HEADER UNKNOWN FUNCTION 16-JUN-21 7OW2 TITLE E3 RING LIGASE BINDING DOMAIN WITH PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE TRIM7; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: GLYCOGENIN-INTERACTING PROTEIN,RING FINGER PROTEIN 90, COMPND 5 TRIPARTITE MOTIF-CONTAINING PROTEIN 7; COMPND 6 EC: 2.3.2.27; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE RNF187 PEPTIDE; COMPND 10 CHAIN: E, F, G, H; COMPND 11 EC: 2.3.2.27; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TRIM7, GNIP, RNF90; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: RNF187; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS UBIQUITIN LIGASE, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR L.C.JAMES REVDAT 2 31-JAN-24 7OW2 1 REMARK REVDAT 1 13-JUL-22 7OW2 0 JRNL AUTH L.C.JAMES JRNL TITL E3 LIGASE TARGETING DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 93.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 44910 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2346 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.17 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3305 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.3250 REMARK 3 BIN FREE R VALUE SET COUNT : 154 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5611 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 136 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.41000 REMARK 3 B22 (A**2) : 0.41000 REMARK 3 B33 (A**2) : -1.32000 REMARK 3 B12 (A**2) : 0.20000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.236 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.196 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.175 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.246 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5755 ; 0.007 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5361 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7824 ; 1.397 ; 1.643 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12272 ; 1.246 ; 1.576 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 701 ; 7.758 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 330 ;28.678 ;19.576 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 903 ;11.601 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 63 ;13.349 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 697 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6554 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1460 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7OW2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1292116514. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : OXFORD TITAN CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : ADDREF REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47982 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.170 REMARK 200 RESOLUTION RANGE LOW (A) : 93.