HEADER RNA 01-JUN-21 7OPK TITLE CRYSTAL STRUCTURE OF C. THERMOPHILUM XRN2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-3' EXORIBONUCLEASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.1.13.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHAETOMIUM THERMOPHILUM (STRAIN DSM 1495 / CBS SOURCE 3 144.50 / IMI 039719); SOURCE 4 ORGANISM_TAXID: 759272; SOURCE 5 STRAIN: DSM 1495 / CBS 144.50 / IMI 039719; SOURCE 6 GENE: CTHT_0008830; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS RNA, DEGRADATION, METABOLISM, HYDROLYSIS EXPDTA X-RAY DIFFRACTION AUTHOR J.H.OVERBECK,R.SPRANGERS REVDAT 4 31-JAN-24 7OPK 1 REMARK REVDAT 3 05-OCT-22 7OPK 1 JRNL REVDAT 2 07-SEP-22 7OPK 1 TITLE JRNL REVDAT 1 06-JUL-22 7OPK 0 JRNL AUTH J.H.OVERBECK,D.STELZIG,A.L.FUCHS,J.P.WURM,R.SPRANGERS JRNL TITL OBSERVATION OF CONFORMATIONAL CHANGES THAT UNDERLIE THE JRNL TITL 2 CATALYTIC CYCLE OF XRN2. JRNL REF NAT.CHEM.BIOL. V. 18 1152 2022 JRNL REFN ESSN 1552-4469 JRNL PMID 36008487 JRNL DOI 10.1038/S41589-022-01111-6 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874+SVN REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 31599 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.730 REMARK 3 FREE R VALUE TEST SET COUNT : 1495 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.6900 - 6.6700 1.00 2860 126 0.1638 0.1789 REMARK 3 2 6.6600 - 5.2900 1.00 2772 126 0.1700 0.2113 REMARK 3 3 5.2900 - 4.6300 1.00 2756 124 0.1575 0.1671 REMARK 3 4 4.6200 - 4.2000 1.00 2738 160 0.1474 0.1946 REMARK 3 5 4.2000 - 3.9000 1.00 2699 134 0.1629 0.2260 REMARK 3 6 3.9000 - 3.6700 1.00 2763 115 0.1737 0.2084 REMARK 3 7 3.6700 - 3.4900 1.00 2732 137 0.1848 0.2435 REMARK 3 8 3.4900 - 3.3400 1.00 2693 146 0.2206 0.2697 REMARK 3 9 3.3400 - 3.2100 1.00 2724 136 0.2475 0.3053 REMARK 3 10 3.2100 - 3.1000 1.00 2678 145 0.2596 0.3120 REMARK 3 11 3.1000 - 3.0000 1.00 2689 146 0.2708 0.3497 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.375 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.803 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 63.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5453 REMARK 3 ANGLE : 0.563 7385 REMARK 3 CHIRALITY : 0.043 768 REMARK 3 PLANARITY : 0.004 966 REMARK 3 DIHEDRAL : 13.862 2083 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 88.7994 -26.9455 0.1894 REMARK 3 T TENSOR REMARK 3 T11: 0.5108 T22: 0.3692 REMARK 3 T33: 0.3638 T12: -0.0389 REMARK 3 T13: 0.0159 T23: 0.0170 REMARK 3 L TENSOR REMARK 3 L11: 0.5159 L22: 1.4235 REMARK 3 L33: 1.3108 L12: -0.3586 REMARK 3 L13: 0.0638 L23: 0.1220 REMARK 3 S TENSOR REMARK 3 S11: -0.0252 S12: -0.0610 S13: 0.0669 REMARK 3 S21: -0.0522 S22: 0.0532 S23: 0.0376 REMARK 3 S31: -0.4031 S32: 0.0117 S33: -0.0300 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7OPK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1292115567. