HEADER ONCOPROTEIN 10-JUN-21 7OTE TITLE SRC KINASE DOMAIN IN COMPLEX WITH PONATINIB COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTO-ONCOGENE TYROSINE-PROTEIN KINASE SRC; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTO-ONCOGENE C-SRC,PP60C-SRC,P60-SRC; COMPND 5 EC: 2.7.10.2; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: 6XH CORRESPONDS TO THE PURIFICATION TAG SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SRC, SRC1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ATP INHIBITOR, KINASE, LIGAND BINDING, CELL SIGNALLING, ONCOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.SORIANO-MALDONADO,H.N.CUESTA-HERNANDEZ,I.PLAZA-MENACHO REVDAT 4 27-MAR-24 7OTE 1 JRNL REVDAT 3 31-JAN-24 7OTE 1 REMARK REVDAT 2 02-AUG-23 7OTE 1 JRNL REVDAT 1 22-JUN-22 7OTE 0 JRNL AUTH H.N.CUESTA-HERNANDEZ,J.CONTRERAS,P.SORIANO-MALDONADO, JRNL AUTH 2 J.SANCHEZ-WANDELMER,W.YEUNG,A.MARTIN-HURTADO,I.G.MUNOZ, JRNL AUTH 3 N.KANNAN,M.LLIMARGAS,J.MUNOZ,I.PLAZA-MENACHO JRNL TITL AN ALLOSTERIC SWITCH BETWEEN THE ACTIVATION LOOP AND A JRNL TITL 2 C-TERMINAL PALINDROMIC PHOSPHO-MOTIF CONTROLS C-SRC JRNL TITL 3 FUNCTION. JRNL REF NAT COMMUN V. 14 6548 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 37848415 JRNL DOI 10.1038/S41467-023-41890-7 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.SORIANO-MALDONADO,H.N.CUESTA-HERNANDEZ,I.PLAZA-MENACHO REMARK 1 TITL SRC KINASE DOMAIN IN COMPLEX WITH PONATINIB REMARK 1 REF BIORXIV 2023 REMARK 1 REFN ISSN 2692-8205 REMARK 1 DOI 10.1101/2022.10.16.512342 REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 3 NUMBER OF REFLECTIONS : 20255 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.400 REMARK 3 FREE R VALUE TEST SET COUNT : 1164 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.49 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1378 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.3240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4160 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 146 REMARK 3 SOLVENT ATOMS : 82 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -14.52000 REMARK 3 B22 (A**2) : 48.63000 REMARK 3 B33 (A**2) : -34.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.34000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.123 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.064 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.169 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.079 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.900 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4405 ; 0.012 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 4090 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5961 ; 1.757 ; 2.007 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9492 ; 1.036 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 514 ; 7.143 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 