HEADER OXIDOREDUCTASE 09-JUN-21 7OSQ TITLE CRYSTAL STRUCTURE OF UDP-N-ACETYLENOLPYRUVOYLGLUCOSAMINE REDUCTASE TITLE 2 (MURB) FROM PSEUDOMONAS AERUGINOSA IN COMPLEX WITH FAD AND A PYRAZOLE TITLE 3 DERIVATIVE (FRAGMENT 18) COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-N-ACETYLENOLPYRUVOYLGLUCOSAMINE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UDP-N-ACETYLMURAMATE DEHYDROGENASE; COMPND 5 EC: 1.3.1.98; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA (STRAIN ATCC 15692 / DSM SOURCE 3 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1); SOURCE 4 ORGANISM_TAXID: 208964; SOURCE 5 STRAIN: ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 SOURCE 6 / 1C / PRS 101 / PAO1; SOURCE 7 GENE: MURB, PA2977; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PEPTIDOGLYCAN-BIOSYNTHESIS, FRAGMENT BASED DRUG DISCOVERY, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.ACEBRON-GARCIA DE EULATE,J.MAYOL-LLINAS,T.L.BLUNDELL,S.Y.KIM, AUTHOR 2 V.MENDES,C.ABELL REVDAT 4 31-JAN-24 7OSQ 1 REMARK REVDAT 3 23-FEB-22 7OSQ 1 JRNL REVDAT 2 09-FEB-22 7OSQ 1 JRNL REMARK REVDAT 1 03-NOV-21 7OSQ 0 JRNL AUTH M.ACEBRON-GARCIA-DE-EULATE,J.MAYOL-LLINAS,M.T.O.HOLLAND, JRNL AUTH 2 S.Y.KIM,K.P.BROWN,C.MARCHETTI,J.HESS,O.DI PIETRO,V.MENDES, JRNL AUTH 3 C.ABELL,R.A.FLOTO,A.G.COYNE,T.L.BLUNDELL JRNL TITL DISCOVERY OF NOVEL INHIBITORS OF URIDINE DIPHOSPHATE- N JRNL TITL 2 -ACETYLENOLPYRUVYLGLUCOSAMINE REDUCTASE (MURB) FROM JRNL TITL 3 PSEUDOMONAS AERUGINOSA , AN OPPORTUNISTIC INFECTIOUS AGENT JRNL TITL 4 CAUSING DEATH IN CYSTIC FIBROSIS PATIENTS. JRNL REF J.MED.CHEM. V. 65 2149 2022 JRNL REFN ISSN 0022-2623 JRNL PMID 35080396 JRNL DOI 10.1021/ACS.JMEDCHEM.1C01684 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.V.AFONINE,R.W.GROSSE-KUNSTLEVE,N.ECHOLS,J.J.HEADD, REMARK 1 AUTH 2 N.W.MORIARTY,M.MUSTYAKIMOV,T.C.TERWILLIGER,A.URZHUMTSEV, REMARK 1 AUTH 3 P.H.ZWART,P.D.ADAMS REMARK 1 TITL TOWARDS AUTOMATED CRYSTALLOGRAPHIC STRUCTURE REFINEMENT WITH REMARK 1 TITL 2 PHENIX.REFINE. REMARK 1 REF ACTA CRYSTALLOGR D BIOL V. 68 352 2012 REMARK 1 REF 2 CRYSTALLOGR REMARK 1 REFN ESSN 1399-0047 REMARK 1 DOI 10.1107/S0907444912001308 REMARK 2 REMARK 2 RESOLUTION. 2.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 26995 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.710 REMARK 3 FREE R VALUE TEST SET COUNT : 1272 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.2100 - 4.3000 1.00 2898 152 0.1915 0.2267 REMARK 3 2 4.3000 - 3.4100 1.00 2887 117 0.1904 0.2386 REMARK 3 3 3.4100 - 2.9800 1.00 2848 147 0.2056 0.2492 REMARK 3 4 2.9800 - 2.7100 1.00 2880 144 0.2192 0.2487 REMARK 3 5 2.7100 - 2.5100 1.00 2831 138 0.2327 0.2629 REMARK 3 6 2.5100 - 2.3700 1.00 2821 151 0.2411 0.3075 REMARK 3 7 2.3700 - 2.2500 1.00 2866 140 0.2530 0.2706 REMARK 3 8 2.2500 - 2.1500 1.00 2856 136 0.2681 0.2626 REMARK 3 9 2.1500 - 2.0700 0.99 2836 147 0.2841 0.3514 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.232 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.018 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2653 REMARK 3 ANGLE : 1.275 3617 REMARK 3 CHIRALITY : 0.065 404 REMARK 3 PLANARITY : 0.007 472 REMARK 3 DIHEDRAL : 27.160 379 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.5225 9.5393 -15.2034 REMARK 3 T TENSOR