HEADER HYDROLASE 11-JUN-21 7OU3 TITLE CRYSTAL STRUCTURE OF TGA-AGOG, AN 8-OXOGUANINE DNA GLYCOSYLASE FROM TITLE 2 THERMOCOCCUS GAMMATOLERANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-GLYCOSYLASE/DNA LYASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 8-OXOGUANINE DNA GLYCOSYLASE,AGOG,DNA-(APURINIC OR COMPND 5 APYRIMIDINIC SITE) LYASE,AP LYASE; COMPND 6 EC: 3.2.2.-,4.2.99.18; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS GAMMATOLERANS (STRAIN DSM 15229 / SOURCE 3 JCM 11827 / EJ3); SOURCE 4 ORGANISM_TAXID: 593117; SOURCE 5 STRAIN: DSM 15229 / JCM 11827 / EJ3; SOURCE 6 GENE: TGAM_1653; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS 8-OXOGUANINE DNA GLYCOSYLASE, ARCHAEA, THERMOCOCCUS GAMMATOLERANS, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR F.COSTE,F.CONFALONIERI,B.CASTAING REVDAT 3 31-JAN-24 7OU3 1 REMARK REVDAT 2 11-JAN-23 7OU3 1 JRNL REVDAT 1 22-JUN-22 7OU3 0 JRNL AUTH C.FRANCK,G.STEPHANE,C.JULIEN,G.VIRGINIE,G.MARTINE,G.NORBERT, JRNL AUTH 2 C.FABRICE,F.DIDIER,S.M.JOSEF,C.BERTRAND JRNL TITL STRUCTURAL AND FUNCTIONAL DETERMINANTS OF THE ARCHAEAL JRNL TITL 2 8-OXOGUANINE-DNA GLYCOSYLASE AGOG FOR DNA DAMAGE RECOGNITION JRNL TITL 3 AND PROCESSING. JRNL REF NUCLEIC ACIDS RES. V. 50 11072 2022 JRNL REFN ESSN 1362-4962 JRNL PMID 36300625 JRNL DOI 10.1093/NAR/GKAC932 REMARK 2 REMARK 2 RESOLUTION. 1.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19_4092 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 88699 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 4390 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.1500 - 4.6300 0.99 3043 150 0.1864 0.2237 REMARK 3 2 4.6300 - 3.6700 1.00 2900 139 0.1477 0.1772 REMARK 3 3 3.6700 - 3.2100 1.00 2902 145 0.1629 0.1509 REMARK 3 4 3.2100 - 2.9200 1.00 2827 166 0.1691 0.1738 REMARK 3 5 2.9100 - 2.7100 1.00 2841 141 0.1653 0.1838 REMARK 3 6 2.7100 - 2.5500 1.00 2836 158 0.1682 0.1772 REMARK 3 7 2.5500 - 2.4200 1.00 2791 170 0.1677 0.2032 REMARK 3 8 2.4200 - 2.3100 1.00 2818 136 0.1657 0.1870 REMARK 3 9 2.3100 - 2.2200 1.00 2852 122 0.1672 0.1835 REMARK 3 10 2.2200 - 2.1500 1.00 2820 139 0.1662 0.1981 REMARK 3 11 2.1500 - 2.0800 1.00 2793 150 0.1708 0.1956 REMARK 3 12 2.0800 - 2.0200 1.00 2802 151 0.1650 0.1683 REMARK 3 13 2.0200 - 1.9700 1.00 2785 154 0.1906 0.2058 REMARK 3 14 1.9700 - 1.9200 1.00 2790 138 0.1776 0.1946 REMARK 3 15 1.9200 - 1.8800 1.00 2832 134 0.1698 0.2281 REMARK 3 16 1.8800 - 1.8400 1.00 2776 147 0.1687 0.2035 REMARK 3 17 1.8400 - 1.8000 1.00 2775 163 0.1690 0.1785 REMARK 3 18 1.8000 - 1.7700 1.00 2768 168 0.1738 0.1850 REMARK 3 19 1.7700 - 1.7300 1.00 2792 143 0.1722 0.1927 REMARK 3 20 1.7300 - 1.7000 1.00 2776 146 0.1877 0.2401 REMARK 3 21 1.7000 - 1.6800 1.00 2779 144 0.2024 0.2247 REMARK 3 22 1.6800 - 1.6500 1.00 2780 158 0.2075 0.2298 REMARK 3 23 1.6500 - 1.6300 1.00 2796 130 0.2076 0.2117 REMARK 3 24 1.6300 - 1.6000 1.00 2803 133 0.2127 0.2087 REMARK 3 25 1.6000 - 1.5800 1.00 2772 137 0.1955 0.2295 REMARK 3 26 1.5800 - 1.5600 1.00 2747 176 0.2024 0.2352 REMARK 3 27 1.5600 - 1.5400 1.00 2773 142 0.2091 0.2148 REMARK 3 28 1.5400 - 1.5200 1.00 2805 132 0.2107 0.2668 REMARK 3 29 1.5200 - 1.5100 1.00 2782 143 0.2232 0.2384 REMARK 3 30 1.5100 - 1.4900 1.00 2753 135 0.2351 0.2577 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.136 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.472 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.49 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4011 REMARK 3 ANGLE : 0.766 5457 REMARK 3 CHIRALITY : 0.070 607 REMARK 3 PLANARITY : 0.007 705 REMARK 3 DIHEDRAL : 11.618 1487 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 94.3792 180.0448 281.9879 REMARK 3 T TENSOR REMARK 3 T11: 0.1988 T22: 0.2234 REMARK 3 T33: 0.2607 T12: 0.0442 REMARK 3 T13: -0.0061 T23: 0.0142 REMARK 3 L TENSOR REMARK 3 L11: 3.3915 L22: 2.8533 REMARK 3 L33: 1.8522 L12: -2.5799 REMARK 3 L13: -2.3201 L23: 1.5911 REMARK 3 S TENSOR REMARK 3 S11: -0.1759 S12: -0.3107 S13: -0.3171 REMARK 3 S21: 0.1369 S22: 0.1083 S23: -0.0895 REMARK 3 S31: 0.2574 S32: 0.3263 S33: 0.0613 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): 81.2149 196.7979 279.1151 REMARK 3 T TENSOR REMARK 3 T11: 0.1226 T22: 0.1579 REMARK 3 T33: 0.1474 T12: 0.0090 REMARK 3 T13: 0.0184 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 1.4364 L22: 1.9922 REMARK 3 L33: 1.9782 L12: 0.4577 REMARK 3 L13: -0.3545 L23: -0.0915 REMARK 3 S TENSOR REMARK 3 S11: 0.0697 S12: 0.0146 S13: 0.0313 REMARK 3 S21: -0.0184 S22: -0.0346 S23: 0.0541 REMARK 3 S31: -0.1172 S32: -0.0532 S33: -0.0368 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 181 THROUGH 263 ) REMARK 3 ORIGIN FOR THE GROUP (A): 97.7847 180.0761 275.8990 REMARK 3 T TENSOR REMARK 3 T11: 0.2859 T22: 0.2202 REMARK 3 T33: 0.3787 T12: 0.0247 REMARK 3 T13: 0.0672 T23: 0.0121 REMARK 3 L TENSOR REMARK 3 L11: 5.9995 L22: 3.7827 REMARK 3 L33: 1.9959 L12: -2.3366 REMARK 3 L13: -2.4724 L23: 1.7924 REMARK 3 S TENSOR REMARK 3 S11: 0.2572 S12: -0.1374 S13: 0.3101 REMARK 3 S21: -0.4053 S22: -0.0210 S23: -0.7726 REMARK 3 S31: -0.1971 S32: 0.3367 S33: -0.2115 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 14 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): 79.0508 189.3928 325.1382 REMARK 3 T TENSOR REMARK 3 T11: 0.2732 T22: 0.2934 REMARK 3 T33: 0.2776 T12: -0.0952 REMARK 3 T13: -0.0321 T23: 0.0722 REMARK 3 L TENSOR REMARK 3 L11: 1.3122 L22: 2.7091 REMARK 3 L33: 4.0367 L12: 1.2458 REMARK 3 L13: 0.4516 L23: 0.1723 REMARK 3 S TENSOR REMARK 3 S11: -0.3787 S12: -0.0974 S13: 0.0570 REMARK 3 S21: 0.0205 S22: -0.0209 S23: -0.6286 REMARK 3 S31: -0.4800 S32: 0.5755 S33: 0.2748 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 40 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.5582 195.0425 305.2684 REMARK 3 T TENSOR REMARK 3 T11: 0.1174 T22: 0.1217 REMARK 3 T33: 0.1209 T12: -0.0017 REMARK 3 T13: 0.0012 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.8009 L22: 2.2916 REMARK 3 L33: 1.6697 L12: -0.0292 REMARK 3 L13: -0.0602 L23: -0.2511 REMARK 3 S TENSOR REMARK 3 S11: -0.0272 S12: 0.0143 S13: -0.0230 REMARK 3 