194 ;39.773 ;23.814 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 744 ;17.593 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;15.648 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 639 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4750 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 896 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.615 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -H,-K,L REMARK 3 TWIN FRACTION : 0.385 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7OTE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1292115155. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 7-8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21420 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.490 REMARK 200 RESOLUTION RANGE LOW (A) : 63.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.2 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.18000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 8.94 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.04100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3EL8 REMARK 200 REMARK 200 REMARK: THIN NEEDLES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS 20 MM PH 8, 150 MM SODIUM REMARK 280 CHLORIDE, 1 MM DTT, 2-PROPANOL AND PEG 4.000, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 62.31550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 244 REMARK 465 HIS A 245 REMARK 465 HIS A 246 REMARK 465 HIS A 247 REMARK 465 HIS A 248 REMARK 465 HIS A 249 REMARK 465 GLY A 250 REMARK 465 SER A 251 REMARK 465 ASP A 252 REMARK 465 ILE A 253 REMARK 465 GLN A 254 REMARK 465 THR A 255 REMARK 465 GLN A 256 REMARK 465 GLY A 257 REMARK 465 LEU A 258 REMARK 465 ALA A 259 REMARK 465 LYS A 260 REMARK 465 LEU A 410 REMARK 465 ALA A 411 REMARK 465 ARG A 412 REMARK 465 LEU A 413 REMARK 465 ILE A 414 REMARK 465 GLU A 415 REMARK 465 ASP A 416 REMARK 465 ASN A 417 REMARK 465 GLU A 418 REMARK 465 TYR A 419 REMARK 465 THR A 420 REMARK 465 ALA A 421 REMARK 465 ARG A 422 REMARK 465 GLN A 423 REMARK 465 GLY A 424 REMARK 465 ALA A 425 REMARK 465 LYS A 426 REMARK 465 HIS B 244 REMARK 465 HIS B 245 REMARK 465 HIS B 246 REMARK 465 HIS B 247 REMARK 465 HIS B 248 REMARK 465 HIS B 249 REMARK 465 GLY B 250 REMARK 465 SER B 251 REMARK 465 ASP B 252 REMARK 465 ILE B 253 REMARK 465 GLN B 254 REMARK 465 THR B 255 REMARK 465 GLN B 256 REMARK 465 GLY B 257 REMARK 465 LEU B 258 REMARK 465 ALA B 259 REMARK 465 LYS B 260 REMARK 465 LEU B 410 REMARK 465 ALA B 411 REMARK 465 ARG B 412 REMARK 465 LEU B 413 REMARK 465 ILE B 414 REMARK 465 GLU B 415 REMARK 465 ASP B 416 REMARK 465 ASN B 417 REMARK 465 GLU B 418 REMARK 465 TYR B 419 REMARK 465 THR B 420 REMARK 465 ALA B 421 REMARK 465 ARG B 422 REMARK 465 GLN B 423 REMARK 465 GLY B 424 REMARK 465 ALA B 425 REMARK 465 LYS B 426 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 281 