REMARK 3 T11: 0.5538 T22: 0.5826 REMARK 3 T33: 0.3675 T12: -0.0137 REMARK 3 T13: 0.1938 T23: -0.1374 REMARK 3 L TENSOR REMARK 3 L11: 1.8319 L22: 3.6023 REMARK 3 L33: 4.0358 L12: 0.9908 REMARK 3 L13: -0.9936 L23: -1.0675 REMARK 3 S TENSOR REMARK 3 S11: -0.4486 S12: -0.0403 S13: -0.4000 REMARK 3 S21: -1.0863 S22: 0.3502 S23: -0.8429 REMARK 3 S31: 0.4814 S32: 1.4457 S33: 0.0784 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 147 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.1742 16.8268 5.0270 REMARK 3 T TENSOR REMARK 3 T11: 0.1745 T22: 0.3383 REMARK 3 T33: 0.1988 T12: -0.0554 REMARK 3 T13: 0.0026 T23: -0.0254 REMARK 3 L TENSOR REMARK 3 L11: 2.3179 L22: 4.0475 REMARK 3 L33: 5.3652 L12: 0.7751 REMARK 3 L13: -0.7034 L23: 0.3898 REMARK 3 S TENSOR REMARK 3 S11: 0.0131 S12: -0.2349 S13: 0.0546 REMARK 3 S21: 0.0574 S22: 0.1600 S23: -0.2815 REMARK 3 S31: -0.2757 S32: 1.1966 S33: -0.1501 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 148 THROUGH 176 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.4101 24.7620 -7.1336 REMARK 3 T TENSOR REMARK 3 T11: 0.4916 T22: 0.2340 REMARK 3 T33: 0.3220 T12: -0.1295 REMARK 3 T13: 0.0568 T23: 0.0309 REMARK 3 L TENSOR REMARK 3 L11: 5.5162 L22: 2.1004 REMARK 3 L33: 4.0208 L12: 2.1676 REMARK 3 L13: -1.1555 L23: -1.0804 REMARK 3 S TENSOR REMARK 3 S11: -0.1821 S12: 0.5063 S13: 0.3205 REMARK 3 S21: -0.1026 S22: 0.3811 S23: 0.1650 REMARK 3 S31: -1.0009 S32: 0.3009 S33: -0.1802 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 177 THROUGH 212 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.9596 13.7336 14.5142 REMARK 3 T TENSOR REMARK 3 T11: 0.4403 T22: 0.4353 REMARK 3 T33: 0.3278 T12: -0.1391 REMARK 3 T13: 0.0041 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: -0.1108 L22: 2.2833 REMARK 3 L33: 2.1763 L12: -0.2326 REMARK 3 L13: 0.7988 L23: 1.0390 REMARK 3 S TENSOR REMARK 3 S11: 0.0264 S12: -0.0470 S13: -0.0219 REMARK 3 S21: 0.4179 S22: 0.0764 S23: 0.3541 REMARK 3 S31: 0.4228 S32: -0.3080 S33: -0.1492 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 213 THROUGH 237 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.9118 0.8116 8.2095 REMARK 3 T TENSOR REMARK 3 T11: 0.6985 T22: -0.1587 REMARK 3 T33: 0.2950 T12: 0.2688 REMARK 3 T13: 0.0479 T23: 0.1395 REMARK 3 L TENSOR REMARK 3 L11: 0.6723 L22: 3.4495 REMARK 3 L33: 6.8794 L12: -0.0369 REMARK 3 L13: -1.7504 L23: 1.8169 REMARK 3 S TENSOR REMARK 3 S11: 0.2554 S12: -0.8099 S13: -0.0888 REMARK 3 S21: 0.2342 S22: -0.1830 S23: -0.6307 REMARK 3 S31: 2.4128 S32: 1.1561 S33: 0.0974 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 238 THROUGH 270 ) REMARK 3 ORIGIN FOR THE GROUP (A): -60.7490 10.9232 -1.0478 REMARK 3 T TENSOR REMARK 3 T11: 0.4973 T22: 0.6654 REMARK 3 T33: 0.7075 T12: 0.0890 REMARK 3 T13: 0.1582 T23: -0.0455 REMARK 3 L TENSOR REMARK 3 L11: 3.0287 L22: 4.0046 REMARK 3 L33: 5.0065 L12: -0.4234 REMARK 3 L13: -0.3015 L23: 1.3241 REMARK 3 S TENSOR REMARK 3 S11: -0.1415 S12: -0.2565 S13: -0.3031 REMARK 3 S21: 0.8479 S22: -0.2390 S23: 1.6105 REMARK 3 S31: -0.2759 S32: -1.5914 S33: 0.2225 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 271 THROUGH 339 ) REMARK 3 ORIGIN FOR THE GROUP (A): -51.0689 0.5269 -9.4849 REMARK 3 T TENSOR REMARK 3 T11: 0.6644 T22: 0.2215 REMARK 3 T33: 0.3028 T12: -0.1762 REMARK 3 T13: -0.0265 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 3.1639 L22: 2.9337 REMARK 3 L33: 4.1147 L12: -0.1730 REMARK 3 L13: -0.1194 L23: 0.7383 REMARK 3 S TENSOR REMARK 3 S11: -0.3475 S12: 0.1335 S13: -0.2390 REMARK 3 S21: -0.5209 S22: 0.3587 S23: 0.3060 REMARK 3 S31: 1.0848 S32: -0.6958 S33: 0.0146 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7OSQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1292116329. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96861 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27031 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.067 REMARK 200 RESOLUTION RANGE LOW (A) : 75.908 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 20.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4JB1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% GLYCEROL AND 22% PEG 1500, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.71600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 67.43200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 50.57400 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 84.29000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 16.85800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 4 CG CD OE1 OE2 REMARK 470 GLU A 7 CG CD OE1 OE2 REMARK 470 ARG A 22 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 24 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 30 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 37 CG CD OE1 OE2 REMARK 470 ARG A 43 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 44 CG CD OE1 OE2 REMARK 470 ASP A 84 CG OD1 OD2 REMARK 470 GLU A 155 CG CD OE1 OE2 REMARK 470 GLU A 190 CG CD OE1 OE2 REMARK 470 ARG A 191 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 195 CG OD1 OD2 REMARK 470 GLN A 201 CG CD OE1 NE2 REMARK 470 ASP A 247 CG OD1 OD2 REMARK 470 GLN A 250 CG CD OE1 NE2 REMARK 470 GLU A 252 CG CD OE1 OE2 REMARK 470 ARG A 253 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 254 CG CD1 CD2 REMARK 470 ARG A 255 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 256 CG CD OE1 NE2 REMARK 470 LYS A 281 CG CD CE NZ REMARK 470 GLU A 322 CG CD OE1 OE2 REMARK 470 ARG A 326 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 565 O HOH A 577 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 25 CA - CB - CG ANGL. DEV. = 22.0 DEGREES REMARK 500 LEU A 58 CB - CG - CD2 ANGL. DEV. = -10.9 DEGREES REMARK 500 ARG A 214 CG - CD - NE ANGL. DEV. = 13.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 82 53.11 -114.52 REMARK 500 ALA A 83 -110.76 70.27 REMARK 500 GLU A 173 65.80 -118.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 191 LEU A 192 -145.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7OR2 RELATED DB: PDB REMARK 900 ANALOGUE COMPOUND REMARK 900 RELATED ID: 7ORZ RELATED DB: PDB REMARK 900 ANALOGUE COMPOUND DBREF 7OSQ A 1 339 UNP Q9HZM7 MURB_PSEAE 1 339 SEQRES 1 A 339 MET SER LEU GLU LEU GLN GLU HIS CYS SER LEU LYS PRO SEQRES 2 A 339 TYR ASN THR PHE GLY ILE ASP VAL ARG ALA ARG LEU LEU SEQRES 3 A 339 ALA HIS ALA ARG ASP GLU ALA ASP VAL ARG GLU ALA LEU SEQRES 4 A 339 ALA LEU ALA ARG GLU ARG GLY LEU PRO LEU LEU VAL ILE SEQRES 5 A 339 GLY GLY GLY SER ASN LEU LEU LEU THR ARG ASP VAL GLU SEQRES 6 A 339 ALA LEU VAL LEU ARG MET ALA