HEADER LYASE 03-JUN-21 7OQM TITLE HUMAN OMPD-DOMAIN OF UMPS IN COMPLEX WITH SUBSTRATE OMP AT 1.05 TITLE 2 ANGSTROMS RESOLUTION, 20 MINUTES SOAKING COMPND MOL_ID: 1; COMPND 2 MOLECULE: URIDINE 5'-MONOPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UMP SYNTHASE; COMPND 5 EC: 2.4.2.10,4.1.1.23; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: URIDINE 5'-MONOPHOSPHATE SYNTHASE; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: UMP SYNTHASE; COMPND 11 EC: 2.4.2.10,4.1.1.23; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UMPS, OK/SW-CL.21; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: UMPS, OK/SW-CL.21; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS OMPD, UMPS, UMP, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR S.RINDFLEISCH,F.RABE VON PAPPENHEIM,K.TITTMANN REVDAT 3 31-JAN-24 7OQM 1 REMARK REVDAT 2 04-MAY-22 7OQM 1 JRNL REVDAT 1 13-APR-22 7OQM 0 JRNL AUTH S.RINDFLEISCH,M.KRULL,J.URANGA,T.SCHMIDT, JRNL AUTH 2 F.RABE VON PAPPENHEIM,L.L.KIRCK,A.BALOURI,T.SCHNEIDER, JRNL AUTH 3 A.CHARI,R.KLUGER,G.BOURENKOV,U.DIEDERICHSEN,R.A.MATA, JRNL AUTH 4 K.TITTMANN JRNL TITL GROUND-STATE DESTABILIZATION BY ELECTROSTATIC REPULSION IS JRNL TITL 2 NOT A DRIVING FORCE IN OROTIDINE-5-MONOPHOSPHATE JRNL TITL 3 DECARBOXYLASE CATALYSIS JRNL REF NAT CATAL V. 5 332 2022 JRNL REFN ESSN 2520-1158 JRNL DOI 10.1038/S41929-022-00771-W REMARK 2 REMARK 2 RESOLUTION. 1.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 236444 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.122 REMARK 3 R VALUE (WORKING SET) : 0.121 REMARK 3 FREE R VALUE : 0.134 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 12264 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 16694 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.34 REMARK 3 BIN R VALUE (WORKING SET) : 0.2890 REMARK 3 BIN FREE R VALUE SET COUNT : 897 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3923 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 98 REMARK 3 SOLVENT ATOMS : 706 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.92 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.18000 REMARK 3 B22 (A**2) : -0.97000 REMARK 3 B33 (A**2) : 0.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.57000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.021 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.021 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.018 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.880 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.986 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.983 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4565 ; 0.007 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4329 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6245 ; 1.468 ; 1.635 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10084 ; 1.525 ; 1.592 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 615 ; 6.730 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 210 ;31.966 ;22.238 