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31644 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 20.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 19.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.890 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3FQD REMARK 200 REMARK 200 REMARK: NEEDLES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM FORMATE, 20 %(W/V) PEG REMARK 280 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 23.04667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.09333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 46.09333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 23.04667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 135 REMARK 465 LEU A 136 REMARK 465 LEU A 137 REMARK 465 LYS A 138 REMARK 465 MET A 139 REMARK 465 LEU A 140 REMARK 465 ARG A 141 REMARK 465 LYS A 142 REMARK 465 GLU A 143 REMARK 465 LYS A 144 REMARK 465 GLY A 145 REMARK 465 SER A 146 REMARK 465 ASN A 147 REMARK 465 MET A 148 REMARK 465 GLN A 149 REMARK 465 GLU A 150 REMARK 465 GLU A 151 REMARK 465 PRO A 152 REMARK 465 LEU A 153 REMARK 465 GLU A 154 REMARK 465 THR A 155 REMARK 465 VAL A 156 REMARK 465 VAL A 157 REMARK 465 LYS A 158 REMARK 465 ALA A 266 REMARK 465 LYS A 267 REMARK 465 ALA A 268 REMARK 465 ARG A 269 REMARK 465 LEU A 270 REMARK 465 CYS A 271 REMARK 465 LYS A 272 REMARK 465 LEU A 273 REMARK 465 CYS A 274 REMARK 465 GLY A 275 REMARK 465 GLN A 276 REMARK 465 LYS A 277 REMARK 465 GLY A 278 REMARK 465 HIS A 279 REMARK 465 ASP A 280 REMARK 465 GLU A 281 REMARK 465 ARG A 282 REMARK 465 SER A 283 REMARK 465 CYS A 284 REMARK 465 LYS A 285 REMARK 465 GLY A 286 REMARK 465 GLU A 287 REMARK 465 ALA A 288 REMARK 465 LYS A 289 REMARK 465 GLN A 290 REMARK 465 LYS A 291 REMARK 465 GLN A 292 REMARK 465 GLY A 293 REMARK 465 GLU A 294 REMARK 465 PHE A 295 REMARK 465 ASP A 296 REMARK 465 GLU A 297 REMARK 465 LYS A 298 REMARK 465 ASP A 299 REMARK 465 HIS A 300 REMARK 465 ALA A 301 REMARK 465 GLN A 302 REMARK 465 PRO A 303 REMARK 465 LEU A 304 REMARK 465 ASN A 423 REMARK 465 ALA A 424 REMARK 465 LYS A 425 REMARK 465 ARG A 426 REMARK 465 ARG A 427 REMARK 465 LYS A 428 REMARK 465 LEU A 429 REMARK 465 ASN A 430 REMARK 465 GLN A 431 REMARK 465 GLN A 432 REMARK 465 GLY A 433 REMARK 465 ALA A 434 REMARK 465 HIS A 435 REMARK 465 ALA A 436 REMARK 465 LYS A 437 REMARK 465 GLY A 438 REMARK 465 ALA A 439 REMARK 465 ALA A 440 REMARK 465 ASP A 441 REMARK 465 SER A 442 REMARK 465 HIS A 443 REMARK 465 ALA A 444 REMARK 465 GLY A 445 REMARK 465 LYS A 446 REMARK 465 SER A 447 REMARK 465 GLY A 448 REMARK 465 ARG A 449 REMARK 465 LYS A 450 REMARK 465 HIS A 451 REMARK 465 VAL A 452 REMARK 465 PRO A 453 REMARK 465 GLU A 454 REMARK 465 ALA A 455 REMARK 