data_7OVC # _entry.id 7OVC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7OVC pdb_00007ovc 10.2210/pdb7ovc/pdb WWPDB D_1292116464 ? ? BMRB 34638 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Structure of the human UFC1 protein in complex with the UBA5 C-terminal UFC1-binding motif.' _pdbx_database_related.db_id 34638 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 7OVC _pdbx_database_status.recvd_initial_deposition_date 2021-06-14 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Wesch, W.' 1 ? 'Loehr, F.' 2 0000-0001-6399-9497 'Rogova, N.' 3 ? 'Doetsch, V.' 4 0000-0001-5720-212X 'Rogov, V.V.' 5 0000-0002-2164-2323 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country CH _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Int J Mol Sci' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1422-0067 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 22 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'A Concerted Action of UBA5 C-Terminal Unstructured Regions Is Important for Transfer of Activated UFM1 to UFC1.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.3390/ijms22147390 _citation.pdbx_database_id_PubMed 34299007 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wesch, N.' 1 ? primary 'Lohr, F.' 2 0000-0001-6399-9497 primary 'Rogova, N.' 3 ? primary 'Dotsch, V.' 4 0000-0001-5720-212X primary 'Rogov, V.V.' 5 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7OVC _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.000 _cell.length_a_esd ? _cell.length_b 1.000 _cell.length_b_esd ? _cell.length_c 1.000 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OVC _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ubiquitin-fold modifier-conjugating enzyme 1' 19486.395 1 ? ? ? ? 2 polymer man 'Ubiquitin-like modifier-activating enzyme 5' 3034.459 1 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'Ufm1-conjugating enzyme 1' 2 'Ubiquitin-activating enzyme 5,ThiFP1,UFM1-activating enzyme,Ubiquitin-activating enzyme E1 domain-containing protein 1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MADEATRRVVSEIPVLKTNAGPRDRELWVQRLKEEYQSLIRYVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEF DIEFDIPITYPTTAPEIAVPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLMALGLGPWLAVEIPDLIQKGVIQ HKEKCNQ ; ;MADEATRRVVSEIPVLKTNAGPRDRELWVQRLKEEYQSLIRYVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEF DIEFDIPITYPTTAPEIAVPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLMALGLGPWLAVEIPDLIQKGVIQ HKEKCNQ ; A ? 2 'polypeptide(L)' no no GMSVTELTVEDSGESLEDLMAKMKNMW GMSVTELTVEDSGESLEDLMAKMKNMW B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 ASP n 1 4 GLU n 1 5 ALA n 1 6 THR n 1 7 ARG n 1 8 ARG n 1 9 VAL n 1 10 VAL n 1 11 SER n 1 12 GLU n 1 13 ILE n 1 14 PRO n 1 15 VAL n 1 16 LEU n 1 17 LYS n 1 18 THR n 1 19 ASN n 1 20 ALA n 1 21 GLY n 1 22 PRO n 1 23 ARG n 1 24 ASP n 1 25 ARG n 1 26 GLU n 1 27 LEU n 1 28 TRP n 1 29 VAL n 1 30 GLN n 1 31 ARG n 1 32 LEU n 1 33 LYS n 1 34 GLU n 1 35 GLU n 1 36 TYR n 1 37 GLN n 1 38 SER n 1 39 LEU n 1 40 ILE n 1 41 ARG n 1 42 TYR n 1 43 VAL n 1 44 GLU n 1 45 ASN n 1 46 ASN n 1 47 LYS n 1 48 ASN n 1 49 ALA n 1 50 ASP n 1 51 ASN n 1 52 ASP n 1 53 TRP n 1 54 PHE n 1 55 ARG n 1 56 