S21: 0.0177 S22: 0.0259 S23: 0.0892 REMARK 3 S31: 0.0494 S32: -0.0622 S33: -0.0002 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 181 THROUGH 263 ) REMARK 3 ORIGIN FOR THE GROUP (A): 79.1706 189.8847 317.4516 REMARK 3 T TENSOR REMARK 3 T11: 0.4496 T22: 0.4084 REMARK 3 T33: 0.3851 T12: -0.2238 REMARK 3 T13: 0.0434 T23: 0.0361 REMARK 3 L TENSOR REMARK 3 L11: 2.4840 L22: 3.0247 REMARK 3 L33: 1.7671 L12: 0.1316 REMARK 3 L13: 1.0756 L23: -0.4784 REMARK 3 S TENSOR REMARK 3 S11: -0.4569 S12: 0.3620 S13: 0.1881 REMARK 3 S21: -0.4184 S22: 0.2054 S23: -0.8968 REMARK 3 S31: -0.7922 S32: 0.8208 S33: 0.1321 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7OU3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1292116400. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 88713 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.490 REMARK 200 RESOLUTION RANGE LOW (A) : 69.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.52 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.84400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1XQO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES, NACL, PEG 1500, GLYCEROL, PH REMARK 280 7.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.71450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.93850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.22600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.93850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.71450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.22600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 LEU A 3 REMARK 465 ASP A 4 REMARK 465 ARG A 5 REMARK 465 PHE A 6 REMARK 465 VAL A 7 REMARK 465 ARG A 8 REMARK 465 ILE A 9 REMARK 465 LYS A 10 REMARK 465 GLY A 237 REMARK 465 GLY A 238 REMARK 465 LYS A 239 REMARK 465 GLY A 240 REMARK 465 GLU A 241 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 LEU B 3 REMARK 465 ASP B 4 REMARK 465 ARG B 5 REMARK 465 PHE B 6 REMARK 465 VAL B 7 REMARK 465 ARG B 8 REMARK 465 ILE B 9 REMARK 465 LYS B 10 REMARK 465 TYR B 11 REMARK 465 ARG B 12 REMARK 465 GLU B 13 REMARK 465 GLY B 237 REMARK 465 GLY B 238 REMARK 465 LYS B 239 REMARK 465 LEU B 246 REMARK 465 LYS B 247 REMARK 465 LYS B 248 REMARK 465 HIS B 249 REMARK 465 CYS B 250 REMARK 465 GLY B 251 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 12 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 15 CG OD1 ND2 REMARK 470 LYS A 39 CE NZ REMARK 470 LYS A 77 NZ REMARK 470 GLU A 91 CG CD OE1 OE2 REMARK 470 GLU A 99 CG CD OE1 OE2 REMARK 470 LYS A 109 CG CD CE NZ REMARK 470 ASN A 143 CG OD1 ND2 REMARK 470 LYS A 157 CE NZ REMARK 470 ARG A 197 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 203 CD CE NZ REMARK 470 GLU A 219 CG CD OE1 OE2 REMARK 470 GLU A 220 CG CD OE1 OE2 REMARK 470 LEU A 243 CG CD1 CD2 REMARK 470 ARG A 244 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 246 CG CD1 CD2 REMARK 470 LYS A 247 CG CD CE NZ REMARK 470 LYS A 248 CG CD CE NZ REMARK 470 GLU A 252 CG CD OE1 OE2 REMARK 470 LYS A 253 CG CD CE NZ REMARK 470 GLU A 255 CG CD OE1 