465 ALA A 456 REMARK 465 GLY A 457 REMARK 465 PRO A 458 REMARK 465 LEU A 459 REMARK 465 PRO A 460 REMARK 465 GLY A 461 REMARK 465 MET A 462 REMARK 465 ALA A 463 REMARK 465 LEU A 464 REMARK 465 PHE A 465 REMARK 465 PRO A 466 REMARK 465 ILE A 467 REMARK 465 THR A 468 REMARK 465 ASN A 469 REMARK 465 PRO A 470 REMARK 465 PRO A 471 REMARK 465 PRO A 472 REMARK 465 PRO A 473 REMARK 465 ALA A 474 REMARK 465 ILE A 475 REMARK 465 THR A 476 REMARK 465 HIS A 477 REMARK 465 ASP A 478 REMARK 465 MET A 479 REMARK 465 VAL A 480 REMARK 465 MET A 481 REMARK 465 LYS A 482 REMARK 465 GLY A 483 REMARK 465 ARG A 484 REMARK 465 SER A 485 REMARK 465 VAL A 486 REMARK 465 ASP A 487 REMARK 465 GLN A 488 REMARK 465 ALA A 489 REMARK 465 ASN A 490 REMARK 465 LEU A 491 REMARK 465 ALA A 492 REMARK 465 ASN A 493 REMARK 465 LYS A 494 REMARK 465 SER A 495 REMARK 465 ALA A 496 REMARK 465 ALA A 497 REMARK 465 SER A 498 REMARK 465 VAL A 499 REMARK 465 LEU A 500 REMARK 465 LYS A 501 REMARK 465 SER A 502 REMARK 465 GLN A 503 REMARK 465 ILE A 504 REMARK 465 GLN A 505 REMARK 465 SER A 506 REMARK 465 MET A 507 REMARK 465 MET A 508 REMARK 465 ALA A 509 REMARK 465 GLN A 510 REMARK 465 LYS A 511 REMARK 465 ALA A 512 REMARK 465 ALA A 513 REMARK 465 THR A 514 REMARK 465 ASN A 515 REMARK 465 ALA A 516 REMARK 465 ASN A 517 REMARK 465 GLY A 518 REMARK 465 ALA A 519 REMARK 465 GLU A 520 REMARK 465 LYS A 521 REMARK 465 ASP A 522 REMARK 465 VAL A 523 REMARK 465 SER A 524 REMARK 465 ALA A 525 REMARK 465 ASP A 526 REMARK 465 GLY A 527 REMARK 465 THR A 528 REMARK 465 THR A 529 REMARK 465 THR A 530 REMARK 465 ALA A 531 REMARK 465 PRO A 532 REMARK 465 ALA A 533 REMARK 465 SER A 534 REMARK 465 ALA A 535 REMARK 465 LEU A 536 REMARK 465 GLY A 537 REMARK 465 LYS A 538 REMARK 465 ARG A 539 REMARK 465 LYS A 540 REMARK 465 ALA A 541 REMARK 465 GLU A 542 REMARK 465 LEU A 543 REMARK 465 ILE A 544 REMARK 465 GLU A 545 REMARK 465 GLU A 546 REMARK 465 ASP A 547 REMARK 465 ALA A 548 REMARK 465 ALA A 549 REMARK 465 THR A 550 REMARK 465 ASN A 551 REMARK 465 THR A 552 REMARK 465 ASP A 553 REMARK 465 THR A 554 REMARK 465 ASP A 555 REMARK 465 SER A 556 REMARK 465 VAL A 557 REMARK 465 THR A 558 REMARK 465 ASP A 559 REMARK 465 GLY A 560 REMARK 465 THR A 561 REMARK 465 GLY A 562 REMARK 465 SER A 563 REMARK 465 ASP A 564 REMARK 465 ASN A 565 REMARK 465 GLU A 566 REMARK 465 GLY A 567 REMARK 465 PRO A 568 REMARK 465 ALA A 860 REMARK 465 GLY A 861 REMARK 465 ARG A 862 REMARK 465 SER A 863 REMARK 465 TYR A 864 REMARK 465 GLY A 865 REMARK 465 GLY A 866 REMARK 465 ALA A 867 REMARK 465 PRO A 868 REMARK 465 LEU A 869 REMARK 465 ARG A 870 REMARK 465 ASN A 871 REMARK 465 ASN A 872 REMARK 465 TYR A 873 REMARK 465 ASN A 874 REMARK 465 SER A 875 REMARK 465 LEU A 876 REMARK 465 GLU A 877 REMARK 465 HIS A 878 REMARK 465 