HEADER VIRAL PROTEIN 01-JUN-21 7OPM TITLE PHOSPHORYLATED ERK2 IN COMPLEX WITH ORF45 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MAP KINASE 1,MAPK 1,ERT1,EXTRACELLULAR SIGNAL-REGULATED COMPND 5 KINASE 2,ERK-2,MAP KINASE ISOFORM P42,P42-MAPK,MITOGEN-ACTIVATED COMPND 6 PROTEIN KINASE 2,MAP KINASE 2,MAPK 2; COMPND 7 EC: 2.7.11.24; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: SYNTHETIC ERK2 INHIBITOR PEPTIDE; COMPND 11 CHAIN: B; COMPND 12 SYNONYM: P28; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: PROTEIN ORF45; COMPND 16 CHAIN: C; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAPK1, ERK2, PRKM1, PRKM2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: HUMAN HERPESVIRUS 8; SOURCE 15 ORGANISM_COMMON: HHV-8, KAPOSI'S SARCOMA-ASSOCIATED HERPESVIRUS; SOURCE 16 ORGANISM_TAXID: 868565 KEYWDS MAPK, ERK2, PHOSPHORYLATED ERK2, ORF45, KAPOSI'S SARCOMA-ASSOCIATED KEYWDS 2 HERPESVIRUS, FXFP-MOTIF, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.SOK,A.REMENYI,A.ALEXA,A.POTI REVDAT 6 13-NOV-24 7OPM 1 REMARK REVDAT 5 31-JAN-24 7OPM 1 REMARK REVDAT 4 15-NOV-23 7OPM 1 LINK ATOM REVDAT 3 12-OCT-22 7OPM 1 REMARK REVDAT 2 09-FEB-22 7OPM 1 JRNL REVDAT 1 02-FEB-22 7OPM 0 JRNL AUTH A.ALEXA,P.SOK,F.GROSS,K.ALBERT,E.KOBORI,A.L.POTI,G.GOGL, JRNL AUTH 2 I.BENTO,E.KUANG,S.S.TAYLOR,F.ZHU,A.CILIBERTO,A.REMENYI JRNL TITL A NON-CATALYTIC HERPESVIRAL PROTEIN RECONFIGURES ERK-RSK JRNL TITL 2 SIGNALING BY TARGETING KINASE DOCKING SYSTEMS IN THE HOST. JRNL REF NAT COMMUN V. 13 472 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 35078976 JRNL DOI 10.1038/S41467-022-28109-X REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 16413 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.940 REMARK 3 FREE R VALUE TEST SET COUNT : 1632 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.1200 - 5.6100 0.98 1288 141 0.1965 0.1852 REMARK 3 2 5.6100 - 4.4500 0.99 1253 136 0.1946 0.2537 REMARK 3 3 4.4500 - 3.8900 0.99 1235 140 0.1967 0.2085 REMARK 3 4 3.8900 - 3.5300 0.99 1241 132 0.2183 0.2390 REMARK 3 5 3.5300 - 3.2800 0.98 1218 139 0.2502 0.2377 REMARK 3 6 3.2800 - 3.0900 0.99 1229 132 0.2697 0.2607 REMARK 3 7 3.0900 - 2.9300 0.99 1226 130 0.3019 0.3470 REMARK 3 8 2.9300 - 2.8000 0.99 1229 142 0.3133 0.3558 REMARK 3 9 2.8000 - 2.7000 1.00 1228 140 0.3278 0.3533 REMARK 3 10 2.7000 - 2.6000 1.00 1212 135 0.3411 0.3704 REMARK 3 11 2.6000 - 2.5200 0.99 1230 137 0.3358 0.4088 REMARK 3 12 2.5200 - 2.4500 0.99 1192 128 0.3472 0.3772 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 77.