HEADER OXIDOREDUCTASE 04-JUN-21 7OR2 TITLE CRYSTAL STRUCTURE OF UDP-N-ACETYLENOLPYRUVOYLGLUCOSAMINE REDUCTASE TITLE 2 (MURB) FROM PSEUDOMONAS AERUGINOSA IN COMPLEX WITH FAD AND A PYRAZOLE TITLE 3 DERIVATIVE (FRAGMENT 4) COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-N-ACETYLENOLPYRUVOYLGLUCOSAMINE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UDP-N-ACETYLMURAMATE DEHYDROGENASE; COMPND 5 EC: 1.3.1.98; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA (STRAIN ATCC 15692 / DSM SOURCE 3 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1); SOURCE 4 ORGANISM_TAXID: 208964; SOURCE 5 STRAIN: ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 SOURCE 6 / 1C / PRS 101 / PAO1; SOURCE 7 GENE: MURB, PA2977; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PEPTIDOGLYCAN-BIOSYNTHESIS FRAGMENT BASED DRUG DISCOVERY, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.ACEBRON-GARCIA DE EULATE,T.L.BLUNDELL,S.Y.KIM,V.MENDES,C.ABELL REVDAT 4 31-JAN-24 7OR2 1 REMARK REVDAT 3 23-FEB-22 7OR2 1 JRNL REVDAT 2 09-FEB-22 7OR2 1 JRNL REMARK REVDAT 1 03-NOV-21 7OR2 0 JRNL AUTH M.ACEBRON-GARCIA-DE-EULATE,J.MAYOL-LLINAS,M.T.O.HOLLAND, JRNL AUTH 2 S.Y.KIM,K.P.BROWN,C.MARCHETTI,J.HESS,O.DI PIETRO,V.MENDES, JRNL AUTH 3 C.ABELL,R.A.FLOTO,A.G.COYNE,T.L.BLUNDELL JRNL TITL DISCOVERY OF NOVEL INHIBITORS OF URIDINE DIPHOSPHATE- N JRNL TITL 2 -ACETYLENOLPYRUVYLGLUCOSAMINE REDUCTASE (MURB) FROM JRNL TITL 3 PSEUDOMONAS AERUGINOSA , AN OPPORTUNISTIC INFECTIOUS AGENT JRNL TITL 4 CAUSING DEATH IN CYSTIC FIBROSIS PATIENTS. JRNL REF J.MED.CHEM. V. 65 2149 2022 JRNL REFN ISSN 0022-2623 JRNL PMID 35080396 JRNL DOI 10.1021/ACS.JMEDCHEM.1C01684 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.V.AFONINE,R.W.GROSSE-KUNSTLEVE,N.ECHOLS,J.J.HEADD, REMARK 1 AUTH 2 N.W.MORIARTY,M.MUSTYAKIMOV,T.C.TERWILLIGER,A.URZHUMTSEV, REMARK 1 AUTH 3 P.H.ZWART,P.D.ADAMS REMARK 1 TITL TOWARDS AUTOMATED CRYSTALLOGRAPHIC STRUCTURE REFINEMENT WITH REMARK 1 TITL 2 PHENIX.REFINE. REMARK 1 REF ACTA CRYSTALLOGR D BIOL V. 68 352 2012 REMARK 1 REF 2 CRYSTALLOGR REMARK 1 REFN ESSN 1399-0047 REMARK 1 DOI 10.1107/S0907444912001308 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 18114 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1829 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.6100 - 5.5300 1.00 1287 149 0.2010 0.2661 REMARK 3 2 5.5200 - 4.3800 1.00 1271 140 0.2019 0.2490 REMARK 3 3 4.3800 - 3.8300 1.00 1274 141 0.2059 0.2510 REMARK 3 4 3.8300 - 3.4800 1.00 1256 142 0.2307 0.2780 REMARK 3 5 3.4800 - 3.2300 0.99 1251 146 0.2413 0.2963 REMARK 3 6 3.2300 - 3.0400 0.98 1240 138 0.2759 0.2772 REMARK 3 7 3.0400 - 2.8900 0.99 1248 140 0.2711 0.2967 REMARK 3 8 2.8900 - 2.7600 0.99 1256 142 0.2946 0.3322 REMARK 3 9 2.7600 - 2.6600 0.99 1229 138 0.3011 0.3398 REMARK 3 10 2.6600 - 2.5700 0.99 1238 133 0.3036 0.3762 REMARK 3 11 2.5600 - 2.4800 0.98 1243 140 0.3281 0.3936 REMARK 3 12 2.4800 - 2.4100 0.98 1246 142 0.3479 0.4053 REMARK 3 13 2.4100 - 2.3500 0.99 1246 138 0.3638 0.3990 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.315 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 38.501 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 54.52 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 81.