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE B 281 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 732 O HOH B 735 1.85 REMARK 500 N LEU A 366 O HOH A 701 1.94 REMARK 500 O LEU B 519 O HOH B 701 1.97 REMARK 500 O LEU A 363 O HOH A 701 2.02 REMARK 500 N TYR B 522 O HOH B 701 2.04 REMARK 500 N CYS A 499 O HOH A 702 2.05 REMARK 500 O HOH B 705 O HOH B 714 2.08 REMARK 500 C LEU B 519 O HOH B 701 2.14 REMARK 500 C ASP A 496 O HOH A 702 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR B 360 OD1 ASP B 476 1455 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 262 -61.84 63.63 REMARK 500 GLU A 273 -62.78 -92.55 REMARK 500 GLN A 278 74.25 -158.92 REMARK 500 THR A 292 -63.65 -126.84 REMARK 500 SER A 306 160.30 82.05 REMARK 500 GLU A 308 -76.53 -81.55 REMARK 500 TYR A 329 -68.74 -106.85 REMARK 500 ARG A 388 -24.96 85.49 REMARK 500 ASP A 389 54.90 -140.40 REMARK 500 PHE A 408 59.41 -117.56 REMARK 500 PRO A 428 92.79 -61.46 REMARK 500 LYS A 461 19.27 82.69 REMARK 500 PRO A 465 151.08 -47.57 REMARK 500 TYR A 466 70.27 53.17 REMARK 500 VAL A 474 -70.22 -64.21 REMARK 500 PRO A 506 -37.76 -38.68 REMARK 500 PRO A 510 -176.28 -62.67 REMARK 500 THR A 526 -30.20 -133.88 REMARK 500 LEU B 276 -75.02 -126.34 REMARK 500 GLN B 278 60.82 -157.75 REMARK 500 PHE B 281 10.56 -145.26 REMARK 500 THR B 292 -59.30 -146.20 REMARK 500 GLU B 335 146.07 64.32 REMARK 500 ARG B 388 -42.77 98.12 REMARK 500 PRO B 428 62.88 -102.78 REMARK 500 ARG B 480 31.71 -95.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 743 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A 744 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A 745 DISTANCE = 8.04 ANGSTROMS REMARK 525 HOH B 737 DISTANCE = 8.43 ANGSTROMS DBREF 7OTE A 254 536 UNP P12931 SRC_HUMAN 254 536 DBREF 7OTE B 254 536 UNP P12931 SRC_HUMAN 254 536 SEQADV 7OTE HIS A 244 UNP P12931 EXPRESSION TAG SEQADV 7OTE HIS A 245 UNP P12931 EXPRESSION TAG SEQADV 7OTE HIS A 246 UNP P12931 EXPRESSION TAG SEQADV 7OTE HIS A 247 UNP P12931 EXPRESSION TAG SEQADV 7OTE HIS A 248 UNP P12931 EXPRESSION TAG SEQADV 7OTE HIS A 249 UNP P12931 EXPRESSION TAG SEQADV 7OTE GLY A 250 UNP P12931 EXPRESSION TAG SEQADV 7OTE SER A 251 UNP P12931 EXPRESSION TAG SEQADV 7OTE ASP A 252 UNP P12931 EXPRESSION TAG SEQADV 7OTE ILE A 253 UNP P12931 EXPRESSION TAG SEQADV 7OTE HIS B 244 UNP P12931 EXPRESSION TAG SEQADV 7OTE HIS B 245 UNP P12931 EXPRESSION TAG SEQADV 7OTE HIS B 246 UNP P12931 EXPRESSION TAG SEQADV 7OTE HIS B 247 UNP P12931 EXPRESSION TAG SEQADV 7OTE HIS B 248 UNP P12931 EXPRESSION TAG SEQADV 7OTE HIS B 249 UNP P12931 EXPRESSION TAG SEQADV 7OTE GLY B 250 UNP P12931 EXPRESSION TAG SEQADV 7OTE SER B 251 UNP P12931 EXPRESSION TAG SEQADV 7OTE ASP B 252 UNP P12931 EXPRESSION TAG SEQADV 7OTE ILE B 253 UNP P12931 EXPRESSION TAG SEQRES 1 A 293 HIS HIS HIS HIS HIS HIS GLY SER ASP ILE GLN THR GLN SEQRES 2 A 293 GLY LEU ALA LYS ASP ALA TRP GLU ILE PRO