OOT HIS A 3 UNP Q15306 EXPRESSION TAG SEQADV 7OOT HIS A 4 UNP Q15306 EXPRESSION TAG SEQADV 7OOT HIS A 5 UNP Q15306 EXPRESSION TAG SEQADV 7OOT HIS A 6 UNP Q15306 EXPRESSION TAG SEQADV 7OOT HIS A 7 UNP Q15306 EXPRESSION TAG SEQADV 7OOT SER A 8 UNP Q15306 EXPRESSION TAG SEQADV 7OOT ALA A 9 UNP Q15306 EXPRESSION TAG SEQADV 7OOT ALA A 10 UNP Q15306 EXPRESSION TAG SEQADV 7OOT LEU A 11 UNP Q15306 EXPRESSION TAG SEQADV 7OOT GLU A 12 UNP Q15306 EXPRESSION TAG SEQADV 7OOT VAL A 13 UNP Q15306 EXPRESSION TAG SEQADV 7OOT LEU A 14 UNP Q15306 EXPRESSION TAG SEQADV 7OOT PHE A 15 UNP Q15306 EXPRESSION TAG SEQADV 7OOT GLN A 16 UNP Q15306 EXPRESSION TAG SEQADV 7OOT GLY A 17 UNP Q15306 EXPRESSION TAG SEQADV 7OOT PRO A 18 UNP Q15306 EXPRESSION TAG SEQADV 7OOT GLY A 19 UNP Q15306 EXPRESSION TAG SEQADV 7OOT MET B -1 UNP Q15306 INITIATING METHIONINE SEQADV 7OOT GLY B 0 UNP Q15306 EXPRESSION TAG SEQADV 7OOT SER B 1 UNP Q15306 EXPRESSION TAG SEQADV 7OOT HIS B 2 UNP Q15306 EXPRESSION TAG SEQADV 7OOT HIS B 3 UNP Q15306 EXPRESSION TAG SEQADV 7OOT HIS B 4 UNP Q15306 EXPRESSION TAG SEQADV 7OOT HIS B 5 UNP Q15306 EXPRESSION TAG SEQADV 7OOT HIS B 6 UNP Q15306 EXPRESSION TAG SEQADV 7OOT HIS B 7 UNP Q15306 EXPRESSION TAG SEQADV 7OOT SER B 8 UNP Q15306 EXPRESSION TAG SEQADV 7OOT ALA B 9 UNP Q15306 EXPRESSION TAG SEQADV 7OOT ALA B 10 UNP Q15306 EXPRESSION TAG SEQADV 7OOT LEU B 11 UNP Q15306 EXPRESSION TAG SEQADV 7OOT GLU B 12 UNP Q15306 EXPRESSION TAG SEQADV 7OOT VAL B 13 UNP Q15306 EXPRESSION TAG SEQADV 7OOT LEU B 14 UNP Q15306 EXPRESSION TAG SEQADV 7OOT PHE B 15 UNP Q15306 EXPRESSION TAG SEQADV 7OOT GLN B 16 UNP Q15306 EXPRESSION TAG SEQADV 7OOT GLY B 17 UNP Q15306 EXPRESSION TAG SEQADV 7OOT PRO B 18 UNP Q15306 EXPRESSION TAG SEQADV 7OOT GLY B 19 UNP Q15306 EXPRESSION TAG SEQRES 1 A 141 MET GLY SER HIS HIS HIS HIS HIS HIS SER ALA ALA LEU SEQRES 2 A 141 GLU VAL LEU PHE GLN GLY PRO GLY GLY ASN GLY LYS LEU SEQRES 3 A 141 ARG GLN TRP LEU ILE ASP GLN ILE ASP SER GLY LYS TYR SEQRES 4 A 141 PRO GLY LEU VAL TRP GLU ASN GLU GLU LYS SER ILE PHE SEQRES 5 A 141 ARG ILE PRO TRP LYS HIS ALA GLY LYS GLN ASP TYR ASN SEQRES 6 A 141 ARG GLU GLU ASP ALA ALA LEU PHE LYS ALA TRP ALA LEU SEQRES 7 A 141 PHE LYS GLY LYS PHE ARG GLU GLY ILE ASP LYS PRO ASP SEQRES 8 A 141 PRO PRO THR TRP LYS THR ARG LEU ARG CYS ALA