HEADER DNA BINDING PROTEIN 09-JUN-21 7OSW TITLE STRUCTURE AND FOLDING OF A 600-MILLION-YEAR-OLD NUCLEAR COACTIVATOR TITLE 2 BINDING DOMAIN SUGGEST CONSERVATION OF DYNAMIC PROPERTIES COMPND MOL_ID: 1; COMPND 2 MOLECULE: NCBD; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NUCLEAR CO-ACTIVATOR BINDING DOMAIN, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.CHI REVDAT 3 14-JUN-23 7OSW 1 REMARK REVDAT 2 27-APR-22 7OSW 1 JRNL REVDAT 1 20-APR-22 7OSW 0 JRNL AUTH E.KARLSSON,F.A.SORGENFREI,E.ANDERSSON,J.DOGAN,P.JEMTH, JRNL AUTH 2 C.N.CHI JRNL TITL THE DYNAMIC PROPERTIES OF A NUCLEAR COACTIVATOR BINDING JRNL TITL 2 DOMAIN ARE EVOLUTIONARILY CONSERVED. JRNL REF COMMUN BIOL V. 5 286 2022 JRNL REFN ESSN 2399-3642 JRNL PMID 35354917 JRNL DOI 10.1038/S42003-022-03217-Y REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7OSW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1292116393. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : 1 PA REMARK 210 SAMPLE CONTENTS : 500 UM [U-10% 13C; U-99% 15N] REMARK 210 NCBD, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-13C NOESY; 3D 1H-15N REMARK 210 NOESY; 3D HBHA(CO)NH; 3D HNCACB; REMARK 210 3D HN(COCA)CB; 3D HNHA; 2D 1H- REMARK 210 15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE NEO REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NA REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A2065 66.27 -69.72 REMARK 500 1 LYS A2075 -76.69 -117.22 REMARK 500 1 PRO A2080 62.42 -69.79 REMARK 500 1 GLN A2081 -90.95 -58.15 REMARK 500 1 GLN A2084 164.76 -47.39 REMARK 500 1 SER A2092 -63.64 -147.03 REMARK 500 1 GLN A2095 -71.91 -72.26 REMARK 500 1 ARG A2104 87.37 -68.35 REMARK 500 1 SER A2105 83.93 67.46 REMARK 500 2 PRO A2065 68.49 -69.81 REMARK 500 2 LYS A2075 -77.20 -117.89 REMARK 500 2 PRO A2080 56.36 -69.77 REMARK 500 2 GLN A2081 -84.51 -59.87 REMARK 500 2 GLN A2084 160.45 -48.65 REMARK 500 2 SER A2092 -66.23 -146.70 REMARK 500 2 GLN A2095 -75.02 -74.65 REMARK 500 2 GLN A2103 -74.57 -64.12 REMARK 500 3 PRO A2065 62.65 -69.77 REMARK 500 3 LYS A2075 -75.80 -117.85 REMARK 500 3 PRO A2080 54.19 -69.75 REMARK 500 3 GLN A2081 -81.71 -60.00 REMARK 500 3 GLN A2084 164.29 -49.13 REMARK 500 3 GLN A2085 60.87 66.85 REMARK 500 3 SER A2092 60.06 67.78 REMARK 500 3 GLN A2095 -76.91 -74.11 REMARK 500 4 PRO A2065 61.36 -69.73 REMARK 500 4 LYS A2075 -77.91 -114.93 REMARK 500 4 PRO A2080 58.93 -69.78 REMARK 500 4 GLN A2081 -84.36 -62.57 REMARK 500 4 GLN A2084 156.97 -47.12 REMARK 500 4 SER A2092 -64.17 -146.15 REMARK 500 4 GLN A2095 -75.16 -74.38 REMARK 500 5 PRO A2065 66.66 -69.81 REMARK 500 5 LYS A2075 -75.43 -116.72 REMARK 500 5 PRO A2080 58.41 -69.74 REMARK 500 5 GLN A2081 -83.36 -59.90 REMARK 500 5 GLN A2084 161.48 -46.59 REMARK 500 5 SER A2092 -50.92 -148.45 REMARK 500 5 MET A2097 35.51 -87.28 REMARK 500 6 SER A2061 -66.81 -108.81 REMARK 500 6 PRO A2065 66.08 -69.82 REMARK 500 6 LYS A2075 -78.59 -112.08 REMARK 500 6 PRO A2080 60.79 -69.72 REMARK 500 6 GLN A2081 -83.30 -62.59 REMARK 500 6 GLN A2084 159.56 -45.84 REMARK 500 6 LYS A2091 53.34 38.31 REMARK 500 6 SER A2092 -55.79 -145.75 REMARK 500 6 GLN A2095 -74.50 -74.51 REMARK 500 7 PRO A2065 63.65 -69.80 REMARK 500 7 LYS A2075 -76.64 -117.05 REMARK 500 REMARK 500 THIS ENTRY HAS 165 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34636 RELATED DB: BMRB REMARK 900 STRUCTURE AND FOLDING OF A 600-MILLION-YEAR-OLD NUCLEAR COACTIVATOR REMARK 900 BINDING DOMAIN SUGGEST CONSERVATION OF DYNAMIC PROPERTIES DBREF 7OSW A 2060 2109 PDB 7OSW 7OSW 2060 2109 SEQRES 1 A 50 GLY SER ILE MET PRO PRO ALA LEU GLN GLN LEU LEU GLN SEQRES 2 A 50 THR LEU LYS SER PRO ASN SER PRO GLN GLN GLN GLN GLN SEQRES 3 A 50 VAL LEU HIS ILE LEU LYS SER ASN PRO GLN LEU MET ALA SEQRES 4 A 50 ALA PHE ILE LYS GLN ARG SER GLN GLN GLN GLN HELIX 1 AA1 LEU A 2067 LEU A 2074 1 8 HELIX 2 AA2 GLN A 2085 LEU A 2090 1 6 HELIX 3 AA3 MET A 2097 ARG A 2104 1 8 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1