LEU n 1 57 GLU n 1 58 SER n 1 59 ASN n 1 60 LYS n 1 61 GLU n 1 62 GLY n 1 63 THR n 1 64 ARG n 1 65 TRP n 1 66 PHE n 1 67 GLY n 1 68 LYS n 1 69 CYS n 1 70 TRP n 1 71 TYR n 1 72 ILE n 1 73 HIS n 1 74 ASP n 1 75 LEU n 1 76 LEU n 1 77 LYS n 1 78 TYR n 1 79 GLU n 1 80 PHE n 1 81 ASP n 1 82 ILE n 1 83 GLU n 1 84 PHE n 1 85 ASP n 1 86 ILE n 1 87 PRO n 1 88 ILE n 1 89 THR n 1 90 TYR n 1 91 PRO n 1 92 THR n 1 93 THR n 1 94 ALA n 1 95 PRO n 1 96 GLU n 1 97 ILE n 1 98 ALA n 1 99 VAL n 1 100 PRO n 1 101 GLU n 1 102 LEU n 1 103 ASP n 1 104 GLY n 1 105 LYS n 1 106 THR n 1 107 ALA n 1 108 LYS n 1 109 MET n 1 110 TYR n 1 111 ARG n 1 112 GLY n 1 113 GLY n 1 114 LYS n 1 115 ILE n 1 116 CYS n 1 117 LEU n 1 118 THR n 1 119 ASP n 1 120 HIS n 1 121 PHE n 1 122 LYS n 1 123 PRO n 1 124 LEU n 1 125 TRP n 1 126 ALA n 1 127 ARG n 1 128 ASN n 1 129 VAL n 1 130 PRO n 1 131 LYS n 1 132 PHE n 1 133 GLY n 1 134 LEU n 1 135 ALA n 1 136 HIS n 1 137 LEU n 1 138 MET n 1 139 ALA n 1 140 LEU n 1 141 GLY n 1 142 LEU n 1 143 GLY n 1 144 PRO n 1 145 TRP n 1 146 LEU n 1 147 ALA n 1 148 VAL n 1 149 GLU n 1 150 ILE n 1 151 PRO n 1 152 ASP n 1 153 LEU n 1 154 ILE n 1 155 GLN n 1 156 LYS n 1 157 GLY n 1 158 VAL n 1 159 ILE n 1 160 GLN n 1 161 HIS n 1 162 LYS n 1 163 GLU n 1 164 LYS n 1 165 CYS n 1 166 ASN n 1 167 GLN n 2 1 GLY n 2 2 MET n 2 3 SER n 2 4 VAL n 2 5 THR n 2 6 GLU n 2 7 LEU n 2 8 THR n 2 9 VAL n 2 10 GLU n 2 11 ASP n 2 12 SER n 2 13 GLY n 2 14 GLU n 2 15 SER n 2 16 LEU n 2 17 GLU n 2 18 ASP n 2 19 LEU n 2 20 MET n 2 21 ALA n 2 22 LYS n 2 23 MET n 2 24 LYS n 2 25 ASN n 2 26 MET n 2 27 TRP n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 167 Human ? 'UFC1, CGI-126, HSPC155' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? 'NEB T7 express' ? ? ? ? ? ? ? Plasmid ? ? ? pET39_Ub19 ? ? 2 1 sample 'Biological sequence' 1 27 Human ? 'UBA5, UBE1DC1' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? 'NEB T7 Express' ? ? ? ? ? ? ? Plasmid ? ? ? pET39_Ub19 ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP UFC1_HUMAN Q9Y3C8 ? 1 ;MADEATRRVVSEIPVLKTNAGPRDRELWVQRLKEEYQSLIRYVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEF DIEFDIPITYPTTAPEIAVPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLMALGLGPWLAVEIPDLIQKGVIQ HKEKCNQ ; 1 2 UNP UBA5_HUMAN Q9GZZ9 ? 2 SVTELTVEDSGESLEDLMAKMKNM 381 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7OVC A 1 ? 167 ? Q9Y3C8 1 ? 167 ? 1 167 2 2 7OVC B 3 ? 26 ? Q9GZZ9 381 ? 404 ? 381 404 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 2 7OVC GLY B 1 ? UNP Q9GZZ9 ? ? 'expression tag' 379 1 2 7OVC MET B 2 ? UNP Q9GZZ9 ? ? 'expression tag' 380 2 2 7OVC TRP B 27 ? UNP Q9GZZ9 ? ? 'expression tag' 405 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '3D [15N,1H]-TROSY-(H)C(CC)(CO)NH-TOCSY' 1 isotropic 2 1 1 '3D [15N,1H]-TROSY-H(C)(CC)(CO)NH-TOCSY' 1 isotropic 3 1 1 '3D BEST-[15N,1H]-TROSY-HNCACB' 4 isotropic 4 1 1 '3D F1-13C/15N-filtered NOESY-[13C,1H]-HSQC' 4 isotropic 5 1 1 '3D F1-13C/15N-filtered NOESY-[15N,1H]-SOFAST-HMQC' 4 isotropic 6 1 1 '3D F1-13C/15N-filtered NOESY-[13C,1H]-SOFAST-HMQC (aro)' 4 isotropic 7 1 1 '3D NOESY-[13C,1H]-SOFAST-HMQC (aro)' 4 isotropic 8 1 1 '3D NOESY-[13C,1H]-HSQC (aliphatic region)' 4 isotropic 9 1 1 '3D