LEU ASN SEQRES 9 A 141 LYS SER ASN ASP PHE GLU GLU LEU VAL GLU ARG SER GLN SEQRES 10 A 141 LEU ASP ILE SER ASP PRO TYR LYS VAL TYR ARG ILE VAL SEQRES 11 A 141 PRO GLU GLY ALA LYS LYS GLY ALA LYS GLN LEU SEQRES 1 B 141 MET GLY SER HIS HIS HIS HIS HIS HIS SER ALA ALA LEU SEQRES 2 B 141 GLU VAL LEU PHE GLN GLY PRO GLY GLY ASN GLY LYS LEU SEQRES 3 B 141 ARG GLN TRP LEU ILE ASP GLN ILE ASP SER GLY LYS TYR SEQRES 4 B 141 PRO GLY LEU VAL TRP GLU ASN GLU GLU LYS SER ILE PHE SEQRES 5 B 141 ARG ILE PRO TRP LYS HIS ALA GLY LYS GLN ASP TYR ASN SEQRES 6 B 141 ARG GLU GLU ASP ALA ALA LEU PHE LYS ALA TRP ALA LEU SEQRES 7 B 141 PHE LYS GLY LYS PHE ARG GLU GLY ILE ASP LYS PRO ASP SEQRES 8 B 141 PRO PRO THR TRP LYS THR ARG LEU ARG CYS ALA LEU ASN SEQRES 9 B 141 LYS SER ASN ASP PHE GLU GLU LEU VAL GLU ARG SER GLN SEQRES 10 B 141 LEU ASP ILE SER ASP PRO TYR LYS VAL TYR ARG ILE VAL SEQRES 11 B 141 PRO GLU GLY ALA LYS LYS GLY ALA LYS GLN LEU SEQRES 1 C 20 DT DC DA DA DC DT DG DA DA DA DC DC DG SEQRES 2 C 20 DA DG DA DA DA DG DC SEQRES 1 E 20 DA DG DC DT DT DT DC DT DC DG DG DT DT SEQRES 2 E 20 DT DC DA DG DT DT DG HET PO4 B 200 5 HETNAM PO4 PHOSPHATE ION FORMUL 5 PO4 O4 P 3- FORMUL 6 HOH *76(H2 O) HELIX 1 AA1 LYS A 23 GLY A 35 1 13 HELIX 2 AA2 ASN A 63 ALA A 68 1 6 HELIX 3 AA3 ALA A 68 LYS A 78 1 11 HELIX 4 AA4 ASP A 89 SER A 104 1 16 HELIX 5 AA5 VAL A 111 SER A 114 5 4 HELIX 6 AA6 LYS B 23 GLY B 35 1 13 HELIX 7 AA7 ASN B 63 ALA B 68 1 6 HELIX 8 AA8 ALA B 68 LYS B 78 1 11 HELIX 9 AA9 ASP B 89 SER B 104 1 16 SHEET 1 AA1 4 VAL A 41 TRP A 42 0 SHEET 2 AA1 4 ILE A 49 PRO A 53 -1 O ARG A 51 N VAL A 41 SHEET 3 AA1 4 TYR A 122 ILE A 127 -1 O TYR A 125 N PHE A 50 SHEET 4 AA1 4 PHE A 107 GLU A 109 -1 N GLU A 108 O ARG A 126 SHEET 1 AA2 4 VAL B 41 TRP B 42 0 SHEET 2 AA2 4 ILE B 49 PRO B 53 -1 O ARG B 51 N VAL B 41 SHEET 3 AA2 4 TYR B 122 ILE B 127 -1 O TYR B 125 N PHE B 50 SHEET 4 AA2 4 PHE B 107 GLU B 109 -1 N GLU B 108 O ARG B 126 CRYST1 64.780 83.250 88.530 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015437 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012012 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011296 0.00000 MTRIX1 1 0.991519 -0.097903 0.085475 16.89570 1 MTRIX2 1 -0.127241 -0.865215 0.484988 -22.27579 1 MTRIX3 1 0.026472 -0.491750 -0.870334 17.80988 1