HEADER TRANSFERASE 09-JUN-21 7OSO TITLE THE CRYSTAL STRUCTURE OF ERWINIA TASMANIENSIS LEVANSUCRASE IN COMPLEX TITLE 2 WITH (S)-1,2,4-BUTANENTRIOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEVANSUCRASE (BETA-D-FRUCTOFURANOSYL TRANSFERASE); COMPND 3 CHAIN: A; COMPND 4 EC: 2.4.1.10; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ERWINIA TASMANIENSIS (STRAIN DSM 17950 / CIP SOURCE 3 109463 / ET1/99); SOURCE 4 ORGANISM_TAXID: 465817; SOURCE 5 STRAIN: DSM 17950 / CIP 109463 / ET1/99; SOURCE 6 GENE: LSC, ETA_34670; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS FRUCTOSYLTRANSFERASE, LEVAN, FOS, TRANSFRUCTOSYLATION, FRUCTO- KEYWDS 2 OLIGOSACCHARIDES, OLIGOFRUCTANS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR I.POLSINELLI,M.SALOMONE-STAGNI,S.BENINI REVDAT 3 07-FEB-24 7OSO 1 REMARK REVDAT 2 05-JUL-23 7OSO 1 JRNL REVDAT 1 22-JUN-22 7OSO 0 JRNL AUTH I.POLSINELLI,M.SALOMONE-STAGNI,S.BENINI JRNL TITL ERWINIA TASMANIENSIS LEVANSUCRASE SHOWS ENANTIOMER SELECTION JRNL TITL 2 FOR (S)-1,2,4-BUTANETRIOL. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 78 289 2022 JRNL REFN ESSN 2053-230X JRNL PMID 35924596 JRNL DOI 10.1107/S2053230X2200680X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH I.POLSINELLI,R.CALIANDRO,N.DEMITRI,S.BENINI REMARK 1 TITL THE STRUCTURE OF SUCROSE-SOAKED LEVANSUCRASE CRYSTALS FROM REMARK 1 TITL 2 ERWINIA TASMANIENSIS REVEALS A BINDING POCKET FOR REMARK 1 TITL 3 LEVANBIOSE. REMARK 1 REF INT J MOL SCI V. 21 2019 REMARK 1 REFN ESSN 1422-0067 REMARK 1 DOI 10.3390/IJMS21010083 REMARK 1 REFERENCE 2 REMARK 1 AUTH I.POLSINELLI,R.CALIANDRO,M.SALOMONE-STAGNI,N.DEMITRI, REMARK 1 AUTH 2 M.REJZEK,R.A.FIELD,S.BENINI REMARK 1 TITL COMPARISON OF THE LEVANSUCRASE FROM THE EPIPHYTE ERWINIA REMARK 1 TITL 2 TASMANIENSIS VS ITS HOMOLOGUE FROM THE PHYTOPATHOGEN ERWINIA REMARK 1 TITL 3 AMYLOVORA. REMARK 1 REF INT J BIOL MACROMOL V. 127 496 2019 REMARK 1 REFN ISSN 1879-0003 REMARK 1 DOI 10.1016/J.IJBIOMAC.2019.01.074 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 94247 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.134 REMARK 3 R VALUE (WORKING SET) : 0.133 REMARK 3 FREE R VALUE : 0.164 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4939 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6754 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.3320 REMARK 3 BIN FREE R VALUE SET COUNT : 335 REMARK 3 BIN FREE R VALUE : 0.3610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3206 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 517 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.95 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.34000 REMARK 3 B22 (A**2) : -0.34000 REMARK 3 B33 (A**2) : 0.69000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.047 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.047 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.035 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.117 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.980 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.975 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3370 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2965 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4613 ; 1.468 ; 1.649 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6885 ; 1.425 ; 1.577 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 429 ; 7.346 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 170 ;30.105 ;22.588 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 501 ;10.621 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;18.062 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 438 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3872 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 743 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6334 ; 1.810 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7OSO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1292116376. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 189742 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 45.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4D47 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3000 15%, 1,2,4-BUTANETRIOL (CAS REMARK 280 3068-00-6) 20%, NDSB 256 1%, 2.5 MM MANGANESE(II) CHLORIDE REMARK 280 TETRAHYDRATE, 2.5 MM COBALT(II) CHLORIDE HEXAHYDRATE, 2.5 MM REMARK 280 NICKEL(II) CHLORIDE HEXAHYDRATE, 2.5 MM ZINC ACETATE DIHYDRATE), REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.50800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 63.85650 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 63.85650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 15.25400 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 63.85650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 63.85650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 45.76200 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 63.85650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.85650 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 15.25400 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 63.85650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.85650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 45.76200 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 30.50800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -90.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 4 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN A 5 CG OD1 ND2 REMARK 470 LYS A 7 CG CD CE NZ REMARK 470 ASP A 32 CG OD1 OD2 REMARK 470 GLU A 41 OE1 OE2 REMARK 470 GLU A 83 CG CD OE1 OE2 REMARK 470 ASN A 84 CG OD1 ND2 REMARK 470 LYS A 163 NZ REMARK 470 GLU A 169 CG CD OE1 OE2 REMARK 470 LYS A 188 NZ REMARK 470 LYS A 214 CE NZ REMARK 470 GLU A 231 CG CD OE1 OE2 REMARK 470 LYS A 263 CE NZ REMARK 470 GLU A 269 CG CD OE1 OE2 REMARK 470 GLN A 326 OE1 NE2 REMARK 470 GLU A 372 CD OE1 OE2 REMARK 470 GLU A 374 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 51 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 45 -103.12 -143.65 REMARK 500 ASN A 74 41.50 -96.17 REMARK 500 THR A 152 96.85 73.77 REMARK 500 ASP A 203 63.96 75.88 REMARK 500 VAL A 282 -57.28 -125.68 REMARK 500 ARG A 288 59.77 36.72 REMARK 500 SER A 336 -39.35 74.07 REMARK 500 ASP A 367 -84.98 -103.88 REMARK 500 ASP A 367 -87.64 -103.88 REMARK 500 TRP A 371 -100.83 -118.