NOESY-BEST-[15N,1H]-TROSY' 4 isotropic 10 1 2 '3D BEST-[15N,1H]-TROSY-HNCA' 4 isotropic 11 1 2 '3D BEST-[15N,1H]-TROSY-HNCACB' 4 isotropic 12 1 2 '3D F1-13C/15N-filtered NOESY-[13C,1H]-HSQC' 4 isotropic 13 1 2 '3D [15N,1H]-TROSY-(H)C(CC)(CO)NH-TOCSY' 1 isotropic 14 1 2 '3D NOESY [13C,1H]-HSQC' 3 isotropic 15 1 2 '3D [15N,1H]-TROSY-H(CC)(CO)NH-TOCSY' 5 isotropic 16 1 2 '3D NOESY-[15N,1H]-SOFAST-HMQC' 2 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure AMBIENT _pdbx_nmr_exptl_sample_conditions.pH 7.5 _pdbx_nmr_exptl_sample_conditions.ionic_strength 100 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err 0.2 _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label Condition_1 _pdbx_nmr_exptl_sample_conditions.pH_err 0.05 _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err 0.01 _pdbx_nmr_exptl_sample_conditions.temperature_err 0.2 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 ;1.0 mM [U-100% 13C; U-100% 15N] Ubiquitin-fold modifier-conjugating enzyme 1, 1.0 mM Ubiquitin-like modifier-activating enzyme 5, 50 mM TRIS, 100 mM sodium chloride, 2 mM TCEP, 5 mM AEBSF protease inhibitor, 0.15 mM DSS, 95% H2O/5% D2O ; '95% H2O/5% D2O' 13C,15N-UFC1_NL-UBA5-R3 solution ? 2 ;1.2 mM Ubiquitin-fold modifier-conjugating enzyme 1, 0.3 mM [U-100% 13C; U-100% 15N] Ubiquitin-like modifier-activating enzyme 5, 50 mM TRIS, 100 mM sodium chloride, 2 mM TCEP, 5 mM AEBSF protease inhibitor, 0.15 mM DSS, 95% H2O/5% D2O ; '95% H2O/5% D2O' 13C,15N-UBA5-R3_NL-UFC1 solution ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 5 'AVANCE II' ? Bruker 600 ? 1 'AVANCE III HD' ? Bruker 700 ? 2 'AVANCE III HD' ? Bruker 800 ? 3 'AVANCE NEO' ? Bruker 900 ? 4 'AVANCE III' ? Bruker 950 ? # _pdbx_nmr_refine.entry_id 7OVC _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 4 # _pdbx_nmr_ensemble.entry_id 7OVC _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 7OVC _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 collection TopSpin 3.6.2 'Bruker Biospin' 2 'chemical shift assignment' Sparky 3.114 Goddard 3 'structure calculation' CYANA 3.98 'Guntert, Mumenthaler and Wuthrich' 4 refinement OPALp 1.4 'Koradi, R., Billeter, M. and Guentert, P' 5 'peak picking' Sparky 3.114 Goddard # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7OVC _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 7OVC _struct.title 'Structure of the human UFC1 protein in complex with the UBA5 C-terminal UFC1-binding motif.' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7OVC _struct_keywords.text 'UFM1, UBA5, UFC1, ufmylation, complex structure, LIGASE' _struct_keywords.pdbx_keywords LIGASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ALA A 2 ? ILE A 13 ? ALA A 2 ILE A 13 1 ? 12 HELX_P HELX_P2 AA2 ASP A 24 ? ALA A 49 ? ASP A 24 ALA A 49 1 ? 26 HELX_P HELX_P3 AA3 VAL A 99 ? ASP A 103 ? VAL A 99 ASP A 103 5 ? 5 HELX_P HELX_P4 AA4 HIS A 120 ? ASN A 128 ? HIS A 120 ASN A 128 1 ? 9 HELX_P HELX_P5 AA5 GLY A 133 ? GLY A 141 ? GLY A 133 GLY A 141 1 ? 9 HELX_P HELX_P6 AA6 GLY A 141 ? GLY A 157 ? GLY A 141 GLY A 157 1 ? 17 HELX_P HELX_P7 AA7 LYS A 162 ? ASN A 166 ? LYS A 162 ASN A 166 5 ? 