SER GLN GLY ARG ARG ILE SEQRES 7 A 339 VAL SER ASP ALA ALA ASP SER VAL LEU VAL GLU ALA GLU SEQRES 8 A 339 ALA GLY GLU ALA TRP ASP PRO PHE VAL GLN TRP SER LEU SEQRES 9 A 339 GLU ARG GLY LEU ALA GLY LEU GLU ASN LEU SER LEU ILE SEQRES 10 A 339 PRO GLY THR VAL GLY ALA ALA PRO MET GLN ASN ILE GLY SEQRES 11 A 339 ALA TYR GLY VAL GLU LEU LYS ASP VAL PHE ASP SER LEU SEQRES 12 A 339 THR ALA LEU ASP ARG GLN ASP GLY THR LEU ARG GLU PHE SEQRES 13 A 339 ASP ARG GLN ALA CYS ARG PHE GLY TYR ARG ASP SER LEU SEQRES 14 A 339 PHE LYS GLN GLU PRO ASP ARG TRP LEU ILE LEU ARG VAL SEQRES 15 A 339 ARG LEU ARG LEU THR ARG ARG GLU ARG LEU HIS LEU ASP SEQRES 16 A 339 TYR GLY PRO VAL ARG GLN ARG LEU GLU GLU GLU GLY ILE SEQRES 17 A 339 ALA SER PRO THR ALA ARG ASP VAL SER ARG VAL ILE CYS SEQRES 18 A 339 ALA ILE ARG ARG GLU LYS LEU PRO ASP PRO ALA VAL LEU SEQRES 19 A 339 GLY ASN ALA GLY SER PHE PHE LYS ASN PRO LEU VAL ASP SEQRES 20 A 339 ALA THR GLN ALA GLU ARG LEU ARG GLN ALA PHE PRO ASP SEQRES 21 A 339 LEU VAL GLY TYR PRO GLN ALA ASP GLY ARG LEU LYS LEU SEQRES 22 A 339 ALA ALA GLY TRP LEU ILE ASP LYS GLY GLY TRP LYS GLY SEQRES 23 A 339 PHE ARG ASP GLY PRO VAL GLY VAL HIS ALA GLN GLN ALA SEQRES 24 A 339 LEU VAL LEU VAL ASN HIS GLY GLY ALA THR GLY ALA GLN SEQRES 25 A 339 VAL ARG ALA LEU ALA GLU ARG ILE GLN GLU ASP VAL ARG SEQRES 26 A 339 ARG ARG PHE GLY VAL GLU LEU GLU PRO GLU PRO ASN LEU SEQRES 27 A 339 TYR HET FAD A 401 53 HET 0JI A 402 15 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM 0JI 5-METHYL-1-PHENYL-1,2,3-TRIAZOLE-4-CARBOXYLIC ACID FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 0JI C10 H9 N3 O2 FORMUL 4 HOH *79(H2 O) HELIX 1 AA1 LYS A 12 ASN A 15 5 4 HELIX 2 AA2 ASP A 31 ARG A 45 1 15 HELIX 3 AA3 ALA A 95 ARG A 106 1 12 HELIX 4 AA4 LEU A 111 SER A 115 5 5 HELIX 5 AA5 ALA A 123 ASN A 128 1 6 HELIX 6 AA6 GLN A 159 ARG A 162 5 4 HELIX 7 AA7 SER A 168 GLU A 173 1 6 HELIX 8 AA8 TYR A 196 GLU A 206 1 11 HELIX 9 AA9 THR A 212 LEU A 228 1 17 HELIX 10 AB1 ASP A 247 PHE A 258 1 12 HELIX 11 AB2 ALA A 274 GLY A 282 1 9 HELIX 12 AB3 THR A 309 GLY A 329 1 21 SHEET 1 AA1 4 GLN A 6 SER A 10 0 SHEET 2 AA1 4 ARG A 22 ALA A 29 -1 O ALA A 23 N CYS A 9 SHEET 3 AA1 4 VAL A 64 MET A 71 1 O VAL A 68 N LEU A 25 SHEET 4 AA1 4 LEU A 49 ILE A 52 1 N LEU A 50 O LEU A 69 SHEET 1 AA2 2 LEU A 58 LEU A 59 0 SHEET 2 AA2 2 ASN A 337 LEU A 338 1 O ASN A 337 N LEU A 59 SHEET 1 AA3 5 ARG A 76 ALA A 82 0 SHEET 2 AA3 5 SER A 85 GLU A 91 -1 O LEU A 87 N VAL A 79 SHEET 3 AA3 5 TRP A 177 LEU A 186 -1 O LEU A 186 N VAL A 86 SHEET 4 AA3 5 PHE A 140 ASP A 147 -1 N SER A 142 O ARG A 183 SHEET 5 AA3 5 LEU A 153 ASP A 157 -1 O ARG A 154 N ALA A 145 SHEET 1 AA4 2 GLY A 130 ALA A 131 0 SHEET 2 AA4 2 VAL A 134 GLU A 135 -1 O VAL A 134 N ALA A 131 SHEET 1 AA5 3 LEU A 245 VAL A 246 0 SHEET 2 AA5 3 LEU A 271 LEU A 273 -1 O LEU A 271 N VAL A 246 SHEET 3 AA5 3 GLY A 263 PRO A 265 -1 N TYR A 264 O LYS A 272 SHEET 1 AA6 3 ARG A 288 ASP A 289 0 SHEET 2 AA6 3 VAL A 292 VAL A 294 -1 O VAL A 292 N ASP A 289 SHEET 3 AA6 3 LEU A 302 ASN A 304 -1 O VAL A 303 N GLY A 293 CRYST1 87.651 87.651 101.148 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011409 0.006587 0.000000 0.00000 SCALE2 0.000000 0.013174 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009887 0.00000