HIS A 879 REMARK 465 HIS A 880 REMARK 465 HIS A 881 REMARK 465 HIS A 882 REMARK 465 HIS A 883 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 5 -2.50 69.79 REMARK 500 TYR A 14 76.60 -116.97 REMARK 500 PRO A 44 12.25 -69.25 REMARK 500 ASP A 55 92.50 -68.91 REMARK 500 LYS A 97 -58.23 -125.82 REMARK 500 PHE A 263 65.28 -115.54 REMARK 500 ASN A 327 73.82 55.76 REMARK 500 ASN A 350 -164.21 -162.43 REMARK 500 ARG A 573 71.84 54.18 REMARK 500 LYS A 587 -60.15 -93.98 REMARK 500 SER A 765 -157.15 -103.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 902 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 211 OE1 REMARK 620 2 ASP A 239 OD2 79.9 REMARK 620 3 ASP A 241 OD2 108.3 77.5 REMARK 620 4 ASP A 351 OD2 147.9 132.1 81.4 REMARK 620 N 1 2 3 DBREF 7OPK A 1 875 UNP G0S058 G0S058_CHATD 1 875 SEQADV 7OPK LEU A 876 UNP G0S058 EXPRESSION TAG SEQADV 7OPK GLU A 877 UNP G0S058 EXPRESSION TAG SEQADV 7OPK HIS A 878 UNP G0S058 EXPRESSION TAG SEQADV 7OPK HIS A 879 UNP G0S058 EXPRESSION TAG SEQADV 7OPK HIS A 880 UNP G0S058 EXPRESSION TAG SEQADV 7OPK HIS A 881 UNP G0S058 EXPRESSION TAG SEQADV 7OPK HIS A 882 UNP G0S058 EXPRESSION TAG SEQADV 7OPK HIS A 883 UNP G0S058 EXPRESSION TAG SEQRES 1 A 883 MET GLY ILE PRO ALA ALA PHE ARG TRP LEU SER ASN LYS SEQRES 2 A 883 TYR PRO LYS ILE ILE SER PRO VAL VAL GLU GLU ARG PRO SEQRES 3 A 883 ILE VAL MET PRO ASP GLY THR GLU ILE PRO VAL ASP ALA SEQRES 4 A 883 THR ARG PRO ASN PRO ASN GLY GLU GLU PHE ASP ASN LEU SEQRES 5 A 883 TYR LEU ASP MET ASN GLY ILE VAL HIS PRO CYS SER HIS SEQRES 6 A 883 PRO GLU ASP LYS PRO ALA PRO LYS ASP GLU GLU GLU MET SEQRES 7 A 883 MET ILE GLU ILE PHE LYS TYR THR ASP ARG ILE VAL LYS SEQRES 8 A 883 MET VAL ARG PRO ARG LYS ILE LEU MET ILE ALA VAL ASP SEQRES 9 A 883 GLY VAL ALA PRO ARG ALA LYS MET ASN GLN GLN ARG SER SEQRES 10 A 883 ARG ARG PHE ARG ALA ALA GLN GLU ALA LYS GLU LYS GLU SEQRES 11 A 883 GLU GLU LYS LYS GLN LEU LEU LYS MET LEU ARG LYS GLU SEQRES 12 A 883 LYS GLY SER ASN MET GLN GLU GLU PRO LEU GLU THR VAL SEQRES 13 A 883 VAL LYS LYS ALA PHE ASP SER ASN SER ILE THR PRO GLY SEQRES 14 A 883 THR PRO PHE MET ASP ILE LEU ALA ALA SER LEU ARG TYR SEQRES 15 A 883 TRP CYS ALA TYR LYS LEU ASN THR ASP PRO ALA TRP ALA SEQRES 16 A 883 LYS LEU LYS VAL ILE ILE SER ASP ALA THR VAL PRO GLY SEQRES 17 A 883 GLU GLY GLU HIS LYS ILE MET GLU PHE ILE ARG SER GLN SEQRES 18 A 883 ARG SER SER PRO GLU HIS ASN PRO ASN THR ARG HIS VAL SEQRES 19 A 883 ILE TYR GLY LEU ASP ALA ASP LEU ILE MET LEU GLY LEU SEQRES 20 A 883 ALA THR HIS GLU PRO HIS PHE ARG VAL LEU ARG GLU ASP SEQRES 21 A 883 VAL PHE PHE GLN GLU ALA LYS ALA ARG LEU CYS LYS LEU SEQRES 22 A 883 CYS GLY GLN LYS GLY HIS ASP GLU ARG SER CYS LYS GLY SEQRES 23 A 883 GLU ALA LYS GLN LYS GLN GLY GLU PHE ASP GLU LYS ASP SEQRES 24 A 883 HIS ALA GLN PRO