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID -1:44 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.220 -11.744 18.265 REMARK 3 T TENSOR REMARK 3 T11: 0.8856 T22: 0.2891 REMARK 3 T33: 0.5107 T12: -0.0065 REMARK 3 T13: -0.0655 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 9.0736 L22: 0.5440 REMARK 3 L33: 6.1567 L12: 0.2210 REMARK 3 L13: 5.1256 L23: 1.4250 REMARK 3 S TENSOR REMARK 3 S11: 0.2074 S12: 0.9209 S13: -0.5576 REMARK 3 S21: -0.3022 S22: -0.0830 S23: -0.3468 REMARK 3 S31: 0.5221 S32: 0.7224 S33: 0.0508 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 45:274 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.051 -4.002 16.179 REMARK 3 T TENSOR REMARK 3 T11: 0.5621 T22: 0.7569 REMARK 3 T33: 0.3782 T12: 0.0508 REMARK 3 T13: -0.0261 T23: -0.1182 REMARK 3 L TENSOR REMARK 3 L11: 4.7808 L22: 1.2694 REMARK 3 L33: 2.6347 L12: -0.2098 REMARK 3 L13: 0.3269 L23: 0.0193 REMARK 3 S TENSOR REMARK 3 S11: -0.0480 S12: 0.3413 S13: -0.2776 REMARK 3 S21: -0.0851 S22: -0.1133 S23: 0.2968 REMARK 3 S31: -0.1050 S32: -1.2255 S33: 0.1478 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 275:360 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.493 3.865 19.083 REMARK 3 T TENSOR REMARK 3 T11: 0.6966 T22: 0.8713 REMARK 3 T33: 0.3814 T12: 0.1467 REMARK 3 T13: -0.1142 T23: -0.0486 REMARK 3 L TENSOR REMARK 3 L11: 3.9276 L22: 1.3499 REMARK 3 L33: 3.8481 L12: -0.6833 REMARK 3 L13: -1.0822 L23: 0.4432 REMARK 3 S TENSOR REMARK 3 S11: 0.0159 S12: 0.1981 S13: 0.3909 REMARK 3 S21: -0.0464 S22: -0.0449 S23: 0.2648 REMARK 3 S31: -0.7334 S32: -1.2103 S33: -0.0324 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN C AND RESID 30:39 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.037 -13.089 -2.200 REMARK 3 T TENSOR REMARK 3 T11: 1.2539 T22: 1.8755 REMARK 3 T33: 0.9135 T12: -0.2450 REMARK 3 T13: -0.1374 T23: -0.3197 REMARK 3 L TENSOR REMARK 3 L11: 4.7906 L22: 9.6768 REMARK 3 L33: 5.8129 L12: -3.5086 REMARK 3 L13: 1.1416 L23: -7.1142 REMARK 3 S TENSOR REMARK 3 S11: -1.4681 S12: 0.9453 S13: -0.4513 REMARK 3 S21: -2.0011 S22: 1.4832 S23: 1.1960 REMARK 3 S31: 0.7818 S32: -1.9634 S33: -0.0375 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN B AND RESID 3:10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.530 -6.313 40.606 REMARK 3 T TENSOR REMARK 3 T11: 1.0903 T22: 1.1406 REMARK 3 T33: 0.5141 T12: 0.3001 REMARK 3 T13: 0.0839 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 5.2509 L22: 1.0300 REMARK 3 L33: 5.4345 L12: 2.1689 REMARK 3 L13: -1.4127 L23: -1.4050 REMARK 3 S TENSOR REMARK 3 S11: -0.5974 S12: -1.5884 S13: -0.7385 REMARK 3 S21: 0.8353 S22: 0.4634 S23: 0.0339 REMARK 3 S31: 0.9586 S32: -0.0688 S33: 0.2672 