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1110 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A1111 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A1112 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A1113 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A1114 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH A1115 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH A1116 DISTANCE = 6.64 ANGSTROMS REMARK 525 HOH A1117 DISTANCE = 6.88 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 52 OD2 REMARK 620 2 ASP A 54 OD2 113.8 REMARK 620 3 ASP A 56 OD2 112.4 109.8 REMARK 620 4 HOH A 942 O 106.5 105.9 108.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 140 OD1 REMARK 620 2 GLU A 141 OE2 96.7 REMARK 620 3 HIS A 178 ND1 93.6 61.8 REMARK 620 4 HOH A 974 O 112.9 102.0 151.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 305 ND1 REMARK 620 2 ASP A 317 OD1 106.8 REMARK 620 3 ASP A 317 OD2 113.4 54.7 REMARK 620 4 HOH A 912 O 100.4 145.6 95.3 REMARK 620 5 HOH A 978 O 109.7 84.9 127.3 105.5 REMARK 620 N 1 2 3 4 DBREF 7OSO A 4 415 UNP B2VCC3 B2VCC3_ERWT9 4 415 SEQRES 1 A 412 PHE ASN TYR LYS PRO THR PRO TRP THR ARG ALA ASP ALA SEQRES 2 A 412 LEU LYS VAL HIS SER ASP ASP PRO THR THR THR GLN PRO SEQRES 3 A 412 LEU VAL ASP VAL ALA PHE PRO VAL MET SER GLU GLU VAL SEQRES 4 A 412 PHE ILE TRP ASP THR MET PRO LEU ARG ASP PHE ASP GLY SEQRES 5 A 412 ASP ILE VAL SER VAL ASN GLY TRP CYS VAL ILE PHE THR SEQRES 6 A 412 LEU THR ALA ASP ARG ASN THR ASN ASN PRO ASP PHE GLN SEQRES 7 A 412 ASP GLU ASN GLY ASN TYR ASP ILE LYS ARG ASP TRP GLU SEQRES 8 A 412 ASP ARG HIS GLY ARG ALA ARG ILE CYS TYR TRP TYR SER SEQRES 9 A 412 ARG THR GLY LYS ASP TRP ILE PHE GLY GLY ARG VAL MET SEQRES 10 A 412 ALA GLU GLY VAL SER PRO THR THR ARG GLU TRP ALA GLY SEQRES 11 A 412 THR PRO ILE LEU LEU ASN ASP GLU GLY ASP ILE ASP LEU SEQRES 12 A 412 TYR TYR THR CYS VAL THR PRO GLY ALA THR ILE ALA LYS SEQRES 13 A 412 VAL ARG GLY LYS ILE VAL THR SER ASP GLU GLY VAL SER SEQRES 14 A 412 LEU GLU GLY PHE GLN HIS VAL LYS SER LEU PHE SER ALA SEQRES 15 A 412 ASP GLY LYS ILE TYR GLN THR GLU GLU GLN ASN ALA TYR SEQRES 16 A 412 TRP ASN PHE ARG ASP PRO SER PRO PHE ILE ASP LYS ASN SEQRES 17 A 412 ASP GLY LYS LEU TYR MET LEU PHE GLU GLY ASN VAL ALA SEQRES 18 A 412 GLY SER ARG GLY THR HIS GLU ILE THR GLN GLU ASP MET SEQRES 19 A 412 GLY SER VAL PRO PRO GLY TYR GLU ASN VAL GLY GLY ALA SEQRES 20 A 412 ARG TYR GLN VAL GLY CYS ILE GLY LEU ALA VAL ALA LYS SEQRES 21 A 412 ASP LEU SER GLY ASP GLU TRP GLU ILE LEU PRO PRO LEU SEQRES 22 A 412 ILE THR ALA VAL GLY VAL ASN ASP GLN THR GLU ARG PRO SEQRES 23 A 412 HIS PHE VAL PHE GLN GLU GLY LYS TYR TYR LEU PHE THR SEQRES 24 A 412 ILE SER HIS LYS TYR THR PHE ALA ASP ASN LEU THR GLY SEQRES 25 A 412 PRO ASP GLY VAL TYR GLY PHE VAL SER ASN GLN LEU THR SEQRES 26 A 412 GLY PRO TYR THR PRO MET ASN SER SER GLY LEU VAL LEU SEQRES 27 A 412 GLY ASN PRO SER SER GLN PRO PHE GLN THR TYR SER HIS SEQRES 28 A 412 TYR VAL MET PRO ASN GLY LEU VAL THR SER PHE ILE ASP SEQRES 29 A 412 SER VAL PRO TRP GLU GLY GLU LYS PHE ARG ILE GLY GLY SEQRES 30 A 412 THR GLU ALA PRO THR VAL LYS ILE LEU LEU LYS GLY ASP SEQRES 31 A 412 ARG SER PHE VAL VAL ASP SER PHE ASP TYR GLY TYR ILE SEQRES 32 A 412 PRO ALA MET LYS ASP ILE ILE LEU LYS