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 814 ;12.904 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;16.092 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 589 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5286 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 935 ; 0.003 ; 0.021 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 8894 ; 0.884 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7OQM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1292107255. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.827 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 248705 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.050 REMARK 200 RESOLUTION RANGE LOW (A) : 42.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 3.491 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.19 REMARK 200 R MERGE FOR SHELL (I) : 0.80000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 6ZWY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, TRIS/HCL, REMARK 280 GLUTATHION, GLYCEROL, PH 7.8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.94100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -65.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 480 REMARK 465 VAL B 480 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 476 O HOH B 602 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 295 CG - SD - CE ANGL. DEV. = -10.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 306 78.08 69.72 REMARK 500 ALA A 316 32.17 -161.07 REMARK 500 PHE A 396 -38.76 -131.56 REMARK 500 GLU B 306 78.34 69.49 REMARK 500 ALA B 316 32.95 -160.47 REMARK 500 PHE B 396 -38.08 -131.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 400 ILE A 401 149.40 REMARK 500 PHE B 400 ILE B 401 149.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 948 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A 949 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A 950 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH A 951 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A 952 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH A 953 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH A 954 DISTANCE = 6.75 ANGSTROMS REMARK 525 HOH A 955 DISTANCE = 6.81 ANGSTROMS REMARK 525 HOH A 956 DISTANCE = 6.99 ANGSTROMS REMARK 525 HOH A 957 DISTANCE = 7.52 ANGSTROMS REMARK 525 HOH A 958 DISTANCE = 7.68 ANGSTROMS REMARK 525 HOH A 959 DISTANCE = 9.31 ANGSTROMS REMARK 525 HOH A 960 DISTANCE = 10.35 ANGSTROMS REMARK 525 HOH A 961 DISTANCE = 10.98 ANGSTROMS REMARK 525 HOH A 962 DISTANCE = 12.78 ANGSTROMS REMARK 525 HOH B 937 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH B 938 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH B 939 DISTANCE = 6.59 ANGSTROMS REMARK 525 HOH B 940 DISTANCE = 6.64 ANGSTROMS REMARK 525 HOH B 941 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH B 942 DISTANCE = 6.88 ANGSTROMS REMARK 525 HOH B 943 DISTANCE = 6.91 ANGSTROMS REMARK 525 HOH B 944 DISTANCE = 8.29 ANGSTROMS DBREF 7OQM