5 HELX_P HELX_P8 AA8 SER B 15 ? TRP B 27 ? SER B 393 TRP B 405 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 PHE A 54 ? SER A 58 ? PHE A 54 SER A 58 AA1 2 ARG A 64 ? HIS A 73 ? ARG A 64 HIS A 73 AA1 3 LEU A 76 ? ASP A 85 ? LEU A 76 ASP A 85 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N GLU A 57 ? N GLU A 57 O PHE A 66 ? O PHE A 66 AA1 2 3 N TRP A 65 ? N TRP A 65 O PHE A 84 ? O PHE A 84 # _database_PDB_matrix.entry_id 7OVC _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 7OVC _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 ALA 2 2 2 ALA ALA A . n A 1 3 ASP 3 3 3 ASP ASP A . n A 1 4 GLU 4 4 4 GLU GLU A . n A 1 5 ALA 5 5 5 ALA ALA A . n A 1 6 THR 6 6 6 THR THR A . n A 1 7 ARG 7 7 7 ARG ARG A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 SER 11 11 11 SER SER A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 PRO 14 14 14 PRO PRO A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 LYS 17 17 17 LYS LYS A . n A 1 18 THR 18 18 18 THR THR A . n A 1 19 ASN 19 19 19 ASN ASN A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 PRO 22 22 22 PRO PRO A . n A 1 23 ARG 23 23 23 ARG ARG A . n A 1 24 ASP 24 24 24 ASP ASP A . n A 1 25 ARG 25 25 25 ARG ARG A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 TRP 28 28 28 TRP TRP A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 GLN 30 30 30 GLN GLN A . n A 1 31 ARG 31 31 31 ARG ARG A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 LYS 33 33 33 LYS LYS A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 TYR 36 36 36 TYR TYR A . n A 1 37 GLN 37 37 37 GLN GLN A . n A 1 38 SER 38 38 38 SER SER A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 ILE 40 40 40 ILE ILE A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 TYR 42 42 42 TYR TYR A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 GLU 44 44 44 GLU GLU A . n A 1 45 ASN 45 45 45 ASN ASN A . n A 1 46 ASN 46 46 46 ASN ASN A . n A 1 47 LYS 47 47 47 LYS LYS A . n A 1 48 ASN 48 48 48 ASN ASN A . n A 1 49 ALA 49 49 49 ALA ALA A . n A 1 50 ASP 50 50 50 ASP ASP A . n A 1 51 ASN 51 51 51 ASN ASN A . n A 1 52 ASP 52 52 52 ASP ASP A . n A 1 53 TRP 53 53 53 TRP TRP A . n A 1 54 PHE 54 54 54 PHE PHE A . n A 1 55 ARG 55 55 55 ARG ARG A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 SER 58 58 58 SER SER A . n A 1 59 ASN 59 59 59 ASN ASN A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 GLU 61 61 61 GLU GLU A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 THR 63 63 63 THR THR A . n A 1 64 ARG 64 64 64 ARG ARG A . n A 1 65 TRP 65 65 65 TRP TRP A . n A 1 66 PHE 66 66 66 PHE PHE A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 LYS 68 68 68 LYS LYS A . n A 1 69 CYS 69 69 69 CYS CYS A . n A 1 70 TRP 70 70 70 TRP TRP A . n A 1 71 TYR 71 71 71 TYR TYR A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 HIS 73 73 73 HIS HIS A . n A 1 74 ASP 74 74 74 ASP ASP A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 LYS 77 77 77 LYS LYS A . n A 1 78 TYR 78 78 78 TYR TYR A . n A 1 79 GLU 79 79 79 GLU GLU A . n A 1 80 PHE 80 80 80 PHE PHE A . n A 1 81 ASP 81 81 81 ASP ASP A . n A 1 82 ILE 82 82 82 ILE ILE A . n A 1 83 GLU 83 83 83 GLU GLU A . n A 1 84 PHE 84 84 84 PHE PHE A . n A 1 85 ASP 85 85 85 ASP ASP A . n A 1 86 ILE 86 86 86 ILE ILE A . n A 1 87 PRO 87 87 87 PRO PRO A . n A 1 88 ILE 88 88 88 ILE