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2515 REMARK 3 ANGLE : 1.232 3443 REMARK 3 CHIRALITY : 0.057 395 REMARK 3 PLANARITY : 0.008 452 REMARK 3 DIHEDRAL : 26.078 367 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 176 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.4170 15.9524 -4.0282 REMARK 3 T TENSOR REMARK 3 T11: 0.6295 T22: 0.8058 REMARK 3 T33: 0.3759 T12: -0.0542 REMARK 3 T13: 0.0297 T23: -0.0826 REMARK 3 L TENSOR REMARK 3 L11: 3.4971 L22: 4.4544 REMARK 3 L33: 6.8336 L12: -0.3940 REMARK 3 L13: -1.6133 L23: 0.7774 REMARK 3 S TENSOR REMARK 3 S11: -0.1898 S12: 0.0571 S13: 0.0665 REMARK 3 S21: -0.3134 S22: 0.4123 S23: -0.6036 REMARK 3 S31: 0.0243 S32: 1.6662 S33: -0.2113 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 177 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.4586 10.4882 14.3445 REMARK 3 T TENSOR REMARK 3 T11: 0.9341 T22: 0.6997 REMARK 3 T33: 0.4504 T12: 0.1397 REMARK 3 T13: 0.0462 T23: -0.0264 REMARK 3 L TENSOR REMARK 3 L11: 3.9423 L22: 5.6652 REMARK 3 L33: 8.2463 L12: 1.8541 REMARK 3 L13: 1.2566 L23: -1.1390 REMARK 3 S TENSOR REMARK 3 S11: 0.2846 S12: -0.9206 S13: -0.2331 REMARK 3 S21: 1.3490 S22: -0.1348 S23: 0.3037 REMARK 3 S31: 0.6678 S32: 0.0353 S33: -0.1548 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 228 THROUGH 339 ) REMARK 3 ORIGIN FOR THE GROUP (A): -52.4548 2.7158 -6.3278 REMARK 3 T TENSOR REMARK 3 T11: 1.0272 T22: 0.5410 REMARK 3 T33: 0.5231 T12: -0.1332 REMARK 3 T13: 0.0069 T23: 0.0406 REMARK 3 L TENSOR REMARK 3 L11: 8.8542 L22: 7.0119 REMARK 3 L33: 5.0429 L12: -1.5380 REMARK 3 L13: -1.1357 L23: 1.3218 REMARK 3 S TENSOR REMARK 3 S11: -0.5530 S12: 0.2566 S13: -0.9392 REMARK 3 S21: 0.1395 S22: 0.1874 S23: 1.0720 REMARK 3 S31: 1.5545 S32: -0.7507 S33: 0.3107 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7OR2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1292115124. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.915 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18162 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 43.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 8.59 REMARK 200 R MERGE FOR SHELL (I) : 1.49700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4JB1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% GLYCEROL AND 22% PEG 1500, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.79667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 67.59333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 50.69500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 84.49167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 16.89833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 3 CG CD1 CD2 REMARK 470 GLU A 4 CG CD OE1 OE2 REMARK 470 LEU A 5 CG CD1 CD2 REMARK 470 GLU A 7 CG CD OE1 OE2 REMARK 470 HIS A 8 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 12 CG CD CE NZ REMARK 470 ARG A 22 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 24 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 30 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 37 CG CD OE1 OE2 REMARK 470 ARG A 43 NE CZ NH1 NH2 REMARK 470 GLU A 44 CG CD OE1 OE2 