A 224 480 UNP P11172 UMPS_HUMAN 224 480 DBREF 7OQM B 224 480 UNP P11172 UMPS_HUMAN 224 480 SEQRES 1 A 257 GLU LEU SER PHE GLY ALA ARG ALA GLU LEU PRO ARG ILE SEQRES 2 A 257 HIS PRO VAL ALA SER LYS LEU LEU ARG LEU MET GLN LYS SEQRES 3 A 257 LYS GLU THR ASN LEU CYS LEU SER ALA ASP VAL SER LEU SEQRES 4 A 257 ALA ARG GLU LEU LEU GLN LEU ALA ASP ALA LEU GLY PRO SEQRES 5 A 257 SER ILE CYS MET LEU LYS THR HIS VAL ASP ILE LEU ASN SEQRES 6 A 257 ASP PHE THR LEU ASP VAL MET LYS GLU LEU ILE THR LEU SEQRES 7 A 257 ALA LYS CSS HIS GLU PHE LEU ILE PHE GLU ASP ARG ALY SEQRES 8 A 257 PHE ALA ASP ILE GLY ASN THR VAL LYS LYS GLN TYR GLU SEQRES 9 A 257 GLY GLY ILE PHE LYS ILE ALA SER TRP ALA ASP LEU VAL SEQRES 10 A 257 ASN ALA HIS VAL VAL PRO GLY SER GLY VAL VAL LYS GLY SEQRES 11 A 257 LEU GLN GLU VAL GLY LEU PRO LEU HIS ARG GLY CYS LEU SEQRES 12 A 257 LEU ILE ALA GLU MET SER SER THR GLY SER LEU ALA THR SEQRES 13 A 257 GLY ASP TYR THR ARG ALA ALA VAL ARG MET ALA GLU GLU SEQRES 14 A 257 HIS SER GLU PHE VAL VAL GLY PHE ILE SER GLY SER ARG SEQRES 15 A 257 VAL SER MET LYS PRO GLU PHE LEU HIS LEU THR PRO GLY SEQRES 16 A 257 VAL GLN LEU GLU ALA GLY GLY ASP ASN LEU GLY GLN GLN SEQRES 17 A 257 TYR ASN SER PRO GLN GLU VAL ILE GLY LYS ARG GLY SER SEQRES 18 A 257 ASP ILE ILE ILE VAL GLY ARG GLY ILE ILE SER ALA ALA SEQRES 19 A 257 ASP ARG LEU GLU ALA ALA GLU MET TYR ARG LYS ALA ALA SEQRES 20 A 257 TRP GLU ALA TYR LEU SER ARG LEU GLY VAL SEQRES 1 B 257 GLU LEU SER PHE GLY ALA ARG ALA GLU LEU PRO ARG ILE SEQRES 2 B 257 HIS PRO VAL ALA SER LYS LEU LEU ARG LEU MET GLN LYS SEQRES 3 B 257 LYS GLU THR ASN LEU CYS LEU SER ALA ASP VAL SER LEU SEQRES 4 B 257 ALA ARG GLU LEU LEU GLN LEU ALA ASP ALA LEU GLY PRO SEQRES 5 B 257 SER ILE CYS MET LEU LYS THR HIS VAL ASP ILE LEU ASN SEQRES 6 B 257 ASP PHE THR LEU ASP VAL MET LYS GLU LEU ILE THR LEU SEQRES 7 B 257 ALA LYS CYS HIS GLU PHE LEU ILE PHE GLU ASP ARG ALY SEQRES 8 B 257 PHE ALA ASP ILE GLY ASN THR VAL LYS LYS GLN TYR GLU SEQRES 9 B 257 GLY GLY ILE PHE LYS ILE ALA SER TRP ALA ASP LEU VAL SEQRES 10 B 257 ASN ALA HIS VAL VAL PRO GLY SER GLY VAL VAL LYS GLY SEQRES 11 B 257 LEU GLN GLU VAL GLY LEU PRO LEU HIS ARG GLY CYS LEU SEQRES 12 B 257 LEU ILE ALA GLU MET SER SER THR GLY SER LEU ALA THR SEQRES 13 B 257 GLY ASP TYR THR ARG ALA ALA VAL ARG MET ALA GLU GLU SEQRES 14 B 257 HIS SER GLU PHE VAL VAL GLY PHE ILE SER GLY SER ARG SEQRES 15 B 257 VAL SER MET LYS PRO GLU PHE LEU HIS LEU THR PRO GLY SEQRES 16 B 257 VAL GLN LEU GLU ALA GLY GLY ASP ASN LEU GLY GLN GLN SEQRES 17 B 257 TYR ASN SER PRO GLN GLU VAL ILE GLY LYS ARG GLY SER SEQRES 18 B 257 ASP ILE ILE ILE VAL GLY ARG GLY ILE ILE SER ALA ALA SEQRES 19 B 257 ASP ARG LEU GLU ALA ALA GLU MET TYR ARG LYS ALA ALA SEQRES 20 B 257 TRP GLU ALA TYR LEU SER ARG LEU GLY VAL MODRES 7OQM CSS A 304 CYS MODIFIED RESIDUE MODRES 7OQM ALY A 314 LYS MODIFIED RESIDUE MODRES 7OQM ALY B 314 LYS MODIFIED RESIDUE HET CSS A 304 7 HET ALY A 314 12 HET ALY B 314 12 HET GOL A 501 6 HET SO4 A 502 5 HET SO4 A 