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN B AND RESID 11:20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.481 6.495 41.493 REMARK 3 T TENSOR REMARK 3 T11: 0.9979 T22: 1.0075 REMARK 3 T33: 0.6038 T12: 0.1228 REMARK 3 T13: -0.0627 T23: -0.2078 REMARK 3 L TENSOR REMARK 3 L11: 5.5929 L22: 4.4476 REMARK 3 L33: 8.8698 L12: 0.2668 REMARK 3 L13: -1.7334 L23: 2.7317 REMARK 3 S TENSOR REMARK 3 S11: -0.2818 S12: -1.5996 S13: 0.6193 REMARK 3 S21: 0.5447 S22: 0.2878 S23: 0.1816 REMARK 3 S31: -0.5182 S32: -0.4024 S33: -0.0352 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7OPM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1292116168. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16460 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 47.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : 0.12300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.40 REMARK 200 R MERGE FOR SHELL (I) : 1.30700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2ERK REMARK 200 REMARK 200 REMARK: THICK NEEDLES GROWN IN CLUSTERS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS PH 8.3, 20% PEG 8000 WITH REMARK 280 1.25 M NACL IN RESERVOIR, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 105.04700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.57450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 105.04700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.57450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 534 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 ARG C 27 REMARK 465 PRO C 28 REMARK 465 SER C 40 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA A -1 CB REMARK 470 MET A 1 CG SD CE REMARK 470 GLU A 60 CG CD OE1 OE2 REMARK 470 LYS A 99 CG CD CE NZ REMARK 470 ARG A 225 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 250 CD OE1 OE2 REMARK 470 LYS A 259 CG CD CE NZ REMARK 470 LEU A 264 CG CD1 CD2 REMARK 470 LEU A 267 CG CD1 CD2 REMARK 470 LYS A 292 CG CD CE NZ REMARK 470 ARG A 359 CG CD NE CZ NH1 NH2 REMARK 470 MET B 3 CG SD CE REMARK 470 GLN B 4 CG CD OE1 NE2 REMARK 470 ARG B 19 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 20 CG CD NE CZ NH1 NH2 REMARK 470 VAL C 30 CG1 CG2 REMARK 470 PRO C 38 O REMARK 470 LEU C 39 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU B 5 C ABU B 6 N 0.178 REMARK 500 ABU B 6 C LEU B 7 N 0.161 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ABU B 6 O - C - N ANGL. DEV. = -19.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 149 30.51 -148.90 REMARK 500 ALA A 189 163.11 75.03 REMARK 500 ASN A 201 71.23 -116.41 REMARK 500 GLU A 322 78.20 -119.76 REMARK 500 LEU B 7 -75.55 77.