LEU LYS PRO PHE ILE TRP LEU HIS VAL SEQRES 25 A 883 SER ILE LEU ARG GLU TYR LEU ALA ALA GLU LEU GLU VAL SEQRES 26 A 883 PRO ASN LEU PRO PHE ARG TRP ASP LEU GLU ARG ALA ILE SEQRES 27 A 883 ASP ASP TRP VAL PHE LEU CYS PHE PHE VAL GLY ASN ASP SEQRES 28 A 883 PHE LEU PRO HIS LEU PRO ALA LEU GLU ILE ARG GLU ASN SEQRES 29 A 883 GLY ILE ASP THR LEU THR ALA ILE TRP LYS ASP ASN LEU SEQRES 30 A 883 PRO ILE MET GLY GLY TYR LEU THR LYS ASP GLY HIS VAL SEQRES 31 A 883 ASP LEU GLU ARG ALA GLN TYR ILE LEU ASN GLY LEU ALA SEQRES 32 A 883 LYS GLN GLU ASP ALA ILE PHE ARG ARG ARG ARG GLU VAL SEQRES 33 A 883 GLU GLU ARG ARG GLU ALA ASN ALA LYS ARG ARG LYS LEU SEQRES 34 A 883 ASN GLN GLN GLY ALA HIS ALA LYS GLY ALA ALA ASP SER SEQRES 35 A 883 HIS ALA GLY LYS SER GLY ARG LYS HIS VAL PRO GLU ALA SEQRES 36 A 883 ALA GLY PRO LEU PRO GLY MET ALA LEU PHE PRO ILE THR SEQRES 37 A 883 ASN PRO PRO PRO PRO ALA ILE THR HIS ASP MET VAL MET SEQRES 38 A 883 LYS GLY ARG SER VAL ASP GLN ALA ASN LEU ALA ASN LYS SEQRES 39 A 883 SER ALA ALA SER VAL LEU LYS SER GLN ILE GLN SER MET SEQRES 40 A 883 MET ALA GLN LYS ALA ALA THR ASN ALA ASN GLY ALA GLU SEQRES 41 A 883 LYS ASP VAL SER ALA ASP GLY THR THR THR ALA PRO ALA SEQRES 42 A 883 SER ALA LEU GLY LYS ARG LYS ALA GLU LEU ILE GLU GLU SEQRES 43 A 883 ASP ALA ALA THR ASN THR ASP THR ASP SER VAL THR ASP SEQRES 44 A 883 GLY THR GLY SER ASP ASN GLU GLY PRO VAL ASP THR VAL SEQRES 45 A 883 ARG LEU TRP GLU GLU GLY TYR ALA ASP ARG TYR TYR GLU SEQRES 46 A 883 GLN LYS PHE LYS VAL ASP PRO LYS ASP ILE GLU PHE ARG SEQRES 47 A 883 HIS LYS VAL GLY ARG ALA TYR ALA GLU GLY LEU ALA TRP SEQRES 48 A 883 VAL LEU GLN TYR TYR TYR GLN GLY CYS PRO SER TRP GLU SEQRES 49 A 883 TRP PHE TYR PRO TYR HIS TYR ALA PRO PHE ALA ALA ASP SEQRES 50 A 883 PHE VAL ASP LEU ALA LYS MET GLU ILE LYS PHE GLU LYS SEQRES 51 A 883 GLY ARG ILE SER ARG PRO PHE GLU GLN LEU MET SER VAL SEQRES 52 A 883 LEU PRO ALA ALA SER ARG HIS ALA ILE PRO GLU VAL TYR SEQRES 53 A 883 HIS ASP LEU MET THR ASP PRO ASN SER PRO ILE ILE ASP SEQRES 54 A 883 PHE TYR PRO GLU GLU PHE GLU ILE ASP LEU ASN GLY LYS SEQRES 55 A 883 LYS MET ALA TRP GLN GLY VAL ALA LEU LEU PRO PHE ILE SEQRES 56 A 883 GLU MET PRO ARG LEU LEU ALA ALA MET LYS GLU ARG GLU SEQRES 57 A 883 HIS LEU LEU SER GLU GLU ASP ARG ALA ARG ASN GLU PRO SEQRES 58 A 883 GLY PHE ASP VAL LEU LEU ILE SER ASP ALA HIS PRO GLY SEQRES 59 A 883 LEU TYR GLU ASP ILE THR SER HIS PHE TYR SER LYS LYS SEQRES 60 A 883 GLN GLY ALA PRO LYS PHE LYS LEU ASN PRO ARG ARG SER SEQRES 61 A 883 ASP GLY LEU ALA GLY LYS VAL GLU LYS ILE GLU GLY TYR SEQRES 62 A 883 VAL PRO HIS GLY SER LEU VAL TYR PRO LEU ALA ARG ASN SEQRES 63 A 883 SER MET PRO ASP VAL ASP TYR ASP ARG SER ILE THR VAL SEQRES 64 A 883 ARG TYR ILE MET PRO SER SER ALA HIS GLN HIS LYS SER SEQRES 65 A 883 MET