OE2 REMARK 470 ARG A 256 NE CZ NH1 NH2 REMARK 470 LEU A 258 CG CD1 CD2 REMARK 470 ASP A 262 CG OD1 OD2 REMARK 470 ASN B 15 CG OD1 ND2 REMARK 470 GLU B 16 CG CD OE1 OE2 REMARK 470 LYS B 17 CG CD CE NZ REMARK 470 ASP B 31 CG OD1 OD2 REMARK 470 LYS B 39 CD CE NZ REMARK 470 LYS B 109 CG CD CE NZ REMARK 470 LYS B 157 NZ REMARK 470 LYS B 159 CE NZ REMARK 470 ASP B 195 CG OD1 OD2 REMARK 470 ARG B 197 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 199 CG OD1 ND2 REMARK 470 LYS B 203 CG CD CE NZ REMARK 470 GLU B 208 CG CD OE1 OE2 REMARK 470 ARG B 216 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 235 CG1 CG2 REMARK 470 GLU B 241 CG CD OE1 OE2 REMARK 470 LEU B 243 CG CD1 CD2 REMARK 470 ARG B 244 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 252 CG CD OE1 OE2 REMARK 470 LYS B 253 CG CD CE NZ REMARK 470 GLU B 255 CG CD OE1 OE2 REMARK 470 ARG B 256 NE CZ NH1 NH2 REMARK 470 LEU B 258 CG CD1 CD2 REMARK 470 ARG B 261 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 263 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 58 O HOH B 401 2.05 REMARK 500 O HOH A 511 O HOH B 499 2.13 REMARK 500 OH TYR A 140 OE1 GLU A 151 2.13 REMARK 500 O HOH B 424 O HOH B 474 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 95 -66.82 -122.80 REMARK 500 ASN A 111 58.91 -146.60 REMARK 500 ASN A 143 33.18 -150.33 REMARK 500 ASP B 56 87.12 -160.90 REMARK 500 ASN B 111 58.33 -150.38 REMARK 500 LYS B 253 6.35 -68.33 REMARK 500 REMARK 500 REMARK: NULL DBREF 7OU3 A 1 263 UNP C5A7E3 C5A7E3_THEGJ 1 263 DBREF 7OU3 B 1 263 UNP C5A7E3 C5A7E3_THEGJ 1 263 SEQADV 7OU3 GLY A -2 UNP C5A7E3 EXPRESSION TAG SEQADV 7OU3 SER A -1 UNP C5A7E3 EXPRESSION TAG SEQADV 7OU3 HIS A 0 UNP C5A7E3 EXPRESSION TAG SEQADV 7OU3 GLY B -2 UNP C5A7E3 EXPRESSION TAG SEQADV 7OU3 SER B -1 UNP C5A7E3 EXPRESSION TAG SEQADV 7OU3 HIS B 0 UNP C5A7E3 EXPRESSION TAG SEQRES 1 A 266 GLY SER HIS MET THR LEU ASP ARG PHE VAL ARG ILE LYS SEQRES 2 A 266 TYR ARG GLU ASP ASN GLU LYS VAL ASN ARG LEU VAL GLU SEQRES 3 A 266 ILE LEU ARG GLU LEU GLY LEU ASP CYS ALA ARG THR ILE SEQRES 4 A 266 GLU GLU LYS VAL ASP LEU GLN PHE ASP ALA LEU ARG ASN SEQRES 5 A 266 LEU ARG GLU ASN LEU LYS ASP ASP GLU LEU PHE ILE LYS SEQRES 6 A 266 LEU VAL ILE ALA ASN ALA LEU VAL SER TYR GLN LEU SER SEQRES 7 A 266 GLY LYS GLY GLU ASP TRP TRP TRP GLU PHE SER ARG TYR SEQRES 8 A 266 PHE SER GLU ASN PRO PRO GLU ASP ILE VAL GLU ALA TYR SEQRES 9 A 266 SER SER PHE LEU PRO ASN SER LYS THR ASN ARG ARG LEU SEQRES 10 A 266 VAL ALA GLY LYS LEU LYS ARG ILE GLU ARG VAL GLU PRO SEQRES 11 A 266 PHE LEU SER PRO LEU SER ILE SER GLU ILE ARG ASP TYR SEQRES 12 A 266 TYR PHE ASN GLY MET GLU ARG LEU ARG ASP GLU LEU ALA SEQRES 13 A 266 ARG VAL MET LYS ALA LYS ARG SER ALA LYS THR ILE VAL SEQRES 14 A 266 PHE ALA VAL LYS MET PHE GLY TYR ALA GLY ARG ILE ALA SEQRES 15 A 266 PHE SER ALA PHE VAL PRO TYR PRO MET ALA ILE GLU ILE SEQRES 16 A 266 PRO ASP ASP VAL ARG ILE ASN ALA TYR THR LYS ARG PHE SEQRES 17 A 266 THR SER GLU PRO PRO VAL SER PHE TRP GLY ARG ILE ALA SEQRES 18 A 266 GLU GLU THR GLY ILE PRO PRO