HEADER TRANSFERASE 10-JUN-21 7OTT TITLE METABOLON-EMBEDDED PYRUVATE DEHYDROGENASE COMPLEX E2 CORE AT NEAR- TITLE 2 ATOMIC RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPND 3 COMPLEX; COMPND 4 CHAIN: A; COMPND 5 EC: 2.3.1.12 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHAETOMIUM THERMOPHILUM (STRAIN DSM 1495 / CBS SOURCE 3 144.50 / IMI 039719); SOURCE 4 ORGANISM_TAXID: 759272; SOURCE 5 STRAIN: DSM 1495 / CBS 144.50 / IMI 039719 KEYWDS PYRUVATE, DEHYDROGENASE, COMPLEX, E2, CORE, C.THERMOPHILUM, KEYWDS 2 METABOLON, TRANSFERASE EXPDTA ELECTRON MICROSCOPY AUTHOR C.TUETING,P.L.KASTRITIS REVDAT 2 08-DEC-21 7OTT 1 JRNL REVDAT 1 01-DEC-21 7OTT 0 JRNL AUTH C.TUTING,F.L.KYRILIS,J.MULLER,M.SOROKINA,I.SKALIDIS,F.HAMDI, JRNL AUTH 2 Y.SADIAN,P.L.KASTRITIS JRNL TITL CRYO-EM SNAPSHOTS OF A NATIVE LYSATE PROVIDE STRUCTURAL JRNL TITL 2 INSIGHTS INTO A METABOLON-EMBEDDED TRANSACETYLASE REACTION. JRNL REF NAT COMMUN V. 12 6933 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 34836937 JRNL DOI 10.1038/S41467-021-27287-4 REMARK 2 REMARK 2 RESOLUTION. 3.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : RELION, EPU, GCTF, UCSF CHIMERAX, REMARK 3 PHENIX, COOT, RELION, RELION, RELION, REMARK 3 RELION REMARK 3 RECONSTRUCTION SCHEMA : SIMULTANEOUS ITERATIVE (SIRT) REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 7BGJ REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : THE INITIAL MODEL WAS FITTED USING CHIMERAX REMARK 3 AND THEN SUBSEQUENTLY REFINED USING ITERATIVE CYCLES OF MANUAL REMARK 3 REFINEMENT USING COOT AND AUTOMATIC REAL-SPACE REFINEMENT USING REMARK 3 PHENIX. REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.840 REMARK 3 NUMBER OF PARTICLES : 10249 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7OTT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1292116111. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : METABOLON-EMBEDDED PYRUVATE REMARK 245 DEHYDROGENASE COMPLEX E2 CORE REMARK 245 AT NEAR-ATOMIC RESOLUTION REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.30 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : ICOSAHEDRALLY SYMMETRIZED E2 REMARK 245 CORE COMPONENT OF THE PYRUVATE DEHYDROGENASE COMPLEX METABOLON REMARK 245 FROM THE THERMOPHILIC FUNGUS CHAETOMIUM THERMOPHILUM REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 2808 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS GLACIOS REMARK 245 DETECTOR TYPE : FEI FALCON III (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 3000.00 REMARK 245 ILLUMINATION MODE : OTHER REMARK 245 NOMINAL MAGNIFICATION : 92000 REMARK 245 CALIBRATED MAGNIFICATION : 95677 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 60-MERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.309083 -0.500256 -0.808833 788.08356 REMARK 350 BIOMT2 2 0.499300 -0.809195 0.309680 301.15259 REMARK 350 BIOMT3 2 -0.809424 -0.308134 0.499887 487.02165 REMARK 350 BIOMT1 3 0.000020 -0.000032 -1.000000 602.03645 REMARK 350 BIOMT2 3 -1.000000 -0.000021 -0.000020 602.04543 REMARK 350 BIOMT3 3 -0.000021 1.000000 -0.000032 0.01598 REMARK 350 BIOMT1 4 -0.499789 -0.809223 -0.308819 787.99137 REMARK 350 BIOMT2 4 -0.809286 0.309233 0.499432 301.21736 REMARK 350 BIOMT3 4 -0.308655 0.499533 -0.809444 487.11398 REMARK 350 BIOMT1 5 -0.309033 -0.499101 0.809566 300.67924 REMARK 350 BIOMT2 5 -0.500885 0.809023 0.307565 115.68297 REMARK 350 BIOMT3 5 -0.808463 -0.310452 -0.500007 788.21489 REMARK 350 BIOMT1 6 0.308550 0.500519 0.808874 -185.94143 REMARK 350 BIOMT2 6 -0.499211 0.809051 -0.310201 301.03237 REMARK 350 BIOMT3 6 -0.809682 -0.308086 0.499497 487.19884 REMARK 350 BIOMT1 7 -0.809649 -0.307989 0.499612 487.13347 REMARK 350 BIOMT2 7 0.308662 0.500583 0.808792 -185.97407 REMARK 350 BIOMT3 7 -0.499196 0.809049 -0.310231 301.03618 REMARK 350 BIOMT1 8 -0.308100 0.501253 0.808592 -0.49065 REMARK 350 BIOMT2 8 0.500308 0.808286 -0.310429 0.41273 REMARK 350 BIOMT3 8 -0.809177 0.308902 -0.499813 602.04415 REMARK 350 BIOMT1 9 -0.000051 1.000000 -0.000512 0.15264 REMARK 350 BIOMT2 9 0.000363 -0.000512 -1.000000 602.02638 REMARK 350 BIOMT3 9 -1.000000 -0.000051 -0.000363 602.14282 REMARK 350 BIOMT1 10 -0.308972 0.499619 -0.809270 487.15212 REMARK 350 BIOMT2 10 -0.499682 -0.809277 -0.308849 787.98304 REMARK 350 BIOMT3 10 -0.809230 0.308952 0.499695 301.19056 REMARK 350 BIOMT1 11 -0.808547 -0.310366 -0.499925 788.20388 REMARK 350 BIOMT2 11 -0.308844 -0.499326 0.809499 300.69777 REMARK 350 BIOMT3 11 -0.500867 0.808917 0.307874 115.62650 REMARK 350 BIOMT1 12 0.309436 0.499029 -0.809456 301.20391 REMARK 350 BIOMT2 12 -0.500759 0.809157 0.307416 115.64619 REMARK 350 BIOMT3 12 0.808387 0.310217 0.500275 -186.16919 REMARK 350 BIOMT1 13 0.308752 -0.499664 0.809325 114.95421 REMARK 350 BIOMT2 13 -0.499953 -0.809125 -0.308811 788.02121 REMARK 350 BIOMT3 13 0.809147 -0.309279 -0.499628 300.93156 REMARK 350 BIOMT1 14 -0.500750 -0.808264 0.309772 601.93283 REMARK 350 BIOMT2 14 0.808812 -0.309434 0.500073 0.15982 REMARK 350 BIOMT3 14 -0.308337 0.500959 0.808683 -0.36851 REMARK 350 BIOMT1 15 0.808646 0.310297 0.499807 -186.14666 REMARK 350 BIOMT2 15 -0.308724 -0.499373 0.809516 300.66078 REMARK 350 BIOMT3 15 0.500781 -0.808914 -0.308020 486.49091 REMARK 350 BIOMT1 16 0.809460 0.308112 -0.499841 114.99255 REMARK 350 BIOMT2 16 0.309012 0.500311 0.808826 -186.03231 REMARK 350 BIOMT3 16 0.499286 -0.809169 0.309772 301.13067 REMARK 350 BIOMT1 17 0.308044 -0.500491 -0.809084 602.50864 REMARK 350 BIOMT2 17 0.500846 0.808363 -0.309357 -0.06046 REMARK 350 BIOMT3 17 0.808865 -0.309931 0.499680 0.35608 REMARK 350 BIOMT1 18 0.000245 -1.000000 0.000031 601.95729 REMARK 350 BIOMT2 18 -0.000083 -0.000031 -1.000000 602.04868 REMARK 350 BIOMT3 18 1.000000 0.000245 -0.000083 -0.02757 REMARK 350 BIOMT1 19 0.000012 -0.000036 -1.000000 602.03871 REMARK 350 BIOMT2 19 1.000000 0.000023 0.000012 -0.00830 REMARK 350 BIOMT3 19 0.000023 -1.000000 0.000036 602.01811 REMARK 350 BIOMT1 20 -0.499572 -0.809378 -0.308763 787.94079 REMARK 350 BIOMT2 20 0.809508 -0.309275 -0.499045 300.63803 REMARK 350 BIOMT3 20 0.308424 -0.499255 0.809703 114.84735 REMARK 350 BIOMT1 21 -0.308843 -0.499319 0.809504 300.69220 REMARK 350 BIOMT2 21 0.500811 -0.808941 -0.307902 486.45484 REMARK 350 BIOMT3 21 0.808582 0.310315 0.499900 -186.15326 REMARK 350 BIOMT1 22 0.308932 0.500327 0.808847 -186.01428 REMARK 350 BIOMT2 22 0.499211 -0.809180 0.309864 301.13272 REMARK 350 BIOMT3 22 0.809536 0.308059 -0.499751 114.95637 REMARK 350 BIOMT1 23 0.499547 0.809383 0.308790 -185.90365 REMARK 350 BIOMT2 23 0.809550 -0.309286 -0.498970 300.61090 REMARK 350 BIOMT3 23 -0.308353 0.499240 -0.809739 487.17789 REMARK 350 BIOMT1 24 0.500515 0.808384 -0.309838 0.15939 REMARK 350 BIOMT2 24 0.809105 -0.309487 0.499567 0.21801 REMARK 350 BIOMT3 24 0.307951 -0.500732 -0.808970 602.55524 REMARK 350 BIOMT1 25 0.307983 -0.500744 -0.808951 602.54168 REMARK 350 BIOMT2 25 -0.500546 -0.808373 0.309818 601.88849 REMARK 350 BIOMT3 25 -0.809074 0.309498 -0.499610 601.81514 REMARK 350 BIOMT1 26 -0.000456 0.000523 1.000000 0.04358 REMARK 350 BIOMT2 26 1.000000 0.000273 0.000456 -0.18826 REMARK 350 BIOMT3 26 -0.000273 1.000000 -0.000523 0.23436 REMARK 350 BIOMT1 27 0.000111 -1.000000 0.000593 601.84194 REMARK 350 BIOMT2 27 -0.000469 0.000593 1.000000 0.02981 REMARK 350 BIOMT3 27 -1.000000 -0.000111 -0.000469 602.18168 REMARK 350 BIOMT1 28 0.308654 -0.499523 0.809450 114.90426 REMARK 350 BIOMT2 28 0.499708 0.809258 0.308858 -185.94589 REMARK 350 BIOMT3 28 -0.809336 0.309159 0.499396 301.27699 REMARK 350 BIOMT1 29 0.808559 0.310095 0.500074 -186.15598 REMARK 350 BIOMT2 29 0.308906 0.499635 -0.809285 301.20998 REMARK 350 BIOMT3 29 -0.500809 0.808830 0.308194 115.53916 REMARK 350 BIOMT1 30 0.809343 0.307828 -0.500206 115.19785 REMARK 350 BIOMT2 30 -0.309294 -0.500622 -0.808527 788.16399 REMARK 350 BIOMT3 30 -0.499302 0.809086 -0.309965 300.98370 REMARK 350 BIOMT1 31 0.499286 -0.809179 0.309746 301.13668 REMARK 350 BIOMT2 31 0.809452 0.308116 -0.499852 114.99842 REMARK 350 BIOMT3 31 0.309032 0.500294 0.808830 -186.03789 REMARK 350 BIOMT1 32 0.808734 -0.309709 0.500030 0.26377 REMARK 350 BIOMT2 32 0.308250 -0.500860 -0.808778 602.43884 REMARK 350 BIOMT3 32 0.500931 0.808220 -0.309595 0.00222 REMARK 350 BIOMT1 33 1.000000 0.000200 -0.000021 -0.03203 REMARK 350 BIOMT2 33 0.000200 -1.000000 0.000088 601.95891 REMARK 350 BIOMT3 33 -0.000021 -0.000088 -1.000000 602.03942 REMARK 350 BIOMT1 34 -0.500782 0.808884 0.308099 115.54124 REMARK 350 BIOMT2 34 0.808581 0.310144 0.500008 -186.15523 REMARK 350 BIOMT3 34 0.308893 0.499518 -0.809362 301.26044 REMARK 350 BIOMT1 35 0.809252 -0.309280 -0.499457 300.83865 REMARK 350 BIOMT2 35 0.308649 -0.499554 0.809433 114.92794 REMARK 350 BIOMT3 35 -0.499847 -0.809192 -0.308806 787.99656 REMARK 350 BIOMT1 36 0.500872 -0.808870 -0.307988 486.42648 REMARK 350 BIOMT2 36 0.808542 0.310296 0.499977 -186.16751 REMARK 350 BIOMT3 36 -0.308849 -0.499445 0.809424 300.73321 REMARK 350 BIOMT1 37 -0.809242 0.308930 0.499690 301.20014 REMARK 350 BIOMT2 37 -0.308980 0.499612 -0.809271 487.15708 REMARK 350 BIOMT3 37 -0.499659 -0.809290 -0.308854 787.97993 REMARK 350 BIOMT1 38 -1.000000 -0.000255 -0.000337 602.17391 REMARK 350 BIOMT2 38 0.000255 -1.000000 0.000663 601.79105 REMARK 350 BIOMT3 38 -0.000337 0.000663 1.000000 -0.00786 REMARK 350 BIOMT1 39 -0.500809 0.808942 0.307902 115.57938 REMARK 350 BIOMT2 39 -0.808582 -0.310312 -0.499902 788.18849 REMARK 350 BIOMT3 39 -0.308846 -0.499320 0.809502 300.69345 REMARK 350 BIOMT1 40 -0.499239 0.809025 -0.310223 301.05407 REMARK 350 BIOMT2 40 -0.809657 -0.308077 0.499545 487.17458 REMARK 350 BIOMT3 40 0.308572 0.500566 0.808837 -185.94912 REMARK 350 BIOMT1 41 -0.808885 0.309918 -0.499655 601.68357 REMARK 350 BIOMT2 41 -0.308062 0.500430 0.809116 -0.46091 REMARK 350 BIOMT3 41 0.500802 0.808406 -0.309316 -0.06548 REMARK 350 BIOMT1 42 -1.000000 -0.000210 -0.000322 602.16024 REMARK 350 BIOMT2 42 -0.000209 1.000000 -0.000558 0.20541 REMARK 350 BIOMT3 42 0.000322 -0.000558 -1.000000 602.02940 REMARK 350 BIOMT1 43 -0.000080 1.000000 -0.000570 0.17800 REMARK 350 BIOMT2 43 -0.000427 0.000570 1.000000 0.01944 REMARK 350 BIOMT3 43 1.000000 0.000080 0.000427 -0.13211 REMARK 350 BIOMT1 44 -0.308625 0.499672 -0.809369 487.08309 REMARK 350 BIOMT2 44 0.499593 0.809241 0.309090 -185.96820 REMARK 350 BIOMT3 44 0.809418 -0.308963 -0.499384 300.69128 REMARK 350 BIOMT1 45 0.308720 0.499366 -0.809522 301.37377 REMARK 350 BIOMT2 45 0.500782 -0.808916 -0.308014 486.49211 REMARK 350 BIOMT3 45 -0.808646 -0.310304 -0.499802 788.17934 REMARK 350 BIOMT1 46 -0.808556 -0.310303 -0.499948 788.20131 REMARK 350 BIOMT2 46 0.308767 0.499527 -0.809405 301.30215 REMARK 350 BIOMT3 46 0.500899 -0.808817 -0.308084 486.42898 REMARK 350 BIOMT1 47 -0.809120 -0.308204 0.500335 486.81950 REMARK 350 BIOMT2 47 -0.309532 -0.500212 -0.808689 788.18602 REMARK 350 BIOMT3 47 0.499515 -0.809196 0.309332 301.17994 REMARK 350 BIOMT1 48 -0.308384 0.501174 0.808532 -0.37016 REMARK 350 BIOMT2 48 -0.501035 -0.808079 0.309792 601.97374 REMARK 350 BIOMT3 48 0.808618 -0.309568 0.500305 0.19313 REMARK 350 BIOMT1 49 0.809100 -0.309454 0.499595 0.20307 REMARK 350 BIOMT2 49 -0.307955 0.500792 0.808932 -0.52321 REMARK 350 BIOMT3 49 -0.500521 -0.808360 0.309892 601.85560 REMARK 350 BIOMT1 50 -0.809184 0.309074 0.499695 301.14757 REMARK 350 BIOMT2 50 0.308906 -0.499651 0.809275 114.91304 REMARK 350 BIOMT3 50 0.499799 0.809211 0.308835 -185.96532 REMARK 350 BIOMT1 51 0.809358 -0.309428 -0.499193 300.76682 REMARK 350 BIOMT2 51 -0.308342 0.499534 -0.809563 487.06309 REMARK 350 BIOMT3 51 0.499865 0.809148 0.308892 -185.99327 REMARK 350 BIOMT1 52 0.500765 -0.808906 -0.308066 486.50648 REMARK 350 BIOMT2 52 -0.808662 -0.310268 -0.499800 788.17883 REMARK 350 BIOMT3 52 0.308708 0.499404 -0.809503 301.36958 REMARK 350 BIOMT1 53 0.499194 -0.809048 0.310236 300.99809 REMARK 350 BIOMT2 53 -0.809651 -0.307987 0.499608 487.13446 REMARK 350 BIOMT3 53 -0.308659 -0.500584 -0.808792 788.00900 REMARK 350 BIOMT1 54 -0.308979 -0.500327 -0.808829 788.05846 REMARK 350 BIOMT2 54 -0.499274 0.809163 -0.309806 300.90858 REMARK 350 BIOMT3 54 0.809479 0.308104 -0.499815 114.97988 REMARK 350 BIOMT1 55 -0.500452 -0.808432 0.309816 601.86700 REMARK 350 BIOMT2 55 -0.809165 0.309496 -0.499464 601.81254 REMARK 350 BIOMT3 55 0.307896 -0.500650 -0.809042 602.57622 REMARK 350 BIOMT1 56 -0.499303 0.809182 -0.309713 300.89392 REMARK 350 BIOMT2 56 0.809432 0.308132 -0.499874 115.00700 REMARK 350 BIOMT3 56 -0.309057 -0.500280 -0.808829 788.07774 REMARK 350 BIOMT1 57 -0.000070 0.000106 1.000000 0.00693 REMARK 350 BIOMT2 57 -1.000000 -0.000265 -0.000070 602.12260 REMARK 350 BIOMT3 57 0.000265 -1.000000 0.000106 601.91352 REMARK 350 BIOMT1 58 -0.808798 0.309437 -0.500094 601.87520 REMARK 350 BIOMT2 58 0.308321 -0.501018 -0.808653 602.41605 REMARK 350 BIOMT3 58 -0.500784 -0.808226 0.309816 601.92439 REMARK 350 BIOMT1 59 0.500249 0.808314 -0.310450 0.43230 REMARK 350 BIOMT2 59 -0.809269 0.308943 -0.499638 602.02197 REMARK 350 BIOMT3 59 -0.307954 0.501181 0.808692 -0.55191 REMARK 350 BIOMT1 60 0.499560 0.809380 0.308777 -185.90476 REMARK 350 BIOMT2 60 -0.809517 0.309262 0.499039 301.40437 REMARK 350 BIOMT3 60 0.308419 -0.499260 0.809702 114.84974 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 ALA A 3 REMARK 465 GLN A 4 REMARK 465 VAL A 5 REMARK 465 LEU A 6 REMARK 465 ARG A 7 REMARK 465 ARG A 8 REMARK 465 GLN A 9 REMARK 465 ALA A 10 REMARK 465 LEU A 11 REMARK 465 GLN A 12 REMARK 465 HIS A 13 REMARK 465 VAL A 14 REMARK 465 ARG A 15 REMARK 465 LEU A 16 REMARK 465 ALA A 17 REMARK 465 ARG A 18 REMARK 465 ALA A 19 REMARK 465 ALA A 20 REMARK 465 ALA A 21 REMARK 465 PRO A 22 REMARK 465 SER A 23 REMARK 465 