ILE A . n A 1 89 THR 89 89 89 THR THR A . n A 1 90 TYR 90 90 90 TYR TYR A . n A 1 91 PRO 91 91 91 PRO PRO A . n A 1 92 THR 92 92 92 THR THR A . n A 1 93 THR 93 93 93 THR THR A . n A 1 94 ALA 94 94 94 ALA ALA A . n A 1 95 PRO 95 95 95 PRO PRO A . n A 1 96 GLU 96 96 96 GLU GLU A . n A 1 97 ILE 97 97 97 ILE ILE A . n A 1 98 ALA 98 98 98 ALA ALA A . n A 1 99 VAL 99 99 99 VAL VAL A . n A 1 100 PRO 100 100 100 PRO PRO A . n A 1 101 GLU 101 101 101 GLU GLU A . n A 1 102 LEU 102 102 102 LEU LEU A . n A 1 103 ASP 103 103 103 ASP ASP A . n A 1 104 GLY 104 104 104 GLY GLY A . n A 1 105 LYS 105 105 105 LYS LYS A . n A 1 106 THR 106 106 106 THR THR A . n A 1 107 ALA 107 107 107 ALA ALA A . n A 1 108 LYS 108 108 108 LYS LYS A . n A 1 109 MET 109 109 109 MET MET A . n A 1 110 TYR 110 110 110 TYR TYR A . n A 1 111 ARG 111 111 111 ARG ARG A . n A 1 112 GLY 112 112 112 GLY GLY A . n A 1 113 GLY 113 113 113 GLY GLY A . n A 1 114 LYS 114 114 114 LYS LYS A . n A 1 115 ILE 115 115 115 ILE ILE A . n A 1 116 CYS 116 116 116 CYS CYS A . n A 1 117 LEU 117 117 117 LEU LEU A . n A 1 118 THR 118 118 118 THR THR A . n A 1 119 ASP 119 119 119 ASP ASP A . n A 1 120 HIS 120 120 120 HIS HIS A . n A 1 121 PHE 121 121 121 PHE PHE A . n A 1 122 LYS 122 122 122 LYS LYS A . n A 1 123 PRO 123 123 123 PRO PRO A . n A 1 124 LEU 124 124 124 LEU LEU A . n A 1 125 TRP 125 125 125 TRP TRP A . n A 1 126 ALA 126 126 126 ALA ALA A . n A 1 127 ARG 127 127 127 ARG ARG A . n A 1 128 ASN 128 128 128 ASN ASN A . n A 1 129 VAL 129 129 129 VAL VAL A . n A 1 130 PRO 130 130 130 PRO PRO A . n A 1 131 LYS 131 131 131 LYS LYS A . n A 1 132 PHE 132 132 132 PHE PHE A . n A 1 133 GLY 133 133 133 GLY GLY A . n A 1 134 LEU 134 134 134 LEU LEU A . n A 1 135 ALA 135 135 135 ALA ALA A . n A 1 136 HIS 136 136 136 HIS HIS A . n A 1 137 LEU 137 137 137 LEU LEU A . n A 1 138 MET 138 138 138 MET MET A . n A 1 139 ALA 139 139 139 ALA ALA A . n A 1 140 LEU 140 140 140 LEU LEU A . n A 1 141 GLY 141 141 141 GLY GLY A . n A 1 142 LEU 142 142 142 LEU LEU A . n A 1 143 GLY 143 143 143 GLY GLY A . n A 1 144 PRO 144 144 144 PRO PRO A . n A 1 145 TRP 145 145 145 TRP TRP A . n A 1 146 LEU 146 146 146 LEU LEU A . n A 1 147 ALA 147 147 147 ALA ALA A . n A 1 148 VAL 148 148 148 VAL VAL A . n A 1 149 GLU 149 149 149 GLU GLU A . n A 1 150 ILE 150 150 150 ILE ILE A . n A 1 151 PRO 151 151 151 PRO PRO A . n A 1 152 ASP 152 152 152 ASP ASP A . n A 1 153 LEU 153 153 153 LEU LEU A . n A 1 154 ILE 154 154 154 ILE ILE A . n A 1 155 GLN 155 155 155 GLN GLN A . n A 1 156 LYS 156 156 156 LYS LYS A . n A 1 157 GLY 157 157 157 GLY GLY A . n A 1 158 VAL 158 158 158 VAL VAL A . n A 1 159 ILE 159 159 159 ILE ILE A . n A 1 160 GLN 160 160 160 GLN GLN A . n A 1 161 HIS 161 161 161 HIS HIS A . n A 1 162 LYS 162 162 162 LYS LYS A . n A 1 163 GLU 163 163 163 GLU GLU A . n A 1 164 LYS 164 164 164 LYS LYS A . n A 1 165 CYS 165 165 165 CYS CYS A . n A 1 166 ASN 166 166 166 ASN ASN A . n A 1 167 GLN 167 167 167 GLN GLN A . n B 2 1 GLY 1 379 379 GLY GLY B . n B 2 2 MET 2 380 380 MET MET B . n B 2 3 SER 3 381 381 SER SER B . n B 2 4 VAL 4 382 382 VAL VAL B . n B 2 5 THR 5 383 383 THR THR B . n B 2 6 GLU 6 384 384 GLU GLU B . n B 2 7 LEU 7 385 385 LEU LEU B . n B 2 8 THR 