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 535 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH A 536 DISTANCE = 7.41 ANGSTROMS REMARK 525 HOH B 102 DISTANCE = 7.70 ANGSTROMS REMARK 525 HOH C 101 DISTANCE = 7.86 ANGSTROMS DBREF 7OPM A 1 360 UNP P28482 MK01_HUMAN 1 360 DBREF 7OPM B 3 20 PDB 7OPM 7OPM 3 20 DBREF 7OPM C 27 40 UNP F5HDE4 ORF45_HHV8P 27 40 SEQADV 7OPM GLY A -3 UNP P28482 EXPRESSION TAG SEQADV 7OPM SER A -2 UNP P28482 EXPRESSION TAG SEQADV 7OPM ALA A -1 UNP P28482 EXPRESSION TAG SEQADV 7OPM SER A 0 UNP P28482 EXPRESSION TAG SEQRES 1 A 364 GLY SER ALA SER MET ALA ALA ALA ALA ALA ALA GLY ALA SEQRES 2 A 364 GLY PRO GLU MET VAL ARG GLY GLN VAL PHE ASP VAL GLY SEQRES 3 A 364 PRO ARG TYR THR ASN LEU SER TYR ILE GLY GLU GLY ALA SEQRES 4 A 364 TYR GLY MET VAL CYS SER ALA TYR ASP ASN VAL ASN LYS SEQRES 5 A 364 VAL ARG VAL ALA ILE LYS LYS ILE SER PRO PHE GLU HIS SEQRES 6 A 364 GLN THR TYR CYS GLN ARG THR LEU ARG GLU ILE LYS ILE SEQRES 7 A 364 LEU LEU ARG PHE ARG HIS GLU ASN ILE ILE GLY ILE ASN SEQRES 8 A 364 ASP ILE ILE ARG ALA PRO THR ILE GLU GLN MET LYS ASP SEQRES 9 A 364 VAL TYR ILE VAL GLN ASP LEU MET GLU THR ASP LEU TYR SEQRES 10 A 364 LYS LEU LEU LYS THR GLN HIS LEU SER ASN ASP HIS ILE SEQRES 11 A 364 CYS TYR PHE LEU TYR GLN ILE LEU ARG GLY LEU LYS TYR SEQRES 12 A 364 ILE HIS SER ALA ASN VAL LEU HIS ARG ASP LEU LYS PRO SEQRES 13 A 364 SER ASN LEU LEU LEU ASN THR THR CYS ASP LEU LYS ILE SEQRES 14 A 364 CYS ASP PHE GLY LEU ALA ARG VAL ALA ASP PRO ASP HIS SEQRES 15 A 364 ASP HIS THR GLY PHE LEU TPO GLU PTR VAL ALA THR ARG SEQRES 16 A 364 TRP TYR ARG ALA PRO GLU ILE MET LEU ASN SER LYS GLY SEQRES 17 A 364 TYR THR LYS SER ILE ASP ILE TRP SER VAL GLY CYS ILE SEQRES 18 A 364 LEU ALA GLU MET LEU SER ASN ARG PRO ILE PHE PRO GLY SEQRES 19 A 364 LYS HIS TYR LEU ASP GLN LEU ASN HIS ILE LEU GLY ILE SEQRES 20 A 364 LEU GLY SER PRO SER GLN GLU ASP LEU ASN CYS ILE ILE SEQRES 21 A 364 ASN LEU LYS ALA ARG ASN TYR LEU LEU SER LEU PRO HIS SEQRES 22 A 364 LYS ASN LYS VAL PRO TRP ASN ARG LEU PHE PRO ASN ALA SEQRES 23 A 364 ASP SER LYS ALA LEU ASP LEU LEU ASP LYS MET LEU THR SEQRES 24 A 364 PHE ASN PRO HIS LYS ARG ILE GLU VAL GLU GLN ALA LEU SEQRES 25 A 364 ALA HIS PRO TYR LEU GLU GLN TYR TYR ASP PRO SER ASP SEQRES 26 A 364 GLU PRO ILE ALA GLU ALA PRO PHE LYS PHE ASP MET GLU SEQRES 27 A 364 LEU ASP ASP LEU PRO LYS GLU LYS LEU LYS GLU LEU ILE SEQRES 28 A 364 PHE GLU GLU THR ALA ARG PHE GLN PRO GLY TYR ARG SER SEQRES 1 B 18 MET GLN LEU ABU LEU ASP SER SER ASN LEU ALA ARG ARG SEQRES 2 B 18 ARG ARG ARG ARG ARG SEQRES 1 C 14 ARG PRO PRO VAL LYS PHE