LEU A 24 REMARK 465 THR A 25 REMARK 465 ARG A 26 REMARK 465 TRP A 27 REMARK 465 TYR A 28 REMARK 465 ALA A 29 REMARK 465 SER A 30 REMARK 465 TYR A 31 REMARK 465 PRO A 32 REMARK 465 PRO A 33 REMARK 465 HIS A 34 REMARK 465 THR A 35 REMARK 465 ILE A 36 REMARK 465 VAL A 37 REMARK 465 LYS A 38 REMARK 465 MET A 39 REMARK 465 PRO A 40 REMARK 465 ALA A 41 REMARK 465 LEU A 42 REMARK 465 SER A 43 REMARK 465 PRO A 44 REMARK 465 THR A 45 REMARK 465 MET A 46 REMARK 465 THR A 47 REMARK 465 SER A 48 REMARK 465 GLY A 49 REMARK 465 ASN A 50 REMARK 465 ILE A 51 REMARK 465 GLY A 52 REMARK 465 ALA A 53 REMARK 465 TRP A 54 REMARK 465 GLN A 55 REMARK 465 LYS A 56 REMARK 465 LYS A 57 REMARK 465 PRO A 58 REMARK 465 GLY A 59 REMARK 465 ASP A 60 REMARK 465 ALA A 61 REMARK 465 ILE A 62 REMARK 465 THR A 63 REMARK 465 PRO A 64 REMARK 465 GLY A 65 REMARK 465 GLU A 66 REMARK 465 VAL A 67 REMARK 465 LEU A 68 REMARK 465 VAL A 69 REMARK 465 GLU A 70 REMARK 465 ILE A 71 REMARK 465 GLU A 72 REMARK 465 THR A 73 REMARK 465 ASP A 74 REMARK 465 LYS A 75 REMARK 465 ALA A 76 REMARK 465 GLN A 77 REMARK 465 MET A 78 REMARK 465 ASP A 79 REMARK 465 PHE A 80 REMARK 465 GLU A 81 REMARK 465 PHE A 82 REMARK 465 GLN A 83 REMARK 465 GLU A 84 REMARK 465 GLU A 85 REMARK 465 GLY A 86 REMARK 465 VAL A 87 REMARK 465 LEU A 88 REMARK 465 ALA A 89 REMARK 465 LYS A 90 REMARK 465 ILE A 91 REMARK 465 LEU A 92 REMARK 465 LYS A 93 REMARK 465 GLU A 94 REMARK 465 THR A 95 REMARK 465 GLY A 96 REMARK 465 GLU A 97 REMARK 465 LYS A 98 REMARK 465 ASP A 99 REMARK 465 VAL A 100 REMARK 465 ALA A 101 REMARK 465 VAL A 102 REMARK 465 GLY A 103 REMARK 465 SER A 104 REMARK 465 PRO A 105 REMARK 465 ILE A 106 REMARK 465 ALA A 107 REMARK 465 VAL A 108 REMARK 465 LEU A 109 REMARK 465 VAL A 110 REMARK 465 GLU A 111 REMARK 465 GLU A 112 REMARK 465 GLY A 113 REMARK 465 THR A 114 REMARK 465 ASP A 115 REMARK 465 ILE A 116 REMARK 465 ASN A 117 REMARK 465 ALA A 118 REMARK 465 PHE A 119 REMARK 465 GLN A 120 REMARK 465 ASN A 121 REMARK 465 PHE A 122 REMARK 465 THR A 123 REMARK 465 LEU A 124 REMARK 465 GLU A 125 REMARK 465 ASP A 126 REMARK 465 ALA A 127 REMARK 465 GLY A 128 REMARK 465 GLY A 129 REMARK 465 ASP A 130 REMARK 465 ALA A 131 REMARK 465 ALA A 132 REMARK 465 ALA A 133 REMARK 465 PRO A 134 REMARK 465 ALA A 135 REMARK 465 ALA A 136 REMARK 465 PRO A 137 REMARK 465 ALA A 138 REMARK 465 LYS A 139 REMARK 465 GLU A 140 REMARK 465 GLU A 141 REMARK 465 LEU A 142 REMARK 465 ALA A 143 REMARK 465 LYS A 144 REMARK 465 ALA A 145 REMARK 465 GLU A 146 REMARK 465 THR A 147 REMARK 465 ALA A 148 REMARK 465 PRO A 149 REMARK 465 THR A 150 REMARK 465 PRO A 151 REMARK 465 ALA A 152 REMARK 465 SER A 153 REMARK 465 THR A 154 REMARK 465 SER A 155 REMARK 465 ALA A 156 REMARK 465 PRO A 157 