REMARK 470 ARG A 62 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 70 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 87 CG CD1 CD2 REMARK 470 GLU A 105 CG CD OE1 OE2 REMARK 470 ARG A 106 NE CZ NH1 NH2 REMARK 470 GLN A 127 CG CD OE1 NE2 REMARK 470 GLU A 155 CG CD OE1 OE2 REMARK 470 GLN A 159 CG CD OE1 NE2 REMARK 470 ARG A 162 CZ NH1 NH2 REMARK 470 ARG A 185 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 190 CG CD OE1 OE2 REMARK 470 ARG A 191 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 192 CG CD1 CD2 REMARK 470 HIS A 193 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 194 CG CD1 CD2 REMARK 470 ASP A 195 CG OD1 OD2 REMARK 470 TYR A 196 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A 201 CG CD OE1 NE2 REMARK 470 ILE A 208 CG1 CG2 CD1 REMARK 470 ARG A 214 NE CZ NH1 NH2 REMARK 470 LYS A 227 CG CD CE NZ REMARK 470 ASP A 247 CG OD1 OD2 REMARK 470 THR A 249 OG1 CG2 REMARK 470 GLN A 250 CG CD OE1 NE2 REMARK 470 GLU A 252 CG CD OE1 OE2 REMARK 470 ARG A 253 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 254 CG CD1 CD2 REMARK 470 ARG A 255 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 256 CG CD OE1 NE2 REMARK 470 PHE A 258 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 261 CG CD1 CD2 REMARK 470 ASP A 268 CG OD1 OD2 REMARK 470 LYS A 272 CG CD CE NZ REMARK 470 LYS A 281 CG CD CE NZ REMARK 470 ASN A 304 CG OD1 ND2 REMARK 470 GLN A 312 CG CD OE1 NE2 REMARK 470 ARG A 319 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 322 CG CD OE1 OE2 REMARK 470 ARG A 325 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 326 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 327 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 338 CG CD1 CD2 REMARK 470 TYR A 339 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 39 CA - CB - CG ANGL. DEV. = 16.2 DEGREES REMARK 500 ARG A 314 NE - CZ - NH1 ANGL. DEV. = -6.5 DEGREES REMARK 500 ARG A 314 NE - CZ - NH2 ANGL. DEV. = 3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 4 68.06 -108.19 REMARK 500 GLU A 44 10.11 -69.35 REMARK 500 ALA A 83 -72.71 -57.27 REMARK 500 LEU A 116 14.59 56.77 REMARK 500 PRO A 118 -177.68 -69.24 REMARK 500 TYR A 132 47.00 39.03 REMARK 500 SER A 142 160.30 179.11 REMARK 500 GLU A 173 61.97 -105.84 REMARK 500 TYR A 196 76.24 38.51 REMARK 500 ILE A 208 61.72 36.62 REMARK 500 GLN A 256 31.01 -88.82 REMARK 500 ASP A 260 -71.38 -54.59 REMARK 500 LEU A 261 65.42 34.27 REMARK 500 GLN A 297 -64.48 -121.35 REMARK 500 REMARK 500 REMARK: NULL DBREF 7OR2 A 3 339 UNP Q9HZM7 MURB_PSEAE 3 339 SEQADV 7OR2 SER A 0 UNP Q9HZM7 EXPRESSION TAG SEQADV 7OR2 MET A 1 UNP Q9HZM7 EXPRESSION TAG SEQADV 7OR2 SER A 2 UNP Q9HZM7 EXPRESSION TAG SEQRES 1 A 340 SER MET SER LEU GLU LEU GLN GLU HIS CYS SER LEU LYS SEQRES 2 A 340 PRO TYR ASN THR PHE GLY ILE ASP VAL ARG ALA ARG LEU SEQRES 3 A 340 LEU ALA HIS ALA ARG ASP GLU ALA ASP VAL ARG GLU ALA SEQRES 4 A 340 LEU ALA LEU ALA ARG GLU ARG GLY LEU PRO LEU LEU VAL SEQRES 5 A 340 ILE GLY GLY GLY SER ASN LEU LEU LEU THR ARG ASP VAL SEQRES 6 A 340 GLU ALA LEU VAL LEU ARG MET ALA SER GLN GLY ARG ARG SEQRES 7 A 340 ILE VAL SER ASP ALA ALA ASP SER VAL LEU VAL GLU ALA SEQRES 8 A 340 GLU ALA GLY GLU