LEU HIS ILE ASP SER ILE SEQRES 19 A 266 LEU TRP PRO VAL LEU GLY GLY LYS GLY GLU VAL LEU ARG SEQRES 20 A 266 ARG LEU LYS LYS HIS CYS GLY GLU LYS ALA GLU ARG ILE SEQRES 21 A 266 LEU GLU LEU ARG ASP LEU SEQRES 1 B 266 GLY SER HIS MET THR LEU ASP ARG PHE VAL ARG ILE LYS SEQRES 2 B 266 TYR ARG GLU ASP ASN GLU LYS VAL ASN ARG LEU VAL GLU SEQRES 3 B 266 ILE LEU ARG GLU LEU GLY LEU ASP CYS ALA ARG THR ILE SEQRES 4 B 266 GLU GLU LYS VAL ASP LEU GLN PHE ASP ALA LEU ARG ASN SEQRES 5 B 266 LEU ARG GLU ASN LEU LYS ASP ASP GLU LEU PHE ILE LYS SEQRES 6 B 266 LEU VAL ILE ALA ASN ALA LEU VAL SER TYR GLN LEU SER SEQRES 7 B 266 GLY LYS GLY GLU ASP TRP TRP TRP GLU PHE SER ARG TYR SEQRES 8 B 266 PHE SER GLU ASN PRO PRO GLU ASP ILE VAL GLU ALA TYR SEQRES 9 B 266 SER SER PHE LEU PRO ASN SER LYS THR ASN ARG ARG LEU SEQRES 10 B 266 VAL ALA GLY LYS LEU LYS ARG ILE GLU ARG VAL GLU PRO SEQRES 11 B 266 PHE LEU SER PRO LEU SER ILE SER GLU ILE ARG ASP TYR SEQRES 12 B 266 TYR PHE ASN GLY MET GLU ARG LEU ARG ASP GLU LEU ALA SEQRES 13 B 266 ARG VAL MET LYS ALA LYS ARG SER ALA LYS THR ILE VAL SEQRES 14 B 266 PHE ALA VAL LYS MET PHE GLY TYR ALA GLY ARG ILE ALA SEQRES 15 B 266 PHE SER ALA PHE VAL PRO TYR PRO MET ALA ILE GLU ILE SEQRES 16 B 266 PRO ASP ASP VAL ARG ILE ASN ALA TYR THR LYS ARG PHE SEQRES 17 B 266 THR SER GLU PRO PRO VAL SER PHE TRP GLY ARG ILE ALA SEQRES 18 B 266 GLU GLU THR GLY ILE PRO PRO LEU HIS ILE ASP SER ILE SEQRES 19 B 266 LEU TRP PRO VAL LEU GLY GLY LYS GLY GLU VAL LEU ARG SEQRES 20 B 266 ARG LEU LYS LYS HIS CYS GLY GLU LYS ALA GLU ARG ILE SEQRES 21 B 266 LEU GLU LEU ARG ASP LEU HET CL A 301 1 HET GOL B 301 6 HET GOL B 302 6 HET CL B 303 1 HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 CL 2(CL 1-) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 7 HOH *319(H2 O) HELIX 1 AA1 ASP A 14 VAL A 40 1 27 HELIX 2 AA2 ASP A 41 LYS A 55 1 15 HELIX 3 AA3 ASP A 56 VAL A 70 1 15 HELIX 4 AA4 LYS A 77 ASN A 92 1 16 HELIX 5 AA5 ASP A 96 SER A 108 1 13 HELIX 6 AA6 LEU A 114 SER A 130 1 17 HELIX 7 AA7 SER A 133 GLY A 144 1 12 HELIX 8 AA8 GLY A 144 LYS A 157 1 14 HELIX 9 AA9 ALA A 162 SER A 181 1 20 HELIX 10 AB1 ASP A 195 LYS A 203 1 9 HELIX 11 AB2 PRO A 209 GLY A 222 1 14 HELIX 12 AB3 PRO A 224 LEU A 236 1 13 HELIX 13 AB4 LEU A 243 CYS A 250 1 8 HELIX 14 AB5 LYS A 253 ASP A 262 1 10 HELIX 15 AB6 ASN B 15 VAL B 40 1 26 HELIX 16 AB7 ASP B 41 LYS B 55 1 15 HELIX 17 AB8 ASP B 56 VAL B 70 1 15 HELIX 18 AB9 LYS B 77 ASN B 92 1 16 HELIX 19 AC1 ASP B 96 SER B 108 1 13 HELIX 20 AC2 LEU B 114 SER B 130 1 17 HELIX 21 AC3 SER B 133 ASN B 143 1 11 HELIX 22 AC4 GLY B 144 LYS B 157 1 14 HELIX 23 AC5 ALA B 162 SER B 181 1 20 HELIX 24 AC6 ASP B 195 LYS B 203 1 9 HELIX 25 AC7 PRO B 209 GLY B 222 1 14 HELIX 26 AC8 PRO B 224 LEU B 236 1 13 HELIX 27 AC9 GLU B 241 ARG B 245 1 5 HELIX 28 AD1 LYS B 253 ASP B 262 1 10 CRYST1 61.429 62.452 139.877 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016279 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016012 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007149 0.00000