ARG GLU SER SEQRES 3 A 293 LEU ARG LEU GLU VAL LYS LEU GLY GLN GLY CYS PHE GLY SEQRES 4 A 293 GLU VAL TRP MET GLY THR TRP ASN GLY THR THR ARG VAL SEQRES 5 A 293 ALA ILE LYS THR LEU LYS PRO GLY THR MET SER PRO GLU SEQRES 6 A 293 ALA PHE LEU GLN GLU ALA GLN VAL MET LYS LYS LEU ARG SEQRES 7 A 293 HIS GLU LYS LEU VAL GLN LEU TYR ALA VAL VAL SER GLU SEQRES 8 A 293 GLU PRO ILE TYR ILE VAL THR GLU TYR MET SER LYS GLY SEQRES 9 A 293 SER LEU LEU ASP PHE LEU LYS GLY GLU THR GLY LYS TYR SEQRES 10 A 293 LEU ARG LEU PRO GLN LEU VAL ASP MET ALA ALA GLN ILE SEQRES 11 A 293 ALA SER GLY MET ALA TYR VAL GLU ARG MET ASN TYR VAL SEQRES 12 A 293 HIS ARG ASP LEU ARG ALA ALA ASN ILE LEU VAL GLY GLU SEQRES 13 A 293 ASN LEU VAL CYS LYS VAL ALA ASP PHE GLY LEU ALA ARG SEQRES 14 A 293 LEU ILE GLU ASP ASN GLU TYR THR ALA ARG GLN GLY ALA SEQRES 15 A 293 LYS PHE PRO ILE LYS TRP THR ALA PRO GLU ALA ALA LEU SEQRES 16 A 293 TYR GLY ARG PHE THR ILE LYS SER ASP VAL TRP SER PHE SEQRES 17 A 293 GLY ILE LEU LEU THR GLU LEU THR THR LYS GLY ARG VAL SEQRES 18 A 293 PRO TYR PRO GLY MET VAL ASN ARG GLU VAL LEU ASP GLN SEQRES 19 A 293 VAL GLU ARG GLY TYR ARG MET PRO CYS PRO PRO GLU CYS SEQRES 20 A 293 PRO GLU SER LEU HIS ASP LEU MET CYS GLN CYS TRP ARG SEQRES 21 A 293 LYS GLU PRO GLU GLU ARG PRO THR PHE GLU TYR LEU GLN SEQRES 22 A 293 ALA PHE LEU GLU ASP TYR PHE THR SER THR GLU PRO GLN SEQRES 23 A 293 TYR GLN PRO GLY GLU ASN LEU SEQRES 1 B 293 HIS HIS HIS HIS HIS HIS GLY SER ASP ILE GLN THR GLN SEQRES 2 B 293 GLY LEU ALA LYS ASP ALA TRP GLU ILE PRO ARG GLU SER SEQRES 3 B 293 LEU ARG LEU GLU VAL LYS LEU GLY GLN GLY CYS PHE GLY SEQRES 4 B 293 GLU VAL TRP MET GLY THR TRP ASN GLY THR THR ARG VAL SEQRES 5 B 293 ALA ILE LYS THR LEU LYS PRO GLY THR MET SER PRO GLU SEQRES 6 B 293 ALA PHE LEU GLN GLU ALA GLN VAL MET LYS LYS LEU ARG SEQRES 7 B 293 HIS GLU LYS LEU VAL GLN LEU TYR ALA VAL VAL SER GLU SEQRES 8 B 293 GLU PRO ILE TYR ILE VAL THR GLU TYR MET SER LYS GLY SEQRES 9 B 293 SER LEU LEU ASP PHE LEU LYS GLY GLU THR GLY LYS TYR SEQRES 10 B 293 LEU ARG LEU PRO GLN LEU VAL ASP MET ALA ALA GLN ILE SEQRES 11 B 293 ALA SER GLY MET ALA TYR VAL GLU ARG MET ASN TYR VAL SEQRES 12 B 293 HIS ARG ASP LEU ARG ALA ALA ASN ILE LEU VAL GLY GLU SEQRES 13 B 293 ASN LEU VAL CYS LYS VAL ALA ASP PHE GLY LEU ALA ARG SEQRES 14 B 293 LEU ILE GLU ASP ASN GLU TYR THR ALA ARG GLN GLY ALA SEQRES 15 B 293 LYS PHE PRO ILE LYS TRP THR ALA PRO GLU ALA ALA LEU SEQRES 16 B 293 TYR GLY ARG PHE THR ILE LYS SER ASP VAL TRP SER PHE SEQRES 17 B 293 GLY ILE LEU LEU THR GLU LEU THR THR LYS GLY ARG VAL SEQRES 18 B 293 PRO TYR PRO GLY MET VAL ASN ARG GLU VAL LEU ASP GLN SEQRES 19 B 293 VAL GLU ARG GLY TYR ARG MET PRO CYS PRO PRO GLU CYS SEQRES 20 B 293 PRO GLU SER LEU HIS ASP LEU MET CYS GLN CYS TRP ARG SEQRES 21 B 293 LYS GLU PRO GLU GLU ARG PRO THR PHE GLU TYR LEU GLN SEQRES 22 B 293 ALA PHE LEU GLU ASP TYR PHE THR SER THR