REMARK 465 GLU A 158 REMARK 465 PRO A 159 REMARK 465 GLU A 160 REMARK 465 GLU A 161 REMARK 465 THR A 162 REMARK 465 THR A 163 REMARK 465 SER A 164 REMARK 465 THR A 165 REMARK 465 GLY A 166 REMARK 465 LYS A 167 REMARK 465 LEU A 168 REMARK 465 GLU A 169 REMARK 465 PRO A 170 REMARK 465 ALA A 171 REMARK 465 LEU A 172 REMARK 465 ASP A 173 REMARK 465 ARG A 174 REMARK 465 GLU A 175 REMARK 465 PRO A 176 REMARK 465 ASN A 177 REMARK 465 VAL A 178 REMARK 465 SER A 179 REMARK 465 PHE A 180 REMARK 465 ALA A 181 REMARK 465 ALA A 182 REMARK 465 LYS A 183 REMARK 465 LYS A 184 REMARK 465 LEU A 185 REMARK 465 ALA A 186 REMARK 465 HIS A 187 REMARK 465 GLU A 188 REMARK 465 LEU A 189 REMARK 465 ASP A 190 REMARK 465 VAL A 191 REMARK 465 PRO A 192 REMARK 465 LEU A 193 REMARK 465 LYS A 194 REMARK 465 ALA A 195 REMARK 465 LEU A 196 REMARK 465 LYS A 197 REMARK 465 GLY A 198 REMARK 465 THR A 199 REMARK 465 GLY A 200 REMARK 465 PRO A 201 REMARK 465 GLY A 202 REMARK 465 GLY A 203 REMARK 465 LYS A 204 REMARK 465 ILE A 205 REMARK 465 THR A 206 REMARK 465 GLU A 207 REMARK 465 GLU A 208 REMARK 465 ASP A 209 REMARK 465 VAL A 210 REMARK 465 LYS A 211 REMARK 465 LYS A 212 REMARK 465 ALA A 213 REMARK 465 ALA A 214 REMARK 465 SER A 215 REMARK 465 ALA A 216 REMARK 465 PRO A 217 REMARK 465 ALA A 218 REMARK 465 ALA A 219 REMARK 465 ALA A 220 REMARK 465 ALA A 221 REMARK 465 ALA A 222 REMARK 465 ALA A 223 REMARK 465 PRO A 224 REMARK 465 GLY A 225 REMARK 465 ALA A 226 REMARK 465 ALA A 227 REMARK 465 TYR A 228 REMARK 465 GLN A 229 REMARK 465 ASP A 230 REMARK 465 ILE A 231 REMARK 465 PRO A 232 REMARK 465 ILE A 233 REMARK 465 SER A 234 REMARK 465 ASN A 235 REMARK 465 MET A 236 REMARK 465 ARG A 237 REMARK 465 LYS A 238 REMARK 465 THR A 239 REMARK 465 ILE A 240 REMARK 465 ALA A 241 REMARK 465 THR A 242 REMARK 465 ARG A 243 REMARK 465 LEU A 244 REMARK 465 LYS A 245 REMARK 465 GLU A 246 REMARK 465 SER A 247 REMARK 465 VAL A 248 REMARK 465 SER A 249 REMARK 465 GLU A 250 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 432 -3.75 68.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-13066 RELATED DB: EMDB REMARK 900 METABOLON-EMBEDDED PYRUVATE DEHYDROGENASE COMPLEX E2 CORE AT NEAR- REMARK 900 ATOMIC RESOLUTION DBREF 7OTT A 1 459 UNP G0S4X6 G0S4X6_CHATD 1 459 SEQRES 1 A 459 MET LEU ALA GLN VAL LEU ARG ARG GLN ALA LEU GLN HIS SEQRES 2 A 459 VAL ARG LEU ALA ARG ALA ALA ALA PRO SER LEU THR ARG SEQRES 3 A 459 TRP TYR ALA SER TYR PRO PRO HIS THR ILE VAL LYS MET SEQRES 4 A 459 PRO ALA LEU SER PRO THR MET THR SER GLY ASN ILE GLY SEQRES 5 A 459 ALA TRP GLN LYS LYS PRO GLY ASP ALA ILE THR PRO GLY SEQRES 6 A 459 GLU VAL LEU VAL GLU ILE GLU THR ASP LYS ALA GLN MET SEQRES 7 A 459 ASP PHE GLU PHE GLN GLU GLU GLY VAL LEU ALA LYS ILE SEQRES 8 A 