ALA TRP ASP PRO PHE VAL GLN TRP SER SEQRES 9 A 340 LEU GLU ARG GLY LEU ALA GLY LEU GLU ASN LEU SER LEU SEQRES 10 A 340 ILE PRO GLY THR VAL GLY ALA ALA PRO MET GLN ASN ILE SEQRES 11 A 340 GLY ALA TYR GLY VAL GLU LEU LYS ASP VAL PHE ASP SER SEQRES 12 A 340 LEU THR ALA LEU ASP ARG GLN ASP GLY THR LEU ARG GLU SEQRES 13 A 340 PHE ASP ARG GLN ALA CYS ARG PHE GLY TYR ARG ASP SER SEQRES 14 A 340 LEU PHE LYS GLN GLU PRO ASP ARG TRP LEU ILE LEU ARG SEQRES 15 A 340 VAL ARG LEU ARG LEU THR ARG ARG GLU ARG LEU HIS LEU SEQRES 16 A 340 ASP TYR GLY PRO VAL ARG GLN ARG LEU GLU GLU GLU GLY SEQRES 17 A 340 ILE ALA SER PRO THR ALA ARG ASP VAL SER ARG VAL ILE SEQRES 18 A 340 CYS ALA ILE ARG ARG GLU LYS LEU PRO ASP PRO ALA VAL SEQRES 19 A 340 LEU GLY ASN ALA GLY SER PHE PHE LYS ASN PRO LEU VAL SEQRES 20 A 340 ASP ALA THR GLN ALA GLU ARG LEU ARG GLN ALA PHE PRO SEQRES 21 A 340 ASP LEU VAL GLY TYR PRO GLN ALA ASP GLY ARG LEU LYS SEQRES 22 A 340 LEU ALA ALA GLY TRP LEU ILE ASP LYS GLY GLY TRP LYS SEQRES 23 A 340 GLY PHE ARG ASP GLY PRO VAL GLY VAL HIS ALA GLN GLN SEQRES 24 A 340 ALA LEU VAL LEU VAL ASN HIS GLY GLY ALA THR GLY ALA SEQRES 25 A 340 GLN VAL ARG ALA LEU ALA GLU ARG ILE GLN GLU ASP VAL SEQRES 26 A 340 ARG ARG ARG PHE GLY VAL GLU LEU GLU PRO GLU PRO ASN SEQRES 27 A 340 LEU TYR HET FAD A 401 53 HET 9FH A 402 15 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM 9FH 5-METHYL-1-PHENYL-PYRAZOLE-4-CARBOXYLIC ACID FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 9FH C11 H10 N2 O2 FORMUL 4 HOH *8(H2 O) HELIX 1 AA1 LYS A 12 ASN A 15 5 4 HELIX 2 AA2 ASP A 31 ARG A 45 1 15 HELIX 3 AA3 ALA A 95 GLY A 107 1 13 HELIX 4 AA4 LEU A 111 SER A 115 5 5 HELIX 5 AA5 ALA A 123 ASN A 128 1 6 HELIX 6 AA6 LEU A 136 VAL A 139 1 4 HELIX 7 AA7 GLN A 159 ARG A 162 5 4 HELIX 8 AA8 SER A 168 GLU A 173 1 6 HELIX 9 AA9 GLY A 197 GLU A 204 1 8 HELIX 10 AB1 THR A 212 LEU A 228 1 17 HELIX 11 AB2 ASP A 247 GLN A 256 1 10 HELIX 12 AB3 ALA A 274 GLY A 282 1 9 HELIX 13 AB4 THR A 309 GLY A 329 1 21 SHEET 1 AA1 4 GLN A 6 SER A 10 0 SHEET 2 AA1 4 ARG A 22 ALA A 29 -1 O LEU A 26 N GLN A 6 SHEET 3 AA1 4 VAL A 64 MET A 71 1 O VAL A 64 N ARG A 22 SHEET 4 AA1 4 LEU A 49 ILE A 52 1 N ILE A 52 O MET A 71 SHEET 1 AA2 2 LEU A 58 LEU A 60 0 SHEET 2 AA2 2 ASN A 337 TYR A 339 1 O ASN A 337 N LEU A 59 SHEET 1 AA3 5 ARG A 76 ASP A 81 0 SHEET 2 AA3 5 SER A 85 GLU A 91 -1 O GLU A 89 N ARG A 77 SHEET 3 AA3 5 TRP A 177 THR A 187 -1 O LEU A 186 N VAL A 86 SHEET 4 AA3 5 PHE A 140 ASP A 147 -1 N SER A 142 O ARG A 183 SHEET 5 AA3 5 LEU A 153 ASP A 157 -1 O PHE A 156 N LEU A 143 SHEET 1 AA4 2 GLY A 130 ALA A 131 0 SHEET 2 AA4 2 VAL A 134 GLU A 135 -1 O VAL A 134 N ALA A 131 SHEET 1 AA5 3 LEU A 245 VAL A 246 0 SHEET 2 AA5 3 LEU A 271 LEU A 273 -1 O LEU A 271 N VAL A 246 SHEET 3 AA5 3 GLY A 263 PRO A 265 -1 N TYR A 264 O LYS A 272 SHEET 1 AA6 3 ARG A 288 ASP A 289 0 SHEET 2 AA6 3 VAL A 292 VAL A 294 -1 O VAL A 292 N ASP A 289 SHEET 3 AA6 3 LEU A 302 ASN A 304 -1 O VAL A 303 N GLY A 293 CRYST1 87.220 87.220 101.390 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011465 0.006619 0.000000 0.00000 SCALE2 0.000000 0.013239 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009863 0.00000