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2IWG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23% PEG 6K, 0.1 M NACL, 50MM HEPES PH REMARK 280 6.7, BATCH MODE, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.71400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 91.42800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 68.57100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 114.28500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 22.85700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, E, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D, F, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 0 REMARK 465 VAL B 1 REMARK 465 GLU B 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 2 CG CD OE1 OE2 REMARK 470 LEU B 18 CG CD1 CD2 REMARK 470 GLU C 2 CG CD OE1 OE2 REMARK 470 ARG C 28 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL D 1 N GLU D 2 1.72 REMARK 500 O HOH C 203 O HOH C 220 1.95 REMARK 500 CB SER D 64 O HOH D 307 2.06 REMARK 500 O HOH F 103 O HOH H 103 2.10 REMARK 500 CD ARG C 119 O HOH C 217 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL D 1 C GLU D 2 N -0.222 REMARK 500 GLU D 2 C LEU D 3 N -0.254 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL D 1 CA - C - N ANGL. DEV. = 30.1 DEGREES REMARK 500 VAL D 1 O - C - N ANGL. DEV. = -28.9 DEGREES REMARK 500 GLU D 2 C - N - CA ANGL. DEV. = 46.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 41 -61.39 -125.73 REMARK 500 ASP A 138 26.63 -150.47 REMARK 500 THR B 41 -48.06 -133.79 REMARK 500 SER B 118 -52.75 -121.37 REMARK 500 ASP B 138 13.85 -147.02 REMARK 500 THR C 41 -63.80 -131.75 REMARK 500 ASP C 138 26.49 -143.38 REMARK 500 TYR C 143 146.37 -172.10 REMARK 500 GLU D 2 92.27 -48.97 REMARK 500 THR D 41 -54.46 -135.42 REMARK 500 SER D 113 69.64 -100.03 REMARK 500 ASP D 138 35.59 -144.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL D 1 GLU D 2 141.38 REMARK 500 REMARK 500 REMARK: NULL DBREF 7OW2 A 1 170 UNP Q9C029 TRIM7_HUMAN 342 511 DBREF 7OW2 B 1 170 UNP Q9C029 TRIM7_HUMAN 342 511 DBREF 7OW2 C 1 170 UNP Q9C029 TRIM7_HUMAN 342 511 DBREF 7OW2 D 1 170 UNP Q9C029 TRIM7_HUMAN 342 511 DBREF 7OW2 E 19 25 PDB 7OW2 7OW2 19 25 DBREF 7OW2 F 19 25 PDB 7OW2 7OW2 19 25 DBREF 7OW2 G 19 25 PDB 7OW2 7OW2 19 25 DBREF 7OW2 H 19 25 PDB 7OW2 7OW2 19 25 SEQADV 7OW2 MET A 0 UNP Q9C029 INITIATING METHIONINE SEQADV 7OW2 MET B 0 UNP Q9C029 INITIATING METHIONINE SEQADV 7OW2 MET C 0 UNP Q9C029 INITIATING METHIONINE SEQADV 7OW2 MET D 0 UNP Q9C029 INITIATING METHIONINE SEQRES 1 A 171 MET VAL GLU LEU THR LEU ASP PRO ASP THR ALA ASN PRO SEQRES 2 A 171 ARG LEU ILE LEU SER LEU ASP LEU LYS GLY VAL ARG LEU SEQRES 3 A 171 GLY GLU ARG ALA GLN ASP LEU PRO ASN HIS PRO CYS ARG SEQRES 4 A 171 PHE ASP THR ASN THR ARG VAL LEU ALA SER CYS GLY PHE SEQRES 5 A 171 SER SER GLY ARG HIS HIS TRP GLU VAL GLU VAL GLY SER SEQRES 6 A 171 LYS ASP GLY TRP ALA PHE GLY VAL ALA ARG GLU SER VAL SEQRES 7 A 171 ARG ARG LYS GLY LEU THR PRO PHE THR PRO GLU GLU GLY SEQRES 8 A 171 VAL TRP ALA LEU GLN LEU ASN GLY GLY GLN TYR TRP ALA SEQRES 9 A 171 VAL THR SER PRO GLU ARG SER PRO LEU SER CYS GLY HIS SEQRES 10 A 171 LEU SER ARG VAL ARG VAL ALA LEU ASP LEU GLU VAL GLY SEQRES 11 A 171 ALA VAL SER PHE TYR ALA VAL GLU ASP MET ARG HIS LEU SEQRES 12 A 171 TYR THR PHE ARG VAL ASN PHE GLN GLU ARG VAL PHE PRO SEQRES 13 A 171 LEU PHE SER VAL CYS SER THR GLY THR TYR LEU ARG ILE SEQRES 14 A 171 TRP PRO SEQRES 1 B 171 MET VAL GLU LEU THR LEU ASP PRO ASP THR ALA ASN PRO SEQRES 2 B 171 ARG LEU ILE LEU SER LEU ASP LEU LYS GLY VAL ARG LEU SEQRES 3 B 171 GLY GLU ARG ALA GLN ASP LEU PRO ASN HIS