459 LEU LYS GLU THR GLY GLU LYS ASP VAL ALA VAL GLY SER SEQRES 9 A 459 PRO ILE ALA VAL LEU VAL GLU GLU GLY THR ASP ILE ASN SEQRES 10 A 459 ALA PHE GLN ASN PHE THR LEU GLU ASP ALA GLY GLY ASP SEQRES 11 A 459 ALA ALA ALA PRO ALA ALA PRO ALA LYS GLU GLU LEU ALA SEQRES 12 A 459 LYS ALA GLU THR ALA PRO THR PRO ALA SER THR SER ALA SEQRES 13 A 459 PRO GLU PRO GLU GLU THR THR SER THR GLY LYS LEU GLU SEQRES 14 A 459 PRO ALA LEU ASP ARG GLU PRO ASN VAL SER PHE ALA ALA SEQRES 15 A 459 LYS LYS LEU ALA HIS GLU LEU ASP VAL PRO LEU LYS ALA SEQRES 16 A 459 LEU LYS GLY THR GLY PRO GLY GLY LYS ILE THR GLU GLU SEQRES 17 A 459 ASP VAL LYS LYS ALA ALA SER ALA PRO ALA ALA ALA ALA SEQRES 18 A 459 ALA ALA PRO GLY ALA ALA TYR GLN ASP ILE PRO ILE SER SEQRES 19 A 459 ASN MET ARG LYS THR ILE ALA THR ARG LEU LYS GLU SER SEQRES 20 A 459 VAL SER GLU ASN PRO HIS PHE PHE VAL THR SER GLU LEU SEQRES 21 A 459 SER VAL SER LYS LEU LEU LYS LEU ARG GLN ALA LEU ASN SEQRES 22 A 459 SER SER ALA GLU GLY ARG TYR LYS LEU SER VAL ASN ASP SEQRES 23 A 459 PHE LEU ILE LYS ALA ILE ALA VAL ALA CYS LYS ARG VAL SEQRES 24 A 459 PRO ALA VAL ASN SER SER TRP ARG ASP GLY VAL ILE ARG SEQRES 25 A 459 GLN PHE ASP THR VAL ASP VAL SER VAL ALA VAL ALA THR SEQRES 26 A 459 PRO THR GLY LEU ILE THR PRO ILE VAL LYS GLY VAL GLU SEQRES 27 A 459 ALA LYS GLY LEU GLU THR ILE SER ALA THR VAL LYS GLU SEQRES 28 A 459 LEU ALA LYS LYS ALA ARG ASP GLY LYS LEU LYS PRO GLU SEQRES 29 A 459 ASP TYR GLN GLY GLY THR ILE SER ILE SER ASN MET GLY SEQRES 30 A 459 MET ASN PRO ALA VAL GLU ARG PHE THR ALA ILE ILE ASN SEQRES 31 A 459 PRO PRO GLN ALA ALA ILE LEU ALA VAL GLY THR THR LYS SEQRES 32 A 459 LYS VAL ALA VAL PRO VAL GLU ASN GLU ASP GLY THR THR SEQRES 33 A 459 GLY VAL GLU TRP ASP ASP GLN ILE VAL VAL THR ALA SER SEQRES 34 A 459 PHE ASP HIS LYS VAL VAL ASP GLY ALA VAL GLY ALA GLU SEQRES 35 A 459 TRP MET ARG GLU LEU LYS LYS VAL VAL GLU ASN PRO LEU SEQRES 36 A 459 GLU LEU LEU LEU HELIX 1 AA1 VAL A 262 ALA A 276 1 15 HELIX 2 AA2 SER A 283 VAL A 299 1 17 HELIX 3 AA3 LEU A 342 GLY A 359 1 18 HELIX 4 AA4 LYS A 362 TYR A 366 5 5 HELIX 5 AA5 ASP A 436 ASN A 453 1 18 HELIX 6 AA6 PRO A 454 LEU A 458 5 5 SHEET 1 AA1 6 PHE A 255 SER A 261 0 SHEET 2 AA1 6 GLU A 419 PHE A 430 -1 O ALA A 428 N VAL A 256 SHEET 3 AA1 6 ALA A 395 VAL A 407 -1 N VAL A 405 O ASP A 421 SHEET 4 AA1 6 ILE A 371 ASN A 375 1 N SER A 374 O VAL A 399 SHEET 5 AA1 6 ASP A 318 VAL A 321 1 N SER A 320 O ILE A 373 SHEET 6 AA1 6 ILE A 333 LYS A 335 -1 O VAL A 334 N VAL A 319 SHEET 1 AA2 2 SER A 304 TRP A 306 0 SHEET 2 AA2 2 ILE A 311 GLN A 313 -1 O ARG A 312 N SER A 305 SHEET 1 AA3 2 VAL A 323 THR A 325 0 SHEET 2 AA3 2 GLY A 328 ILE A 330 -1 O ILE A 330 N VAL A 323 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000