8 386 386 THR THR B . n B 2 9 VAL 9 387 387 VAL VAL B . n B 2 10 GLU 10 388 388 GLU GLU B . n B 2 11 ASP 11 389 389 ASP ASP B . n B 2 12 SER 12 390 390 SER SER B . n B 2 13 GLY 13 391 391 GLY GLY B . n B 2 14 GLU 14 392 392 GLU GLU B . n B 2 15 SER 15 393 393 SER SER B . n B 2 16 LEU 16 394 394 LEU LEU B . n B 2 17 GLU 17 395 395 GLU GLU B . n B 2 18 ASP 18 396 396 ASP ASP B . n B 2 19 LEU 19 397 397 LEU LEU B . n B 2 20 MET 20 398 398 MET MET B . n B 2 21 ALA 21 399 399 ALA ALA B . n B 2 22 LYS 22 400 400 LYS LYS B . n B 2 23 MET 23 401 401 MET MET B . n B 2 24 LYS 24 402 402 LYS LYS B . n B 2 25 ASN 25 403 403 ASN ASN B . n B 2 26 MET 26 404 404 MET MET B . n B 2 27 TRP 27 405 405 TRP TRP B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2100 ? 1 MORE -19 ? 1 'SSA (A^2)' 11850 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-08-04 2 'Structure model' 1 1 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' database_2 2 2 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_database_status.status_code_nmr_data' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'Ubiquitin-fold modifier-conjugating enzyme 1' 1.0 ? mM '[U-100% 13C; U-100% 15N]' 1 'Ubiquitin-like modifier-activating enzyme 5' 1.0 ? mM 'natural abundance' 1 TRIS 50 ? mM 'natural abundance' 1 'sodium chloride' 100 ? mM 'natural abundance' 1 TCEP 2 ? mM 'natural abundance' 1 'AEBSF protease inhibitor' 5 ? mM 'natural abundance' 1 DSS 0.15 ? mM 'natural abundance' 2 'Ubiquitin-fold modifier-conjugating enzyme 1' 1.2 ? mM 'natural abundance' 2 'Ubiquitin-like modifier-activating enzyme 5' 0.3 ? mM '[U-100% 13C; U-100% 15N]' 2 TRIS 50 ? mM 'natural abundance' 2 'sodium chloride' 100 ? mM 'natural abundance' 2 TCEP 2 ? mM 'natural abundance' 2 'AEBSF protease inhibitor' 5 ? mM 'natural abundance' 2 DSS 0.15 ? mM 'natural abundance' # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 6 _pdbx_validate_close_contact.auth_atom_id_1 OE2 _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 GLU _pdbx_validate_close_contact.auth_seq_id_1 388 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 HG _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 SER _pdbx_validate_close_contact.auth_seq_id_2 390 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.59 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 5 CD A ARG 31 ? ? NE A ARG 31 ? ? CZ A ARG 31 ? ? 132.55 123.60 8.95 1.40 N 2 13 CD A ARG 64 ? ? NE A ARG 64 ? ? CZ A ARG 64 ? ? 132.64 123.60 9.04 1.40 N 3 13 NE A ARG 64 ? ? CZ A ARG 64 ? ? NH1 A ARG 64 ? ? 124.79 120.30 4.49 0.50 N 4 13 NE A ARG 64 ? ? CZ A ARG 64 ? ? NH2 A ARG 64 ? ? 116.40 120.30 -3.90 0.50 N 5 16 NE A ARG 31 ? ? CZ A ARG 31 ? ? NH1 A ARG 31 ? ? 123.34 120.30 3.04 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 17 ? ? -141.64 -54.12 2 1 ALA A 20 ? ? -58.58 170.14 3 1 TRP A 53 ? ? -140.40 -22.51 4 1 ALA A 94 ? ? -47.80 157.75 5 1 ASP A 119 ? ? -28.54 -68.81 6 1 ASN A 166 ? ? -125.78 -100.26 7 1 VAL B 387 ? ? -44.95 150.88 8 1 GLU B 388 ? ? -75.89 34.65 9 2 LYS A 17 ? ? -137.80 -31.38 10 2 LYS A 108 ? ? -57.76 101.38 11 2 VAL A 129 ? ? -143.86 52.35 12 2 ASP B 389 ? ? -68.54 83.57 13 3 LYS A 17 ? ? -135.82 -53.94 14 3 TRP A 53 ? ? -146.58 -27.06 15 3 ARG