ILE PHE PRO PRO PRO PRO LEU SEQRES 2 C 14 SER MODRES 7OPM TPO A 185 THR MODIFIED RESIDUE MODRES 7OPM PTR A 187 TYR MODIFIED RESIDUE HET TPO A 185 11 HET PTR A 187 16 HET ABU B 6 6 HET 08G A 401 23 HET GOL A 402 6 HET GOL A 403 6 HET GOL A 404 6 HETNAM TPO PHOSPHOTHREONINE HETNAM PTR O-PHOSPHOTYROSINE HETNAM ABU GAMMA-AMINO-BUTANOIC ACID HETNAM 08G 1-[4-(HYDROXYMETHYL)-1H-PYRAZOLO[4,3-C]PYRIDIN-6-YL]-3- HETNAM 2 08G [(1S)-1-PHENYLETHYL]UREA HETNAM GOL GLYCEROL HETSYN TPO PHOSPHONOTHREONINE HETSYN PTR PHOSPHONOTYROSINE HETSYN ABU GAMMA(AMINO)-BUTYRIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 TPO C4 H10 N O6 P FORMUL 1 PTR C9 H12 N O6 P FORMUL 2 ABU C4 H9 N O2 FORMUL 4 08G C16 H17 N5 O2 FORMUL 5 GOL 3(C3 H8 O3) FORMUL 8 HOH *39(H2 O) HELIX 1 AA1 SER A 0 GLY A 8 1 9 HELIX 2 AA2 HIS A 61 PHE A 78 1 18 HELIX 3 AA3 THR A 94 MET A 98 5 5 HELIX 4 AA4 LEU A 112 GLN A 119 1 8 HELIX 5 AA5 SER A 122 ALA A 143 1 22 HELIX 6 AA6 LYS A 151 SER A 153 5 3 HELIX 7 AA7 THR A 190 ARG A 194 5 5 HELIX 8 AA8 ALA A 195 ASN A 201 1 7 HELIX 9 AA9 LYS A 207 ASN A 224 1 18 HELIX 10 AB1 HIS A 232 GLY A 245 1 14 HELIX 11 AB2 SER A 248 CYS A 254 1 7 HELIX 12 AB3 ASN A 257 LEU A 267 1 11 HELIX 13 AB4 PRO A 274 PHE A 279 1 6 HELIX 14 AB5 ASP A 283 LEU A 294 1 12 HELIX 15 AB6 GLU A 303 ALA A 309 1 7 HELIX 16 AB7 HIS A 310 GLU A 314 5 5 HELIX 17 AB8 ASP A 318 GLU A 322 5 5 HELIX 18 AB9 LYS A 330 LEU A 335 5 6 HELIX 19 AC1 PRO A 339 THR A 351 1 13 HELIX 20 AC2 SER B 10 ARG B 20 1 11 SHEET 1 AA1 2 GLU A 12 VAL A 14 0 SHEET 2 AA1 2 GLN A 17 PHE A 19 -1 O GLN A 17 N VAL A 14 SHEET 1 AA2 5 TYR A 25 GLU A 33 0 SHEET 2 AA2 5 GLY A 37 ASP A 44 -1 O TYR A 43 N THR A 26 SHEET 3 AA2 5 VAL A 49 ILE A 56 -1 O VAL A 49 N ASP A 44 SHEET 4 AA2 5 VAL A 101 ASP A 106 -1 O ILE A 103 N LYS A 54 SHEET 5 AA2 5 ASP A 88 ILE A 90 -1 N ILE A 90 O TYR A 102 SHEET 1 AA3 3 THR A 110 ASP A 111 0 SHEET 2 AA3 3 LEU A 155 LEU A 157 -1 O LEU A 157 N THR A 110 SHEET 3 AA3 3 LEU A 163 ILE A 165 -1 O LYS A 164 N LEU A 156 SHEET 1 AA4 2 VAL A 145 LEU A 146 0 SHEET 2 AA4 2 ARG A 172 VAL A 173 -1 O ARG A 172 N LEU A 146 LINK SG CYS A 161 CB ABU B 6 1555 1555 1.78 LINK C LEU A 184 N TPO A 185 1555 1555 1.33 LINK C TPO A 185 N GLU A 186 1555 1555 1.33 LINK C GLU A 186 N PTR A 187 1555 1555 1.33 LINK C PTR A 187 N VAL A 188 1555 1555 1.33 LINK C LEU B 5 N ABU B 6 1555 1555 1.51 LINK C ABU B 6 N LEU B 7 1555 1555 1.50 CRYST1 210.094 41.149 51.701 90.00 92.35 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004760 0.000000 0.000195 0.00000 SCALE2 0.000000 0.024302 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019358 0.00000