HET ZN A 501 1 HET ZN A 502 1 HET ZN A 503 1 HET 0V1 A 504 7 HETNAM ZN ZINC ION HETNAM 0V1 (2~{S})-BUTANE-1,2,4-TRIOL HETSYN 0V1 (S)-1,2,4-BUTANENTRIOL FORMUL 2 ZN 3(ZN 2+) FORMUL 5 0V1 C4 H10 O3 FORMUL 6 HOH *517(H2 O) HELIX 1 AA1 THR A 12 LEU A 17 1 6 HELIX 2 AA2 ASP A 23 THR A 27 5 5 HELIX 3 AA3 ASN A 77 GLN A 81 5 5 HELIX 4 AA4 ASP A 88 ASP A 95 1 8 HELIX 5 AA5 ARG A 96 ALA A 100 5 5 HELIX 6 AA6 THR A 233 GLY A 238 1 6 HELIX 7 AA7 GLY A 249 GLN A 253 5 5 HELIX 8 AA8 HIS A 305 PHE A 309 5 5 SHEET 1 AA1 5 THR A 9 PRO A 10 0 SHEET 2 AA1 5 TRP A 270 THR A 278 1 O LEU A 276 N THR A 9 SHEET 3 AA1 5 GLY A 255 ALA A 262 -1 N LEU A 259 O LEU A 273 SHEET 4 AA1 5 LEU A 215 ASN A 222 -1 N LEU A 215 O ALA A 262 SHEET 5 AA1 5 ARG A 202 ILE A 208 -1 N PHE A 207 O TYR A 216 SHEET 1 AA2 4 VAL A 42 PRO A 49 0 SHEET 2 AA2 4 CYS A 64 ASP A 72 -1 O PHE A 67 N MET A 48 SHEET 3 AA2 4 ARG A 101 SER A 107 -1 O SER A 107 N CYS A 64 SHEET 4 AA2 4 ILE A 114 ARG A 118 -1 O GLY A 116 N TYR A 104 SHEET 1 AA3 2 VAL A 58 VAL A 60 0 SHEET 2 AA3 2 LYS A 410 ILE A 412 1 O ILE A 412 N SER A 59 SHEET 1 AA4 4 ARG A 129 LEU A 137 0 SHEET 2 AA4 4 ASP A 143 VAL A 151 -1 O ASP A 145 N ILE A 136 SHEET 3 AA4 4 ALA A 155 SER A 167 -1 O THR A 156 N CYS A 150 SHEET 4 AA4 4 GLY A 170 GLU A 174 -1 O SER A 172 N VAL A 165 SHEET 1 AA5 4 ARG A 129 LEU A 137 0 SHEET 2 AA5 4 ASP A 143 VAL A 151 -1 O ASP A 145 N ILE A 136 SHEET 3 AA5 4 ALA A 155 SER A 167 -1 O THR A 156 N CYS A 150 SHEET 4 AA5 4 VAL A 179 SER A 184 -1 O LYS A 180 N LYS A 159 SHEET 1 AA6 4 GLU A 287 GLN A 294 0 SHEET 2 AA6 4 LYS A 297 SER A 304 -1 O PHE A 301 N HIS A 290 SHEET 3 AA6 4 GLY A 318 SER A 324 -1 O TYR A 320 N THR A 302 SHEET 4 AA6 4 THR A 332 PRO A 333 -1 O THR A 332 N VAL A 323 SHEET 1 AA7 4 GLU A 287 GLN A 294 0 SHEET 2 AA7 4 LYS A 297 SER A 304 -1 O PHE A 301 N HIS A 290 SHEET 3 AA7 4 GLY A 318 SER A 324 -1 O TYR A 320 N THR A 302 SHEET 4 AA7 4 LEU A 339 GLY A 342 -1 O VAL A 340 N VAL A 319 SHEET 1 AA8 3 THR A 351 VAL A 356 0 SHEET 2 AA8 3 LEU A 361 PRO A 370 -1 O THR A 363 N TYR A 355 SHEET 3 AA8 3 PHE A 376 GLU A 382 -1 O THR A 381 N ILE A 366 SHEET 1 AA9 4 THR A 351 VAL A 356 0 SHEET 2 AA9 4 LEU A 361 PRO A 370 -1 O THR A 363 N TYR A 355 SHEET 3 AA9 4 PRO A 384 LYS A 391 -1 O VAL A 386 N VAL A 362 SHEET 4 AA9 4 ARG A 394 TYR A 403 -1 O PHE A 401 N THR A 385 LINK OD2 ASP A 52 ZN ZN A 502 1555 1555 1.97 LINK OD2 ASP A 54 ZN ZN A 502 1555 1555 2.06 LINK OD2 ASP A 56 ZN ZN A 502 1555 1555 1.93 LINK OD1 ASP A 140 ZN ZN A 501 1555 1555 2.01 LINK OE2 GLU A 141 ZN ZN A 501 1555 1555 1.94 LINK ND1 HIS A 178 ZN ZN A 501 1555 4554 2.00 LINK ND1 HIS A 305 ZN ZN A 503 1555 1555 2.13 LINK OD1 ASP A 317 ZN ZN A 503 1555 1555 2.58 LINK OD2 ASP A 317 ZN ZN A 503 1555 1555 2.04 LINK ZN ZN A 501 O HOH A 974 1555 1555 2.22 LINK ZN ZN A 502 O HOH A 942 1555 1555 2.16 LINK ZN ZN A 503 O HOH A 912 1555 1555 1.94 LINK ZN ZN A 503 O HOH A 978 1555 1555 2.25 CISPEP 1 THR A 152 PRO A 153 0 3.34 CISPEP 2 GLY A 329 PRO A 330 0 4.96 CRYST1 127.713 127.713 61.016 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007830 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007830 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016389 0.00000