A 111 ? ? -69.92 94.00 16 3 VAL A 129 ? ? -142.98 57.67 17 3 VAL B 382 ? ? -132.96 -78.08 18 3 GLU B 388 ? ? -78.91 36.72 19 3 ASP B 389 ? ? -62.93 87.12 20 3 SER B 390 ? ? -116.98 51.43 21 4 LYS A 17 ? ? -133.24 -53.42 22 4 TRP A 53 ? ? -145.69 -31.23 23 4 ASP A 103 ? ? -67.52 95.75 24 4 CYS A 116 ? ? -68.35 94.24 25 4 VAL A 129 ? ? -145.98 55.68 26 4 LYS A 131 ? ? -140.15 11.15 27 4 ASN A 166 ? ? -120.26 -63.96 28 4 VAL B 382 ? ? -123.85 -55.73 29 4 THR B 383 ? ? -147.97 -62.27 30 5 LYS A 17 ? ? -133.90 -60.90 31 5 TRP A 53 ? ? -156.89 -26.78 32 5 ALA A 94 ? ? -48.20 154.49 33 5 ASP A 119 ? ? -27.69 -70.62 34 5 PHE A 132 ? ? -39.76 136.45 35 5 ASN A 166 ? ? -125.49 -87.95 36 5 GLU B 388 ? ? -78.77 39.54 37 5 ASP B 389 ? ? -66.45 84.81 38 6 LYS A 17 ? ? -130.08 -66.00 39 6 ASP A 52 ? ? -60.95 94.57 40 6 ALA A 94 ? ? -49.19 153.91 41 6 LEU A 117 ? ? -45.84 159.20 42 6 VAL A 129 ? ? -147.74 53.83 43 6 LYS A 164 ? ? -68.09 5.33 44 6 ASN A 166 ? ? -125.39 -50.03 45 6 GLU B 388 ? ? -74.55 34.43 46 6 ASP B 389 ? ? -66.09 91.41 47 6 SER B 390 ? ? -109.06 48.50 48 7 LYS A 17 ? ? -141.58 -48.67 49 7 ARG A 25 ? ? -55.10 -70.72 50 7 ALA A 94 ? ? -48.51 155.80 51 7 PRO A 95 ? ? -68.38 -171.16 52 7 LEU A 117 ? ? -43.89 155.83 53 7 ASP A 119 ? ? -28.99 -67.90 54 7 VAL A 129 ? ? -151.68 54.87 55 7 GLU A 163 ? ? -54.78 -70.21 56 7 VAL B 382 ? ? -107.97 -64.55 57 7 THR B 383 ? ? -146.86 -16.09 58 7 LEU B 385 ? ? -59.44 170.61 59 7 GLU B 388 ? ? -82.42 34.63 60 7 ASP B 389 ? ? -63.58 87.97 61 8 LYS A 17 ? ? -139.30 -54.35 62 8 TRP A 53 ? ? -146.18 -23.66 63 8 TYR A 90 ? ? 39.79 66.67 64 8 ASP A 103 ? ? -61.40 96.00 65 8 VAL A 129 ? ? -156.69 57.92 66 8 VAL B 387 ? ? -47.36 151.85 67 8 GLU B 388 ? ? -78.60 46.42 68 8 SER B 390 ? ? -116.85 50.10 69 9 LYS A 17 ? ? -141.36 -36.12 70 9 ALA A 94 ? ? -49.82 152.26 71 9 ASP A 103 ? ? -65.21 96.13 72 9 ASP A 119 ? ? -25.84 -68.71 73 9 LYS A 131 ? ? -140.36 11.93 74 9 ASN A 166 ? ? -97.16 -68.49 75 9 MET B 380 ? ? -161.55 -168.61 76 9 VAL B 382 ? ? -133.17 -42.26 77 9 LEU B 385 ? ? -64.60 -177.21 78 10 LYS A 17 ? ? -141.62 -43.43 79 10 TRP A 53 ? ? -142.17 -20.46 80 10 LEU A 75 ? ? 66.74 -0.69 81 10 ILE A 115 ? ? -135.26 -47.25 82 10 CYS A 116 ? ? -46.86 95.49 83 10 LEU A 117 ? ? -47.65 152.35 84 10 VAL A 129 ? ? -146.64 58.03 85 10 VAL B 387 ? ? -47.17 159.74 86 11 LYS A 17 ? ? -132.43 -65.07 87 11 ALA A 20 ? ? -61.18 -179.86 88 11 ARG A 25 ? ? -39.54 -71.76 89 11 TRP A 53 ? ? -147.28 -23.37 90 11 ALA A 94 ? ? -49.51 155.43 91 11 ARG A 111 ? ? -62.55 93.81 92 11 LYS A 131 ? ? -140.34 11.10 93 11 ASN A 166 ? ? -124.88 -85.33 94 11 VAL B 382 ? ? -132.60 -46.13 95 11 GLU B 388 ? ? -77.55 39.14 96 11 ASP B 389 ? ? -58.67 91.76 97 11 MET B 404 ? ? -69.95 4.01 98 12 LYS A 17 ? ? -127.76 -54.62 99 12 CYS A 116 ? ? -69.70 94.30 100 12 VAL A 129 ? ? -148.60 52.54 101 12 GLU A 163 ? ? -52.97 -72.08 102 12 ASN A 166 ? ? -127.24 -52.69 103 12 SER B 390 ? ? -107.48 51.05 104 13 LYS A 17 ? ? -130.20 -58.38 105 13 ALA A 20 ? ? -56.85 172.70 106 13 ASP A 119 ? ? -24.10 -67.85 107 13 LYS A 131 ? ? -140.60 11.12 108 13 CYS A 165 ? ? -108.38 -67.52 109 13 ASN A 166 ? ? -126.06 -78.05 110 13 VAL B 382 ? ? -132.03 -31.33 111 13 GLU B 388 ? ? -76.92 49.59 112 13 SER B 390 ? ? -116.16 58.26 113 14 ASP A 103 ? ? -56.54 108.03 114 14 VAL A 129 ? ? -144.33 55.64 115 14 MET B 380 ? ? 