LEU LEU ARG GLY VAL LYS LEU PRO PRO PRO ALA LEU SEQRES 66 A 883 SER ARG SER ASP ILE GLU ILE ILE ARG SER LYS ALA LYS SEQRES 67 A 883 ASN ALA GLY ARG SER TYR GLY GLY ALA PRO LEU ARG ASN SEQRES 68 A 883 ASN TYR ASN SER LEU GLU HIS HIS HIS HIS HIS HIS HET MG A 901 1 HET MG A 902 1 HETNAM MG MAGNESIUM ION FORMUL 2 MG 2(MG 2+) FORMUL 4 HOH *(H2 O) HELIX 1 AA1 ALA A 5 TYR A 14 1 10 HELIX 2 AA2 MET A 56 HIS A 65 1 10 HELIX 3 AA3 ASP A 74 ARG A 94 1 21 HELIX 4 AA4 PRO A 108 GLU A 132 1 25 HELIX 5 AA5 ASP A 162 ILE A 166 5 5 HELIX 6 AA6 THR A 170 ASP A 191 1 22 HELIX 7 AA7 PRO A 192 ALA A 195 5 4 HELIX 8 AA8 GLU A 209 SER A 223 1 15 HELIX 9 AA9 ALA A 240 THR A 249 1 10 HELIX 10 AB1 VAL A 312 GLU A 324 1 13 HELIX 11 AB2 ASP A 333 CYS A 345 1 13 HELIX 12 AB3 PHE A 346 GLY A 349 5 4 HELIX 13 AB4 GLU A 360 GLU A 363 5 4 HELIX 14 AB5 ASN A 364 GLY A 381 1 18 HELIX 15 AB6 ASP A 391 ALA A 422 1 32 HELIX 16 AB7 GLY A 578 LYS A 587 1 10 HELIX 17 AB8 ASP A 594 GLY A 619 1 26 HELIX 18 AB9 PHE A 634 PHE A 638 5 5 HELIX 19 AC1 ASP A 640 MET A 644 5 5 HELIX 20 AC2 ARG A 655 LEU A 664 1 10 HELIX 21 AC3 PRO A 665 ILE A 672 5 8 HELIX 22 AC4 PRO A 673 VAL A 675 5 3 HELIX 23 AC5 TYR A 676 ASP A 682 1 7 HELIX 24 AC6 ILE A 687 TYR A 691 5 5 HELIX 25 AC7 GLU A 716 GLU A 726 1 11 HELIX 26 AC8 ARG A 727 LEU A 731 5 5 HELIX 27 AC9 SER A 732 ASN A 739 1 8 HELIX 28 AD1 GLY A 754 TYR A 764 1 11 HELIX 29 AD2 SER A 846 LYS A 858 1 13 SHEET 1 AA111 ILE A 18 PRO A 20 0 SHEET 2 AA111 PHE A 307 HIS A 311 -1 O TRP A 309 N SER A 19 SHEET 3 AA111 PHE A 254 GLU A 259 -1 N ARG A 258 O ILE A 308 SHEET 4 AA111 HIS A 233 TYR A 236 1 N ILE A 235 O LEU A 257 SHEET 5 AA111 ASN A 51 ASP A 55 1 N TYR A 53 O VAL A 234 SHEET 6 AA111 ILE A 98 ALA A 102 1 O MET A 100 N LEU A 54 SHEET 7 AA111 LYS A 198 SER A 202 1 O ILE A 200 N ILE A 101 SHEET 8 AA111 VAL A 745 SER A 749 -1 O LEU A 747 N VAL A 199 SHEET 9 AA111 SER A 816 ILE A 822 -1 O VAL A 819 N LEU A 746 SHEET 10 AA111 GLY A 785 GLU A 788 -1 N LYS A 786 O ILE A 822 SHEET 11 AA111 LYS A 772 LEU A 775 -1 N LEU A 775 O GLY A 785 SHEET 1 AA2 2 ILE A 27 VAL A 28 0 SHEET 2 AA2 2 GLU A 34 ILE A 35 -1 O ILE A 35 N ILE A 27 SHEET 1 AA3 2 THR A 385 LYS A 386 0 SHEET 2 AA3 2 HIS A 389 VAL A 390 -1 O HIS A 389 N LYS A 386 SHEET 1 AA4 2 ILE A 697 ASP A 698 0 SHEET 2 AA4 2 VAL A 709 ALA A 710 -1 O VAL A 709 N ASP A 698 LINK OE2 GLU A 211 MG MG A 901 1555 1555 1.81 LINK OE1 GLU A 211 MG MG A 902 1555 1555 2.25 LINK OD2 ASP A 239 MG MG A 902 1555 1555 2.30 LINK OD2 ASP A 241 MG MG A 902 1555 1555 2.56 LINK OD2 ASP A 351 MG MG A 902 1555 1555 2.99 CRYST1 198.780 198.780 69.140 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005031 0.002904 0.000000 0.00000 SCALE2 0.000000 0.005809 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014463 0.00000