503 5 HET OMP A 504 24 HET U A 505 21 HET GOL B 501 6 HET SO4 B 502 5 HET SO4 B 503 5 HET U B 504 21 HETNAM CSS S-MERCAPTOCYSTEINE HETNAM ALY N(6)-ACETYLLYSINE HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETNAM OMP OROTIDINE-5'-MONOPHOSPHATE HETNAM U URIDINE-5'-MONOPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CSS C3 H7 N O2 S2 FORMUL 1 ALY 2(C8 H16 N2 O3) FORMUL 3 GOL 2(C3 H8 O3) FORMUL 4 SO4 4(O4 S 2-) FORMUL 6 OMP C10 H13 N2 O11 P FORMUL 7 U 2(C9 H13 N2 O9 P) FORMUL 12 HOH *706(H2 O) HELIX 1 AA1 SER A 226 ALA A 231 1 6 HELIX 2 AA2 HIS A 237 GLU A 251 1 15 HELIX 3 AA3 LEU A 262 GLY A 274 1 13 HELIX 4 AA4 PRO A 275 ILE A 277 5 3 HELIX 5 AA5 HIS A 283 LEU A 287 5 5 HELIX 6 AA6 THR A 291 GLU A 306 1 16 HELIX 7 AA7 ILE A 318 GLY A 328 1 11 HELIX 8 AA8 LYS A 332 ALA A 337 1 6 HELIX 9 AA9 SER A 348 LEU A 359 1 12 HELIX 10 AB1 GLY A 380 GLU A 392 1 13 HELIX 11 AB2 SER A 434 LYS A 441 1 8 HELIX 12 AB3 GLY A 450 SER A 455 1 6 HELIX 13 AB4 ASP A 458 GLY A 479 1 22 HELIX 14 AB5 SER B 226 ALA B 231 1 6 HELIX 15 AB6 HIS B 237 GLU B 251 1 15 HELIX 16 AB7 LEU B 262 GLY B 274 1 13 HELIX 17 AB8 PRO B 275 ILE B 277 5 3 HELIX 18 AB9 HIS B 283 LEU B 287 5 5 HELIX 19 AC1 THR B 291 GLU B 306 1 16 HELIX 20 AC2 ILE B 318 GLY B 328 1 11 HELIX 21 AC3 LYS B 332 ALA B 337 1 6 HELIX 22 AC4 SER B 348 LEU B 359 1 12 HELIX 23 AC5 GLY B 380 HIS B 393 1 14 HELIX 24 AC6 SER B 434 LYS B 441 1 8 HELIX 25 AC7 GLY B 450 SER B 455 1 6 HELIX 26 AC8 ASP B 458 GLY B 479 1 22 SHEET 1 AA1 9 LEU A 254 SER A 257 0 SHEET 2 AA1 9 MET A 279 THR A 282 1 O LYS A 281 N LEU A 256 SHEET 3 AA1 9 LEU A 308 PHE A 315 1 O ASP A 312 N THR A 282 SHEET 4 AA1 9 LEU A 339 HIS A 343 1 O HIS A 343 N PHE A 315 SHEET 5 AA1 9 GLY A 364 ILE A 368 1 O ILE A 368 N ALA A 342 SHEET 6 AA1 9 VAL A 397 ILE A 401 1 O VAL A 398 N CYS A 365 SHEET 7 AA1 9 LEU A 413 THR A 416 1 O LEU A 413 N PHE A 400 SHEET 8 AA1 9 ILE A 446 VAL A 449 1 O ILE A 446 N THR A 416 SHEET 9 AA1 9 LEU A 254 SER A 257 1 N CYS A 255 O ILE A 447 SHEET 1 AA2 9 LEU B 254 SER B 257 0 SHEET 2 AA2 9 MET B 279 THR B 282 1 O LYS B 281 N LEU B 256 SHEET 3 AA2 9 LEU B 308 PHE B 315 1 O ASP B 312 N THR B 282 SHEET 4 AA2 9 LEU B 339 HIS B 343 1 O HIS B 343 N PHE B 315 SHEET 5 AA2 9 GLY B 364 ILE B 368 1 O ILE B 368 N ALA B 342 SHEET 6 AA2 9 VAL B 397 ILE B 401 1 O VAL B 398 N CYS B 365 SHEET 7 AA2 9 LEU B 413 THR B 416 1 O LEU B 413 N PHE B 400 SHEET 8 AA2 9 ILE B 446 VAL B 449 1 O ILE B 446 N THR B 416 SHEET 9 AA2 9 LEU B 254 SER B 257 1 N CYS B 255 O ILE B 447 LINK C LYS A 303 N CSS A 304 1555 1555 1.34 LINK C CSS A 304 N HIS A 305 1555 1555 1.33 LINK C ARG A 313 N ALY A 314 1555 1555 1.33 LINK C ALY A 314 N PHE A 315 1555 1555 1.34 LINK C ARG B 313 N ALY B 314 1555 1555 1.34 LINK C ALY B 314 N PHE B 315 1555 1555 1.34 CRYST1 69.964 61.882 70.052 90.00 113.09 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014293 0.000000 0.006093 0.00000 SCALE2 0.000000 0.016160 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015518 0.00000