GLU PRO GLN SEQRES 23 B 293 TYR GLN PRO GLY GLU ASN LEU HET 0LI A 601 39 HET TRS A 602 8 HET GOL A 603 6 HET GOL A 604 6 HET GOL A 605 6 HET GOL A 606 6 HET 0LI B 601 39 HET GOL B 602 6 HET GOL B 603 6 HET GOL B 604 6 HET GOL B 605 6 HET GOL B 606 6 HET GOL B 607 6 HETNAM 0LI 3-(IMIDAZO[1,2-B]PYRIDAZIN-3-YLETHYNYL)-4-METHYL-N-{4- HETNAM 2 0LI [(4-METHYLPIPERAZIN-1-YL)METHYL]-3-(TRIFLUOROMETHYL) HETNAM 3 0LI PHENYL}BENZAM IDE HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM GOL GLYCEROL HETSYN 0LI PONATINIB HETSYN TRS TRIS BUFFER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 0LI 2(C29 H27 F3 N6 O) FORMUL 4 TRS C4 H12 N O3 1+ FORMUL 5 GOL 10(C3 H8 O3) FORMUL 16 HOH *82(H2 O) HELIX 1 AA1 MET A 305 PHE A 310 1 6 HELIX 2 AA2 LEU A 311 LEU A 320 1 10 HELIX 3 AA3 LEU A 349 GLY A 355 1 7 HELIX 4 AA4 GLU A 356 TYR A 360 5 5 HELIX 5 AA5 ARG A 362 MET A 383 1 22 HELIX 6 AA6 ARG A 391 ALA A 393 5 3 HELIX 7 AA7 GLU A 399 LEU A 401 5 3 HELIX 8 AA8 PRO A 428 THR A 432 5 5 HELIX 9 AA9 ALA A 433 GLY A 440 1 8 HELIX 10 AB1 THR A 443 LYS A 461 1 19 HELIX 11 AB2 VAL A 470 ARG A 480 1 11 HELIX 12 AB3 PRO A 491 TRP A 502 1 12 HELIX 13 AB4 GLU A 505 ARG A 509 5 5 HELIX 14 AB5 THR A 511 ASP A 521 1 11 HELIX 15 AB6 ASP A 521 THR A 526 1 6 HELIX 16 AB7 PRO B 266 LEU B 270 5 5 HELIX 17 AB8 SER B 306 LEU B 320 1 15 HELIX 18 AB9 LEU B 349 GLY B 355 1 7 HELIX 19 AC1 GLU B 356 LEU B 361 5 6 HELIX 20 AC2 ARG B 362 MET B 383 1 22 HELIX 21 AC3 ARG B 391 ALA B 393 5 3 HELIX 22 AC4 GLU B 399 LEU B 401 5 3 HELIX 23 AC5 PRO B 428 THR B 432 5 5 HELIX 24 AC6 ALA B 433 GLY B 440 1 8 HELIX 25 AC7 THR B 443 THR B 460 1 18 HELIX 26 AC8 VAL B 470 ARG B 480 1 11 HELIX 27 AC9 PRO B 491 TRP B 502 1 12 HELIX 28 AD1 GLU B 505 ARG B 509 5 5 HELIX 29 AD2 THR B 511 THR B 526 1 16 SHEET 1 AA1 4 LEU A 270 GLN A 278 0 SHEET 2 AA1 4 GLY A 282 TRP A 289 -1 O VAL A 284 N LEU A 276 SHEET 3 AA1 4 VAL A 295 LEU A 300 -1 O THR A 299 N GLU A 283 SHEET 4 AA1 4 TYR A 338 GLU A 342 -1 O THR A 341 N ALA A 296 SHEET 1 AA2 3 GLY A 347 SER A 348 0 SHEET 2 AA2 3 ILE A 395 VAL A 397 -1 O VAL A 397 N GLY A 347 SHEET 3 AA2 3 CYS A 403 VAL A 405 -1 O LYS A 404 N LEU A 396 SHEET 1 AA3 5 VAL B 274 LYS B 275 0 SHEET 2 AA3 5 GLY B 282 TRP B 289 -1 O MET B 286 N VAL B 274 SHEET 3 AA3 5 THR B 293 LEU B 300 -1 O ILE B 297 N TRP B 285 SHEET 4 AA3 5 TYR B 338 THR B 341 -1 O THR B 341 N ALA B 296 SHEET 5 AA3 5 LEU B 328 VAL B 332 -1 N TYR B 329 O VAL B 340 SHEET 1 AA4 3 GLY B 347 SER B 348 0 SHEET 2 AA4 3 ILE B 395 VAL B 397 -1 O VAL B 397 N GLY B 347 SHEET 3 AA4 3 CYS B 403 VAL B 405 -1 O LYS B 404 N LEU B 396 CISPEP 1 GLU A 335 PRO A 336 0 -0.84 CISPEP 2 GLU B 335 PRO B 336 0 -14.14 CRYST1 42.153 124.631 63.591 90.00 90.15 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023723 0.000000 0.000062 0.00000 SCALE2 0.000000 0.008024 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015726 0.00000