PRO CYS ARG SEQRES 4 B 171 PHE ASP THR ASN THR ARG VAL LEU ALA SER CYS GLY PHE SEQRES 5 B 171 SER SER GLY ARG HIS HIS TRP GLU VAL GLU VAL GLY SER SEQRES 6 B 171 LYS ASP GLY TRP ALA PHE GLY VAL ALA ARG GLU SER VAL SEQRES 7 B 171 ARG ARG LYS GLY LEU THR PRO PHE THR PRO GLU GLU GLY SEQRES 8 B 171 VAL TRP ALA LEU GLN LEU ASN GLY GLY GLN TYR TRP ALA SEQRES 9 B 171 VAL THR SER PRO GLU ARG SER PRO LEU SER CYS GLY HIS SEQRES 10 B 171 LEU SER ARG VAL ARG VAL ALA LEU ASP LEU GLU VAL GLY SEQRES 11 B 171 ALA VAL SER PHE TYR ALA VAL GLU ASP MET ARG HIS LEU SEQRES 12 B 171 TYR THR PHE ARG VAL ASN PHE GLN GLU ARG VAL PHE PRO SEQRES 13 B 171 LEU PHE SER VAL CYS SER THR GLY THR TYR LEU ARG ILE SEQRES 14 B 171 TRP PRO SEQRES 1 C 171 MET VAL GLU LEU THR LEU ASP PRO ASP THR ALA ASN PRO SEQRES 2 C 171 ARG LEU ILE LEU SER LEU ASP LEU LYS GLY VAL ARG LEU SEQRES 3 C 171 GLY GLU ARG ALA GLN ASP LEU PRO ASN HIS PRO CYS ARG SEQRES 4 C 171 PHE ASP THR ASN THR ARG VAL LEU ALA SER CYS GLY PHE SEQRES 5 C 171 SER SER GLY ARG HIS HIS TRP GLU VAL GLU VAL GLY SER SEQRES 6 C 171 LYS ASP GLY TRP ALA PHE GLY VAL ALA ARG GLU SER VAL SEQRES 7 C 171 ARG ARG LYS GLY LEU THR PRO PHE THR PRO GLU GLU GLY SEQRES 8 C 171 VAL TRP ALA LEU GLN LEU ASN GLY GLY GLN TYR TRP ALA SEQRES 9 C 171 VAL THR SER PRO GLU ARG SER PRO LEU SER CYS GLY HIS SEQRES 10 C 171 LEU SER ARG VAL ARG VAL ALA LEU ASP LEU GLU VAL GLY SEQRES 11 C 171 ALA VAL SER PHE TYR ALA VAL GLU ASP MET ARG HIS LEU SEQRES 12 C 171 TYR THR PHE ARG VAL ASN PHE GLN GLU ARG VAL PHE PRO SEQRES 13 C 171 LEU PHE SER VAL CYS SER THR GLY THR TYR LEU ARG ILE SEQRES 14 C 171 TRP PRO SEQRES 1 D 171 MET VAL GLU LEU THR LEU ASP PRO ASP THR ALA ASN PRO SEQRES 2 D 171 ARG LEU ILE LEU SER LEU ASP LEU LYS GLY VAL ARG LEU SEQRES 3 D 171 GLY GLU ARG ALA GLN ASP LEU PRO ASN HIS PRO CYS ARG SEQRES 4 D 171 PHE ASP THR ASN THR ARG VAL LEU ALA SER CYS GLY PHE SEQRES 5 D 171 SER SER GLY ARG HIS HIS TRP GLU VAL GLU VAL GLY SER SEQRES 6 D 171 LYS ASP GLY TRP ALA PHE GLY VAL ALA ARG GLU SER VAL SEQRES 7 D 171 ARG ARG LYS GLY LEU THR PRO PHE THR PRO GLU GLU GLY SEQRES 8 D 171 VAL TRP ALA LEU GLN LEU ASN GLY GLY GLN TYR TRP ALA SEQRES 9 D 171 VAL THR SER PRO GLU ARG SER PRO LEU SER CYS GLY HIS SEQRES 10 D 171 LEU SER ARG VAL ARG VAL ALA LEU ASP LEU GLU VAL GLY SEQRES 11 D 171 ALA VAL SER PHE TYR ALA VAL GLU ASP MET ARG HIS LEU SEQRES 12 D 171 TYR THR PHE ARG VAL ASN PHE GLN GLU ARG VAL PHE PRO SEQRES 13 D 171 LEU PHE SER VAL CYS SER THR GLY THR TYR LEU ARG ILE SEQRES 14 D 171 TRP PRO SEQRES 1 E 7 GLY LEU SER MET LEU LEU GLN SEQRES 1 F 7 GLY LEU SER MET LEU LEU GLN SEQRES 1 G 7 GLY LEU SER MET LEU LEU GLN SEQRES 1 H 7 GLY LEU SER MET LEU LEU GLN HET CL A 201 1 HET PO4 D 201 5 HET CL D 202 1 HETNAM CL CHLORIDE ION HETNAM PO4 PHOSPHATE ION FORMUL 9 CL 2(CL 1-) FORMUL 10 PO4 O4 P 3- FORMUL 12 HOH *136(H2 O) HELIX 1 AA1 THR A 86 GLU A 89 5 4 HELIX 2 AA2 GLU D 137 MET D 139 5 3 HELIX 3 AA3 GLY E 19 GLN E 25 5 7 HELIX 4 AA4 GLY F 19 GLN F 25 5 7 HELIX 5 AA5 GLY G 19 GLN G 25 5 7 HELIX 6 AA6 GLY H 19 GLN H 25 5 7 SHEET 1 AA1 7 LEU A 14 LEU A 16 0 SHEET 2 AA1 7 GLY A 22 LEU A 25 -1 O ARG A 24 N ILE A 15 SHEET 3 AA1 7 LEU A 166 TRP A 169 -1 O LEU A 166 N VAL A 23 SHEET 4 AA1 7 ARG A 55 VAL A 62 -1 N GLU A 61 O ARG A 167 SHEET 5 AA1 7 ARG A 119 ASP A 125 -1 O LEU A 124 N HIS A 56 SHEET 6 AA1 7 ALA A 130 ALA A 135 -1 O TYR A 134 N ARG A 121 SHEET 7 AA1 7 ARG A 140 ARG A 146 -1 O LEU A 142 N PHE A 133 SHEET 1 AA2 6 ARG A 44 LEU A 46 0 SHEET 2 AA2 6 VAL A 153 VAL A 159 -1 O PHE A 157 N VAL A 45 SHEET 3 AA2 6 TRP A 68 ARG A 74 -1 N ALA A 73 O PHE A 154 SHEET 4 AA2 6 VAL A 91 ASN A 97 -1 O TRP A 92 N VAL A 72 SHEET 5 AA2 6 GLN A 100 ALA A 103 -1 O TRP A 102 N GLN A 95 SHEET 6 AA2 6 SER A 110 PRO A 111 -1 O SER A 110 N ALA A 103 SHEET 1 AA3 7 LEU B 14 LEU B 16 0 SHEET 2 AA3 7 GLY B 22 LEU B 25 -1 O ARG B 24 N ILE B 15 SHEET 3 AA3 7 LEU B 166 TRP B 169 -1 O LEU B 166 N VAL B 23 SHEET 4 AA3 7 ARG B 55 VAL B 62 -1 N GLU B 61 O ARG B 167 SHEET 5 AA3 7 ARG B 119 ASP B 125 -1 O VAL B 122 N TRP B 58 SHEET 6 AA3 7 ALA B 130 ALA B 135 -1 O ALA B 130 N ASP B 125 SHEET 7 AA3 7 HIS B 141 ARG B 146 -1 O LEU B 142 N PHE B 133 SHEET 1 AA4 6 ARG B 44 LEU B 46 0 SHEET 2 AA4 6 VAL B 153 VAL B 159 -1 O PHE B 157 N VAL B 45 SHEET 3 AA4 6 TRP B 68 ARG B 74 -1 N ALA B 73 O PHE B 154 SHEET 4 AA4 6 VAL B 91 ASN B 97 -1 O LEU B 94 N PHE B 70 SHEET 5 AA4 6 GLN B 100 ALA B 103 -1 O TRP B 102 N GLN B 95 SHEET 6 AA4 6 SER B 110 PRO B 111 -1 O SER B 110 N ALA B 103 SHEET 1 AA5 7 LEU C 14 LEU C 16 0 SHEET 2 AA5 7 GLY C 22 LEU C 25 -1 O ARG C 24 N ILE C 15 SHEET 3 AA5 7 LEU C 166 TRP C 169 -1 O LEU C 166 N VAL C 23 SHEET 4 AA5 7 ARG C 55 VAL C 62 -1 N GLU C 61 O ARG C 167 SHEET 5 AA5 7 ARG C 119 ASP C 125 -1 O LEU C 124 N HIS C 56 SHEET 6 AA5 7 ALA C 130 ALA C 135 -1 O ALA C 130 N ASP C 125 SHEET 7 AA5 7 ARG C 140 ARG C 146 -1 O PHE C 145 N VAL C 131 SHEET 1 AA6 6 ARG C 44 LEU C 46 0 SHEET 2 AA6 6 VAL C 153 VAL C 159 -1 O PHE C 157 N VAL C 45 SHEET 3 AA6 6 TRP C 68 ARG C 74 -1 N ALA C 73 O PHE C 154 SHEET 4 AA6 6 VAL C 91 ASN C 97 -1 O TRP C 92 N VAL C 72 SHEET 5 AA6 6 GLN C 100 ALA C 103 -1 O TRP C 102 N GLN C 95 SHEET 6 AA6 6 SER C 110 PRO C 111 -1 O SER C 110 N ALA C 103 SHEET 1 AA7 7 LEU D 14 LEU D 16 0 SHEET 2 AA7 7 GLY D 22 LEU D 25 -1 O ARG D 24 N ILE D 15 SHEET 3 AA7 7 LEU D 166 TRP D 169 -1 O LEU D 166 N VAL D 23 SHEET 4 AA7 7 ARG D 55 VAL D 62 -1 N GLU D 61 O ARG D 167 SHEET 5 AA7 7 ARG D 119 ASP D 125 -1 O LEU D 124 N HIS D 56 SHEET 6 AA7 7 ALA D 130 ALA D 135 -1 O TYR D 134 N ARG D 121 SHEET 7 AA7 7 ARG D 140 ARG D 146 -1 O LEU D 142 N PHE D 133 SHEET 1 AA8 6 ARG D 44 LEU D 46 0 SHEET 2 AA8 6 VAL D 153 VAL D 159 -1 O PHE D 157 N VAL D 45 SHEET 3 AA8 6 TRP D 68 ARG D 74 -1 N ALA D 73 O PHE D 154 SHEET 4 AA8 6 VAL D 91 ASN D 97 -1 O TRP D 92 N VAL D 72 SHEET 5 AA8 6 GLN D 100 ALA D 103 -1 O TRP D 102 N GLN D 95 SHEET 6 AA8 6 SER D 110 PRO D 111 -1 O SER D 110 N ALA D 103 CISPEP 1 SER A 106 PRO A 107 0 1.80 CISPEP 2 TRP A 169 PRO A 170 0 -4.86 CISPEP 3 SER B 106 PRO B 107 0 1.37 CISPEP 4 TRP B 169 PRO B 170 0 -0.24 CISPEP 5 SER C 106 PRO C 107 0 5.08 CISPEP 6 TRP C 169 PRO C 170 0 5.89 CISPEP 7 SER D 106 PRO D 107 0 0.41 CISPEP 8 TRP D 169 PRO D 170 0 -7.79 CRYST1 108.119 108.119 137.142 90.00 90.00 120.00 P 61 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009249 0.005340 0.000000 0.00000 SCALE2 0.000000 0.010680 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007292 0.00000