59.60 -173.39 116 14 VAL B 387 ? ? -48.45 154.04 117 14 GLU B 388 ? ? -77.32 35.61 118 14 ASP B 389 ? ? -56.38 105.42 119 15 LYS A 17 ? ? -144.17 -30.92 120 15 ARG A 25 ? ? -41.64 -77.33 121 15 ASP A 52 ? ? -57.97 108.52 122 15 CYS A 116 ? ? -67.50 93.98 123 15 VAL A 129 ? ? -144.22 59.16 124 16 LYS A 17 ? ? -121.42 -65.20 125 16 ALA A 94 ? ? -48.17 152.99 126 16 PRO A 95 ? ? -69.26 -175.78 127 16 ASP A 103 ? ? -62.81 96.16 128 16 ASP A 119 ? ? -25.77 -59.40 129 16 VAL A 129 ? ? -141.14 56.60 130 16 ASN A 166 ? ? -119.29 -101.33 131 16 MET B 380 ? ? 58.45 148.58 132 17 LYS A 17 ? ? -137.62 -50.95 133 17 TRP A 53 ? ? -150.53 -25.35 134 17 LEU A 75 ? ? 85.16 4.73 135 17 ALA A 94 ? ? -49.71 155.53 136 17 ASP A 103 ? ? -65.43 96.73 137 17 ASP A 119 ? ? -35.94 -71.04 138 17 THR B 383 ? ? -148.57 -27.80 139 17 GLU B 388 ? ? -75.78 34.07 140 17 ASP B 389 ? ? -53.06 95.93 141 18 LYS A 17 ? ? -128.07 -65.11 142 18 TRP A 53 ? ? -142.84 -24.79 143 18 LYS A 108 ? ? -53.14 109.98 144 18 CYS A 116 ? ? -67.25 92.93 145 18 ASP A 119 ? ? -25.97 -75.66 146 18 VAL A 129 ? ? -146.75 50.04 147 18 VAL B 382 ? ? -133.28 -34.88 148 18 ASP B 389 ? ? -69.68 85.16 149 19 LYS A 17 ? ? -136.16 -46.43 150 19 ASP A 103 ? ? -59.80 102.28 151 19 LYS A 108 ? ? -54.75 102.06 152 19 ILE A 115 ? ? -135.26 -31.61 153 19 CYS A 116 ? ? -67.20 93.97 154 19 ASP A 119 ? ? -25.24 -64.78 155 19 VAL A 129 ? ? -147.50 53.55 156 19 VAL B 382 ? ? -133.24 -39.61 157 19 THR B 383 ? ? -137.88 -30.35 158 19 LEU B 385 ? ? -59.65 -177.83 159 19 GLU B 388 ? ? -78.52 37.14 160 19 ASP B 389 ? ? -65.31 84.67 161 19 MET B 404 ? ? -67.71 1.04 162 20 LYS A 17 ? ? -134.24 -63.34 163 20 ASP A 103 ? ? -64.20 96.89 164 20 VAL A 158 ? ? -123.97 -52.80 165 20 MET B 380 ? ? -126.99 -51.67 166 20 THR B 383 ? ? -130.82 -46.91 167 20 LEU B 385 ? ? -66.14 -178.91 168 20 GLU B 388 ? ? -79.38 41.22 169 20 ASP B 389 ? ? -63.39 84.38 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 ARG A 7 ? ? 0.112 'SIDE CHAIN' 2 1 ARG A 31 ? ? 0.091 'SIDE CHAIN' 3 1 ARG A 41 ? ? 0.080 'SIDE CHAIN' 4 1 ARG A 55 ? ? 0.107 'SIDE CHAIN' 5 1 ARG A 111 ? ? 0.077 'SIDE CHAIN' 6 2 ARG A 7 ? ? 0.107 'SIDE CHAIN' 7 3 ARG A 7 ? ? 0.077 'SIDE CHAIN' 8 3 ARG A 8 ? ? 0.083 'SIDE CHAIN' 9 6 ARG A 127 ? ? 0.079 'SIDE CHAIN' 10 7 ARG A 55 ? ? 0.106 'SIDE CHAIN' 11 8 ARG A 41 ? ? 0.104 'SIDE CHAIN' 12 9 ARG A 41 ? ? 0.102 'SIDE CHAIN' 13 11 ARG A 7 ? ? 0.076 'SIDE CHAIN' 14 11 ARG A 55 ? ? 0.083 'SIDE CHAIN' 15 14 TYR A 42 ? ? 0.091 'SIDE CHAIN' 16 15 TYR A 42 ? ? 0.074 'SIDE CHAIN' 17 15 PHE A 66 ? ? 0.075 'SIDE CHAIN' 18 16 ARG A 111 ? ? 0.102 'SIDE CHAIN' 19 17 ARG A 111 ? ? 0.080 'SIDE CHAIN' 20 18 ARG A 7 ? ? 0.092 'SIDE CHAIN' 21 18 ARG A 8 ? ? 0.083 'SIDE CHAIN' 22 18 ARG A 64 ? ? 0.080 'SIDE CHAIN' 23 20 ARG A 7 ? ? 0.094 'SIDE CHAIN' 24 20 ARG A 23 ? ? 0.091 'SIDE CHAIN' # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'German Research Foundation (DFG)' Germany SFB1173 1 'European Union (EU)' 'European Union' 875510 2 'The Structural Genomic Consortium (SGC)' ? ? 3 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #