data_7OWX # _entry.id 7OWX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7OWX pdb_00007owx 10.2210/pdb7owx/pdb WWPDB D_1292116549 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7OWX _pdbx_database_status.recvd_initial_deposition_date 2021-06-21 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category CAPRI _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Zivic, Z.' 1 ? 'Hadzi, S.' 2 0000-0002-5615-7918 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Faseb J.' _citation.journal_id_ASTM FAJOEC _citation.journal_id_CSD 2074 _citation.journal_id_ISSN 1530-6860 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 36 _citation.language ? _citation.page_first e22199 _citation.page_last e22199 _citation.title 'Structural polymorphism of coiled-coils from the stalk domain of SARS-CoV-2 spike protein.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1096/fj.202101670R _citation.pdbx_database_id_PubMed 35157347 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zivic, Z.' 1 0000-0001-9044-3064 primary 'Strmsek, Z.' 2 ? primary 'Novinec, M.' 3 ? primary 'Lah, J.' 4 ? primary 'Hadzi, S.' 5 0000-0002-5615-7918 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 7OWX _cell.details ? _cell.formula_units_Z ? _cell.length_a 45.140 _cell.length_a_esd ? _cell.length_b 45.540 _cell.length_b_esd ? _cell.length_c 47.900 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 16 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OWX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Spike protein S2' 3218.591 4 ? ? ? ? 2 non-polymer syn 1,2-ETHANEDIOL 62.068 3 ? ? ? ? 3 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? 4 water nat water 18.015 76 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code YNIQKEIDRLNEVAKNLNESLIDLQEL _entity_poly.pdbx_seq_one_letter_code_can YNIQKEIDRLNEVAKNLNESLIDLQEL _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 TYR n 1 2 ASN n 1 3 ILE n 1 4 GLN n 1 5 LYS n 1 6 GLU n 1 7 ILE n 1 8 ASP n 1 9 ARG n 1 10 LEU n 1 11 ASN n 1 12 GLU n 1 13 VAL n 1 14 ALA n 1 15 LYS n 1 16 ASN n 1 17 LEU n 1 18 ASN n 1 19 GLU n 1 20 SER n 1 21 LEU n 1 22 ILE n 1 23 ASP n 1 24 LEU n 1 25 GLN n 1 26 GLU n 1 27 LEU n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 27 _pdbx_entity_src_syn.organism_scientific 'Severe acute respiratory syndrome coronavirus 2' _pdbx_entity_src_syn.organism_common_name '2019-nCoV, SARS-CoV-2' _pdbx_entity_src_syn.ncbi_taxonomy_id 2697049 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SPIKE_SARS2 _struct_ref.pdbx_db_accession P0DTC2 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code VNIQKEIDRLNEVAKNLNESLIDLQEL _struct_ref.pdbx_align_begin 1177 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7OWX A 1 ? 27 ? P0DTC2 1177 ? 1203 ? 1177 1203 2 1 7OWX B 1 ? 27 ? P0DTC2 1177 ? 1203 ? 1177 1203 3 1 7OWX C 1 ? 27 ? P0DTC2 1177 ? 1203 ? 1177 1203 4 1 7OWX D 1 ? 27 ? P0DTC2 1177 ? 1203 ? 1177 1203 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 7OWX TYR A 1 ? UNP P0DTC2 VAL 1177 'engineered mutation' 1177 1 2 7OWX TYR B 1 ? UNP P0DTC2 VAL 1177 'engineered mutation' 1177 2 3 7OWX TYR C 1 ? UNP P0DTC2 VAL 1177 'engineered mutation' 1177 3 4 7OWX TYR D 1 ? UNP P0DTC2 VAL 1177 'engineered mutation' 1177 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7OWX _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.92 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 35.78 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.002 M zinc chloride, 0.1 M Tris pH 8, 20 % w/v PEG 6000' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2021-03-27 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.978565 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SOLEIL BEAMLINE PROXIMA 1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.978565 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 'PROXIMA 1' _diffrn_source.pdbx_synchrotron_site SOLEIL # _reflns.B_iso_Wilson_estimate 26.970 _reflns.entry_id 7OWX _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.9290 _reflns.d_resolution_low 32.85 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 7780 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.3 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 10.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 11.5 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.15 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.998 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.9290 _reflns_shell.d_res_low 2.0495 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 729 _reflns_shell.percent_possible_all 93.5 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 18.1 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 1.43 _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.68 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 87.640 _refine.B_iso_mean 37.6203 _refine.B_iso_min 19.730 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7OWX _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.9290 _refine.ls_d_res_low 32.85 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 7779 _refine.ls_number_reflns_R_free 777 _refine.ls_number_reflns_R_work 7004 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.3 _refine.ls_percent_reflns_R_free 9.9900 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1779 _refine.ls_R_factor_R_free 0.2329 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1718 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.360 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'AB INITIO PHASING' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 25.1500 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.2200 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 1.9290 _refine_hist.d_res_low 32.85 _refine_hist.number_atoms_solvent 76 _refine_hist.number_atoms_total 970 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 108 _refine_hist.pdbx_B_iso_mean_ligand 41.94 _refine_hist.pdbx_B_iso_mean_solvent 46.11 _refine_hist.pdbx_number_atoms_protein 880 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 14 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.006 ? 923 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.730 ? 1238 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.041 ? 148 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.004 ? 167 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 7.623 ? 704 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.929 2.0495 . . 124 728 95.0000 . . . 0.3459 0.0000 0.2473 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.0495 2.2077 . . 128 1151 100.0000 . . . 0.2767 0.0000 0.1964 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.2077 2.4298 . . 135 1151 100.0000 . . . 0.2450 0.0000 0.1665 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.4298 2.7813 . . 124 1172 100.0000 . . . 0.2232 0.0000 0.1604 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.7813 3.5035 . . 136 1188 100.0000 . . . 0.2164 0.0000 0.1659 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.5035 33.0040 . . 130 1252 100.0000 . . . 0.2208 0.0000 0.1668 . . . . . . . . . . . # _struct.entry_id 7OWX _struct.title 'Structure of coiled-coil tetramer from SARS-CoV-2 spike stalk region' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7OWX _struct_keywords.text 'spike, sars-cov-2, coiled-coil, tetramer, virus, coronavirus, VIRAL PROTEIN' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 2 ? I N N 3 ? J N N 4 ? K N N 4 ? L N N 4 ? M N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ILE A 3 ? LEU A 27 ? ILE A 1179 LEU A 1203 1 ? 25 HELX_P HELX_P2 AA2 ASN B 2 ? GLU B 26 ? ASN B 1178 GLU B 1202 1 ? 25 HELX_P HELX_P3 AA3 ASN C 2 ? GLU C 26 ? ASN C 1178 GLU C 1202 1 ? 25 HELX_P HELX_P4 AA4 ILE D 3 ? GLN D 25 ? ILE D 1179 GLN D 1201 1 ? 23 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A GLU 19 OE2 ? ? ? 1_555 I ZN . ZN ? ? A GLU 1195 D ZN 1302 4_446 ? ? ? ? ? ? ? 1.914 ? ? metalc2 metalc ? ? A ASP 23 OD1 ? ? ? 1_555 I ZN . ZN ? ? A ASP 1199 D ZN 1302 4_446 ? ? ? ? ? ? ? 2.658 ? ? metalc3 metalc ? ? A ASP 23 OD2 ? ? ? 1_555 I ZN . ZN ? ? A ASP 1199 D ZN 1302 4_446 ? ? ? ? ? ? ? 2.004 ? ? metalc4 metalc ? ? C ASP 8 OD2 ? ? ? 1_555 G ZN . ZN ? ? C ASP 1184 C ZN 1301 1_555 ? ? ? ? ? ? ? 1.947 ? ? metalc5 metalc ? ? C GLU 19 OE1 ? ? ? 1_555 G ZN . ZN ? ? C GLU 1195 C ZN 1301 3_745 ? ? ? ? ? ? ? 2.069 ? ? metalc6 metalc ? ? C ASP 23 OD1 ? ? ? 1_555 G ZN . ZN ? ? C ASP 1199 C ZN 1301 3_745 ? ? ? ? ? ? ? 2.642 ? ? metalc7 metalc ? ? C ASP 23 OD2 ? ? ? 1_555 G ZN . ZN ? ? C ASP 1199 C ZN 1301 3_745 ? ? ? ? ? ? ? 2.097 ? ? metalc8 metalc ? ? G ZN . ZN ? ? ? 1_555 L HOH . O ? ? C ZN 1301 C HOH 1418 3_755 ? ? ? ? ? ? ? 2.026 ? ? metalc9 metalc ? ? D GLU 19 OE1 ? ? ? 1_555 I ZN . ZN ? ? D GLU 1195 D ZN 1302 1_555 ? ? ? ? ? ? ? 1.961 ? ? metalc10 metalc ? ? D ASP 23 OD2 ? ? ? 1_555 I ZN . ZN ? ? D ASP 1199 D ZN 1302 1_555 ? ? ? ? ? ? ? 1.938 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 7OWX _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.022153 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021959 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020877 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 TYR 1 1177 1177 TYR TYR A . n A 1 2 ASN 2 1178 1178 ASN ASN A . n A 1 3 ILE 3 1179 1179 ILE ILE A . n A 1 4 GLN 4 1180 1180 GLN GLN A . n A 1 5 LYS 5 1181 1181 LYS LYS A . n A 1 6 GLU 6 1182 1182 GLU GLU A . n A 1 7 ILE 7 1183 1183 ILE ILE A . n A 1 8 ASP 8 1184 1184 ASP ASP A . n A 1 9 ARG 9 1185 1185 ARG ARG A . n A 1 10 LEU 10 1186 1186 LEU LEU A . n A 1 11 ASN 11 1187 1187 ASN ASN A . n A 1 12 GLU 12 1188 1188 GLU GLU A . n A 1 13 VAL 13 1189 1189 VAL VAL A . n A 1 14 ALA 14 1190 1190 ALA ALA A . n A 1 15 LYS 15 1191 1191 LYS LYS A . n A 1 16 ASN 16 1192 1192 ASN ASN A . n A 1 17 LEU 17 1193 1193 LEU LEU A . n A 1 18 ASN 18 1194 1194 ASN ASN A . n A 1 19 GLU 19 1195 1195 GLU GLU A . n A 1 20 SER 20 1196 1196 SER SER A . n A 1 21 LEU 21 1197 1197 LEU LEU A . n A 1 22 ILE 22 1198 1198 ILE ILE A . n A 1 23 ASP 23 1199 1199 ASP ASP A . n A 1 24 LEU 24 1200 1200 LEU LEU A . n A 1 25 GLN 25 1201 1201 GLN GLN A . n A 1 26 GLU 26 1202 1202 GLU GLU A . n A 1 27 LEU 27 1203 1203 LEU LEU A . n B 1 1 TYR 1 1177 1177 TYR TYR B . n B 1 2 ASN 2 1178 1178 ASN ASN B . n B 1 3 ILE 3 1179 1179 ILE ILE B . n B 1 4 GLN 4 1180 1180 GLN GLN B . n B 1 5 LYS 5 1181 1181 LYS LYS B . n B 1 6 GLU 6 1182 1182 GLU GLU B . n B 1 7 ILE 7 1183 1183 ILE ILE B . n B 1 8 ASP 8 1184 1184 ASP ASP B . n B 1 9 ARG 9 1185 1185 ARG ARG B . n B 1 10 LEU 10 1186 1186 LEU LEU B . n B 1 11 ASN 11 1187 1187 ASN ASN B . n B 1 12 GLU 12 1188 1188 GLU GLU B . n B 1 13 VAL 13 1189 1189 VAL VAL B . n B 1 14 ALA 14 1190 1190 ALA ALA B . n B 1 15 LYS 15 1191 1191 LYS LYS B . n B 1 16 ASN 16 1192 1192 ASN ASN B . n B 1 17 LEU 17 1193 1193 LEU LEU B . n B 1 18 ASN 18 1194 1194 ASN ASN B . n B 1 19 GLU 19 1195 1195 GLU GLU B . n B 1 20 SER 20 1196 1196 SER SER B . n B 1 21 LEU 21 1197 1197 LEU LEU B . n B 1 22 ILE 22 1198 1198 ILE ILE B . n B 1 23 ASP 23 1199 1199 ASP ASP B . n B 1 24 LEU 24 1200 1200 LEU LEU B . n B 1 25 GLN 25 1201 1201 GLN GLN B . n B 1 26 GLU 26 1202 1202 GLU GLU B . n B 1 27 LEU 27 1203 1203 LEU LEU B . n C 1 1 TYR 1 1177 1177 TYR TYR C . n C 1 2 ASN 2 1178 1178 ASN ASN C . n C 1 3 ILE 3 1179 1179 ILE ILE C . n C 1 4 GLN 4 1180 1180 GLN GLN C . n C 1 5 LYS 5 1181 1181 LYS LYS C . n C 1 6 GLU 6 1182 1182 GLU GLU C . n C 1 7 ILE 7 1183 1183 ILE ILE C . n C 1 8 ASP 8 1184 1184 ASP ASP C . n C 1 9 ARG 9 1185 1185 ARG ARG C . n C 1 10 LEU 10 1186 1186 LEU LEU C . n C 1 11 ASN 11 1187 1187 ASN ASN C . n C 1 12 GLU 12 1188 1188 GLU GLU C . n C 1 13 VAL 13 1189 1189 VAL VAL C . n C 1 14 ALA 14 1190 1190 ALA ALA C . n C 1 15 LYS 15 1191 1191 LYS LYS C . n C 1 16 ASN 16 1192 1192 ASN ASN C . n C 1 17 LEU 17 1193 1193 LEU LEU C . n C 1 18 ASN 18 1194 1194 ASN ASN C . n C 1 19 GLU 19 1195 1195 GLU GLU C . n C 1 20 SER 20 1196 1196 SER SER C . n C 1 21 LEU 21 1197 1197 LEU LEU C . n C 1 22 ILE 22 1198 1198 ILE ILE C . n C 1 23 ASP 23 1199 1199 ASP ASP C . n C 1 24 LEU 24 1200 1200 LEU LEU C . n C 1 25 GLN 25 1201 1201 GLN GLN C . n C 1 26 GLU 26 1202 1202 GLU GLU C . n C 1 27 LEU 27 1203 1203 LEU LEU C . n D 1 1 TYR 1 1177 1177 TYR TYR D . n D 1 2 ASN 2 1178 1178 ASN ASN D . n D 1 3 ILE 3 1179 1179 ILE ILE D . n D 1 4 GLN 4 1180 1180 GLN GLN D . n D 1 5 LYS 5 1181 1181 LYS LYS D . n D 1 6 GLU 6 1182 1182 GLU GLU D . n D 1 7 ILE 7 1183 1183 ILE ILE D . n D 1 8 ASP 8 1184 1184 ASP ASP D . n D 1 9 ARG 9 1185 1185 ARG ARG D . n D 1 10 LEU 10 1186 1186 LEU LEU D . n D 1 11 ASN 11 1187 1187 ASN ASN D . n D 1 12 GLU 12 1188 1188 GLU GLU D . n D 1 13 VAL 13 1189 1189 VAL VAL D . n D 1 14 ALA 14 1190 1190 ALA ALA D . n D 1 15 LYS 15 1191 1191 LYS LYS D . n D 1 16 ASN 16 1192 1192 ASN ASN D . n D 1 17 LEU 17 1193 1193 LEU LEU D . n D 1 18 ASN 18 1194 1194 ASN ASN D . n D 1 19 GLU 19 1195 1195 GLU GLU D . n D 1 20 SER 20 1196 1196 SER SER D . n D 1 21 LEU 21 1197 1197 LEU LEU D . n D 1 22 ILE 22 1198 1198 ILE ILE D . n D 1 23 ASP 23 1199 1199 ASP ASP D . n D 1 24 LEU 24 1200 1200 LEU LEU D . n D 1 25 GLN 25 1201 1201 GLN GLN D . n D 1 26 GLU 26 1202 1202 GLU GLU D . n D 1 27 LEU 27 1203 1203 LEU LEU D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 EDO 1 1301 101 EDO EDO A . F 2 EDO 1 1302 103 EDO EDO A . G 3 ZN 1 1301 1 ZN ZN C . H 2 EDO 1 1301 102 EDO EDO D . I 3 ZN 1 1302 2 ZN ZN D . J 4 HOH 1 1401 2 HOH HOH A . J 4 HOH 2 1402 33 HOH HOH A . J 4 HOH 3 1403 43 HOH HOH A . J 4 HOH 4 1404 66 HOH HOH A . J 4 HOH 5 1405 1 HOH HOH A . J 4 HOH 6 1406 51 HOH HOH A . J 4 HOH 7 1407 73 HOH HOH A . J 4 HOH 8 1408 29 HOH HOH A . J 4 HOH 9 1409 10 HOH HOH A . J 4 HOH 10 1410 34 HOH HOH A . J 4 HOH 11 1411 18 HOH HOH A . J 4 HOH 12 1412 52 HOH HOH A . J 4 HOH 13 1413 65 HOH HOH A . J 4 HOH 14 1414 54 HOH HOH A . J 4 HOH 15 1415 58 HOH HOH A . J 4 HOH 16 1416 53 HOH HOH A . J 4 HOH 17 1417 64 HOH HOH A . K 4 HOH 1 1301 26 HOH HOH B . K 4 HOH 2 1302 68 HOH HOH B . K 4 HOH 3 1303 5 HOH HOH B . K 4 HOH 4 1304 72 HOH HOH B . K 4 HOH 5 1305 75 HOH HOH B . K 4 HOH 6 1306 21 HOH HOH B . K 4 HOH 7 1307 62 HOH HOH B . K 4 HOH 8 1308 59 HOH HOH B . K 4 HOH 9 1309 47 HOH HOH B . K 4 HOH 10 1310 50 HOH HOH B . K 4 HOH 11 1311 28 HOH HOH B . K 4 HOH 12 1312 6 HOH HOH B . K 4 HOH 13 1313 41 HOH HOH B . K 4 HOH 14 1314 74 HOH HOH B . K 4 HOH 15 1315 78 HOH HOH B . L 4 HOH 1 1401 69 HOH HOH C . L 4 HOH 2 1402 24 HOH HOH C . L 4 HOH 3 1403 35 HOH HOH C . L 4 HOH 4 1404 16 HOH HOH C . L 4 HOH 5 1405 25 HOH HOH C . L 4 HOH 6 1406 19 HOH HOH C . L 4 HOH 7 1407 12 HOH HOH C . L 4 HOH 8 1408 13 HOH HOH C . L 4 HOH 9 1409 8 HOH HOH C . L 4 HOH 10 1410 38 HOH HOH C . L 4 HOH 11 1411 4 HOH HOH C . L 4 HOH 12 1412 36 HOH HOH C . L 4 HOH 13 1413 56 HOH HOH C . L 4 HOH 14 1414 3 HOH HOH C . L 4 HOH 15 1415 11 HOH HOH C . L 4 HOH 16 1416 15 HOH HOH C . L 4 HOH 17 1417 9 HOH HOH C . L 4 HOH 18 1418 31 HOH HOH C . L 4 HOH 19 1419 7 HOH HOH C . L 4 HOH 20 1420 71 HOH HOH C . L 4 HOH 21 1421 42 HOH HOH C . L 4 HOH 22 1422 70 HOH HOH C . L 4 HOH 23 1423 27 HOH HOH C . L 4 HOH 24 1424 76 HOH HOH C . L 4 HOH 25 1425 49 HOH HOH C . L 4 HOH 26 1426 77 HOH HOH C . M 4 HOH 1 1401 48 HOH HOH D . M 4 HOH 2 1402 40 HOH HOH D . M 4 HOH 3 1403 23 HOH HOH D . M 4 HOH 4 1404 55 HOH HOH D . M 4 HOH 5 1405 46 HOH HOH D . M 4 HOH 6 1406 14 HOH HOH D . M 4 HOH 7 1407 45 HOH HOH D . M 4 HOH 8 1408 17 HOH HOH D . M 4 HOH 9 1409 22 HOH HOH D . M 4 HOH 10 1410 20 HOH HOH D . M 4 HOH 11 1411 44 HOH HOH D . M 4 HOH 12 1412 37 HOH HOH D . M 4 HOH 13 1413 39 HOH HOH D . M 4 HOH 14 1414 63 HOH HOH D . M 4 HOH 15 1415 32 HOH HOH D . M 4 HOH 16 1416 57 HOH HOH D . M 4 HOH 17 1417 60 HOH HOH D . M 4 HOH 18 1418 61 HOH HOH D . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5430 ? 1 MORE -67 ? 1 'SSA (A^2)' 6410 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OE2 ? A GLU 19 ? A GLU 1195 ? 1_555 ZN ? I ZN . ? D ZN 1302 ? 4_446 OD1 ? A ASP 23 ? A ASP 1199 ? 1_555 84.8 ? 2 OE2 ? A GLU 19 ? A GLU 1195 ? 1_555 ZN ? I ZN . ? D ZN 1302 ? 4_446 OD2 ? A ASP 23 ? A ASP 1199 ? 1_555 119.6 ? 3 OD1 ? A ASP 23 ? A ASP 1199 ? 1_555 ZN ? I ZN . ? D ZN 1302 ? 4_446 OD2 ? A ASP 23 ? A ASP 1199 ? 1_555 53.2 ? 4 OE2 ? A GLU 19 ? A GLU 1195 ? 1_555 ZN ? I ZN . ? D ZN 1302 ? 4_446 OE1 ? D GLU 19 ? D GLU 1195 ? 1_555 38.1 ? 5 OD1 ? A ASP 23 ? A ASP 1199 ? 1_555 ZN ? I ZN . ? D ZN 1302 ? 4_446 OE1 ? D GLU 19 ? D GLU 1195 ? 1_555 76.0 ? 6 OD2 ? A ASP 23 ? A ASP 1199 ? 1_555 ZN ? I ZN . ? D ZN 1302 ? 4_446 OE1 ? D GLU 19 ? D GLU 1195 ? 1_555 86.2 ? 7 OE2 ? A GLU 19 ? A GLU 1195 ? 1_555 ZN ? I ZN . ? D ZN 1302 ? 4_446 OD2 ? D ASP 23 ? D ASP 1199 ? 1_555 42.0 ? 8 OD1 ? A ASP 23 ? A ASP 1199 ? 1_555 ZN ? I ZN . ? D ZN 1302 ? 4_446 OD2 ? D ASP 23 ? D ASP 1199 ? 1_555 81.0 ? 9 OD2 ? A ASP 23 ? A ASP 1199 ? 1_555 ZN ? I ZN . ? D ZN 1302 ? 4_446 OD2 ? D ASP 23 ? D ASP 1199 ? 1_555 85.6 ? 10 OE1 ? D GLU 19 ? D GLU 1195 ? 1_555 ZN ? I ZN . ? D ZN 1302 ? 4_446 OD2 ? D ASP 23 ? D ASP 1199 ? 1_555 6.6 ? 11 OD2 ? C ASP 8 ? C ASP 1184 ? 1_555 ZN ? G ZN . ? C ZN 1301 ? 1_555 OE1 ? C GLU 19 ? C GLU 1195 ? 1_555 70.0 ? 12 OD2 ? C ASP 8 ? C ASP 1184 ? 1_555 ZN ? G ZN . ? C ZN 1301 ? 1_555 OD1 ? C ASP 23 ? C ASP 1199 ? 1_555 66.8 ? 13 OE1 ? C GLU 19 ? C GLU 1195 ? 1_555 ZN ? G ZN . ? C ZN 1301 ? 1_555 OD1 ? C ASP 23 ? C ASP 1199 ? 1_555 4.5 ? 14 OD2 ? C ASP 8 ? C ASP 1184 ? 1_555 ZN ? G ZN . ? C ZN 1301 ? 1_555 OD2 ? C ASP 23 ? C ASP 1199 ? 1_555 71.1 ? 15 OE1 ? C GLU 19 ? C GLU 1195 ? 1_555 ZN ? G ZN . ? C ZN 1301 ? 1_555 OD2 ? C ASP 23 ? C ASP 1199 ? 1_555 5.6 ? 16 OD1 ? C ASP 23 ? C ASP 1199 ? 1_555 ZN ? G ZN . ? C ZN 1301 ? 1_555 OD2 ? C ASP 23 ? C ASP 1199 ? 1_555 4.8 ? 17 OD2 ? C ASP 8 ? C ASP 1184 ? 1_555 ZN ? G ZN . ? C ZN 1301 ? 1_555 O ? L HOH . ? C HOH 1418 ? 3_755 104.7 ? 18 OE1 ? C GLU 19 ? C GLU 1195 ? 1_555 ZN ? G ZN . ? C ZN 1301 ? 1_555 O ? L HOH . ? C HOH 1418 ? 3_755 38.7 ? 19 OD1 ? C ASP 23 ? C ASP 1199 ? 1_555 ZN ? G ZN . ? C ZN 1301 ? 1_555 O ? L HOH . ? C HOH 1418 ? 3_755 40.3 ? 20 OD2 ? C ASP 23 ? C ASP 1199 ? 1_555 ZN ? G ZN . ? C ZN 1301 ? 1_555 O ? L HOH . ? C HOH 1418 ? 3_755 35.5 ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2022-03-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 28.7598 -10.7792 20.5373 0.2539 ? 0.0039 ? 0.0082 ? 0.2381 ? -0.0005 ? 0.2903 ? 0.0934 ? 0.0179 ? -0.0353 ? 0.0035 ? -0.0070 ? 0.0129 ? 0.0361 ? -0.0149 ? 0.1799 ? 0.1078 ? 0.0988 ? 0.2489 ? 0.0606 ? -0.0716 ? 0.0031 ? 2 'X-RAY DIFFRACTION' ? refined 29.1243 -15.2658 12.0883 0.2991 ? -0.0191 ? -0.0324 ? 0.3271 ? -0.0313 ? 0.3034 ? 0.0901 ? 0.0315 ? 0.1075 ? 0.0678 ? 0.0620 ? 0.1387 ? -0.1457 ? 0.1953 ? 0.1741 ? -0.0124 ? 0.2733 ? 0.3066 ? 0.1116 ? -0.3729 ? 0.0004 ? 3 'X-RAY DIFFRACTION' ? refined 39.2877 -14.7208 12.6497 0.2623 ? 0.0044 ? 0.0195 ? 0.2361 ? -0.0240 ? 0.2438 ? 0.1326 ? 0.0232 ? -0.0339 ? 0.0535 ? 0.0562 ? 0.0859 ? 0.0133 ? -0.0220 ? -0.0188 ? -0.1485 ? -0.0755 ? -0.0535 ? 0.0193 ? 0.0142 ? 0.0000 ? 4 'X-RAY DIFFRACTION' ? refined 38.6409 -14.1288 21.7977 0.2377 ? 0.0156 ? 0.0217 ? 0.2563 ? 0.0101 ? 0.2622 ? 0.2228 ? -0.0465 ? -0.0266 ? 0.0181 ? 0.0570 ? 0.3216 ? 0.0336 ? -0.1072 ? -0.0046 ? 0.2083 ? -0.1195 ? -0.2023 ? 0.0402 ? 0.0471 ? -0.0001 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? A 1177 ? ? ? A 1203 ? ? ;(chain 'A' and resid 1177 through 1203) ; 2 'X-RAY DIFFRACTION' 2 ? ? B 1177 ? ? ? B 1203 ? ? ;(chain 'B' and resid 1177 through 1203) ; 3 'X-RAY DIFFRACTION' 3 ? ? C 1177 ? ? ? C 1203 ? ? ;(chain 'C' and resid 1177 through 1203) ; 4 'X-RAY DIFFRACTION' 4 ? ? D 1177 ? ? ? D 1203 ? ? ;(chain 'D' and resid 1177 through 1203) ; # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.12_2829 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.27 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? Arcimboldo ? ? ? . 5 # _pdbx_entry_details.entry_id 7OWX _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A TYR 1177 ? N ? A TYR 1 N 2 1 Y 1 A TYR 1177 ? CA ? A TYR 1 CA 3 1 Y 1 A TYR 1177 ? CB ? A TYR 1 CB 4 1 Y 1 A TYR 1177 ? CG ? A TYR 1 CG 5 1 Y 1 A TYR 1177 ? CD1 ? A TYR 1 CD1 6 1 Y 1 A TYR 1177 ? CD2 ? A TYR 1 CD2 7 1 Y 1 A TYR 1177 ? CE1 ? A TYR 1 CE1 8 1 Y 1 A TYR 1177 ? CE2 ? A TYR 1 CE2 9 1 Y 1 A TYR 1177 ? CZ ? A TYR 1 CZ 10 1 Y 1 A TYR 1177 ? OH ? A TYR 1 OH 11 1 Y 1 D TYR 1177 ? CG ? D TYR 1 CG 12 1 Y 1 D TYR 1177 ? CD1 ? D TYR 1 CD1 13 1 Y 1 D TYR 1177 ? CD2 ? D TYR 1 CD2 14 1 Y 1 D TYR 1177 ? CE1 ? D TYR 1 CE1 15 1 Y 1 D TYR 1177 ? CE2 ? D TYR 1 CE2 16 1 Y 1 D TYR 1177 ? CZ ? D TYR 1 CZ 17 1 Y 1 D TYR 1177 ? OH ? D TYR 1 OH 18 1 Y 1 D LEU 1203 ? CG ? D LEU 27 CG 19 1 Y 1 D LEU 1203 ? CD1 ? D LEU 27 CD1 20 1 Y 1 D LEU 1203 ? CD2 ? D LEU 27 CD2 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Slovenian Research Agency' Slovenia J1-1706 1 'Slovenian Research Agency' Slovenia P1-0201 2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,2-ETHANEDIOL EDO 3 'ZINC ION' ZN 4 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support SAXS _pdbx_struct_assembly_auth_evidence.details 'tetramer in crystal, trimer in solution' #