HEADER ANTIMICROBIAL PROTEIN 08-JUN-21 7OSC TITLE SOLUTION STRUCTURE OF ANTIMICROBIAL PEPTIDE CATHELICIDIN-1 PCDODE FROM TITLE 2 SPERM WHALE PHYSETER CATODON COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATHELICIDIN-1-LIKE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHYSETER MACROCEPHALUS; SOURCE 3 ORGANISM_COMMON: SPERM WHALE, PHYSETER CATODON; SOURCE 4 ORGANISM_TAXID: 9755; SOURCE 5 GENE: LOC102973809; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS ANTIMICROBIAL PROTEIN, CATHELICIDIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.A.MIRONOV,M.Y.MYSHKIN,Z.O.SHENKAREV REVDAT 1 15-SEP-21 7OSC 0 JRNL AUTH I.A.BOLOSOV,P.V.PANTELEEV,S.V.SYCHEV,S.V.SUKHANOV, JRNL AUTH 2 P.A.MIRONOV,M.Y.MYSHKIN,Z.O.SHENKAREV,T.V.OVCHINNIKOVA JRNL TITL DODECAPEPTIDE CATHELICIDINS OF CETARTIODACTYLA: STRUCTURE, JRNL TITL 2 MECHANISM OF ANTIMICROBIAL ACTION, AND SYNERGISTIC JRNL TITL 3 INTERACTION WITH OTHER CATHELICIDINS JRNL REF FRONT MICROBIOL V. 12 2249 2021 JRNL REFN ESSN 1664-302X JRNL DOI 10.3389/FMICB.2021.725526 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.98.13 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7OSC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1292116232. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 4.4 REMARK 210 IONIC STRENGTH : 0.01 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.6 MM PCDODE, 5 % [U-100% 2H] REMARK 210 D2O, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H TOCSY; 2D 1H-1H NOESY; REMARK 210 2D 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CARA 1.9.1.7, CYANA 3.98.13, REMARK 210 TOPSPIN 4.0.7 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 12 83.11 -151.86 REMARK 500 1 CYS A 15 94.21 -61.09 REMARK 500 2 ARG A 12 82.46 -151.61 REMARK 500 2 CYS A 15 95.72 -60.50 REMARK 500 3 ARG A 12 82.59 -151.70 REMARK 500 3 CYS A 15 96.25 -59.52 REMARK 500 4 ARG A 12 82.93 -151.67 REMARK 500 4 CYS A 15 96.29 -60.76 REMARK 500 5 ARG A 12 82.49 -151.59 REMARK 500 5 CYS A 15 95.99 -60.14 REMARK 500 6 ARG A 12 82.63 -151.64 REMARK 500 6 CYS A 15 95.70 -59.99 REMARK 500 7 ARG A 12 81.14 -151.76 REMARK 500 7 CYS A 15 97.99 -58.10 REMARK 500 8 ARG A 12 82.85 -151.95 REMARK 500 8 CYS A 15 93.82 -61.52 REMARK 500 9 ARG A 12 83.03 -151.83 REMARK 500 9 CYS A 15 93.88 -61.42 REMARK 500 10 ARG A 12 83.04 -151.62 REMARK 500 10 CYS A 15 96.20 -61.00 REMARK 500 11 ARG A 12 83.02 -151.85 REMARK 500 11 CYS A 15 94.69 -61.15 REMARK 500 12 ARG A 12 82.94 -151.84 REMARK 500 12 CYS A 15 94.65 -61.06 REMARK 500 13 ARG A 12 82.75 -151.69 REMARK 500 13 CYS A 15 95.94 -60.34 REMARK 500 14 ARG A 12 83.06 -151.87 REMARK 500 14 CYS A 15 95.89 -61.62 REMARK 500 15 ARG A 12 82.58 -151.66 REMARK 500 15 CYS A 15 95.44 -59.88 REMARK 500 16 ARG A 12 83.09 -151.76 REMARK 500 16 CYS A 15 95.87 -61.04 REMARK 500 17 ARG A 12 83.07 -151.90 REMARK 500 17 CYS A 15 94.31 -61.04 REMARK 500 18 ARG A 12 82.89 -151.98 REMARK 500 18 CYS A 15 94.03 -61.16 REMARK 500 19 ARG A 12 81.36 -151.36 REMARK 500 20 ARG A 12 82.91 -151.91 REMARK 500 20 CYS A 15 93.86 -61.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34633 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF ANTIMICROBIAL PEPTIDE CATHELICIDIN-1 PCDODE REMARK 900 FROM SPERM WHALE PHYSETER CATODON DBREF1 7OSC A 1 24 UNP A0A2Y9FJE4_PHYMC DBREF2 7OSC A A0A2Y9FJE4 144 167 SEQRES 1 A 24 PCA ILE CYS ARG ILE ILE VAL VAL ARG VAL CYS ARG PRO SEQRES 2 A 24 ILE CYS ARG ILE THR VAL ILE ARG VAL CYS SER MODRES 7OSC PCA A 1 GLN MODIFIED RESIDUE HET PCA A 1 14 HETNAM PCA PYROGLUTAMIC ACID FORMUL 1 PCA C5 H7 N O3 SHEET 1 AA1 2 ILE A 2 CYS A 11 0 SHEET 2 AA1 2 CYS A 15 SER A 24 -1 O ILE A 20 N ILE A 6 SSBOND 1 CYS A 3 CYS A 23 1555 1555 1.98 SSBOND 2 CYS A 11 CYS A 15 1555 1555 1.92 LINK C PCA A 1 N ILE A 2 1555 1555 1.33 CISPEP 1 ARG A 12 PRO A 13 1 0.00 CISPEP 2 ARG A 12 PRO A 13 2 -0.01 CISPEP 3 ARG A 12 PRO A 13 3 0.04 CISPEP 4 ARG A 12 PRO A 13 4 -0.10 CISPEP 5 ARG A 12 PRO A 13 5 0.00 CISPEP 6 ARG A 12 PRO A 13 6 0.04 CISPEP 7 ARG A 12 PRO A 13 7 0.03 CISPEP 8 ARG A 12 PRO A 13 8 0.01 CISPEP 9 ARG A 12 PRO A 13 9 -0.06 CISPEP 10 ARG A 12 PRO A 13 10 0.05 CISPEP 11 ARG A 12 PRO A 13 11 -0.05 CISPEP 12 ARG A 12 PRO A 13 12 0.09 CISPEP 13 ARG A 12 PRO A 13 13 -0.03 CISPEP 14 ARG A 12 PRO A 13 14 0.00 CISPEP 15 ARG A 12 PRO A 13 15 0.02 CISPEP 16 ARG A 12 PRO A 13 16 -0.01 CISPEP 17 ARG A 12 PRO A 13 17 -0.07 CISPEP 18 ARG A 12 PRO A 13 18 -0.04 CISPEP 19 ARG A 12 PRO A 13 19 -0.06 CISPEP 20 ARG A 12 PRO A 13 20 0.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 HETATM 1 N PCA A 1 0.000 0.000 0.000 1.00 0.00 N HETATM 2 CA PCA A 1 1.438 0.000 0.000 1.00 0.00 C HETATM 3 CB PCA A 1 1.774 -0.506 1.396 1.00 0.00 C HETATM 4 CG PCA A 1 0.604 -0.027 2.251 1.00 0.00 C HETATM 5 CD PCA A 1 -0.536 0.013 1.266 1.00 0.00 C HETATM 6 OE PCA A 1 -1.720 0.091 1.536 1.00 0.00 O HETATM 7 C PCA A 1 2.041 -0.867 -1.116 1.00 0.00 C HETATM 8 O PCA A 1 3.043 -0.540 -1.753 1.00 0.00 O HETATM 9 H PCA A 1 -0.576 0.000 -0.834 1.00 0.00 H HETATM 10 HA PCA A 1 1.763 1.037 -0.142 1.00 0.00 H HETATM 11 HB2 PCA A 1 1.817 -1.603 1.413 1.00 0.00 H HETATM 12 HB3 PCA A 1 2.736 -0.134 1.762 1.00 0.00 H HETATM 13 HG2 PCA A 1 0.393 -0.720 3.069 1.00 0.00 H HETATM 14 HG3 PCA A 1 0.777 0.981 2.640 1.00 0.00 H