HEADER CYTOKINE 22-JUN-21 7OX3 TITLE FAB 6D3: HIL-9 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIGHT CHAIN (FAB 6D3); COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HEAVY CHAIN (FAB 6D3); COMPND 7 CHAIN: A; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: INTERLEUKIN-9; COMPND 11 CHAIN: C; COMPND 12 SYNONYM: IL-9,CYTOKINE P40,T-CELL GROWTH FACTOR P40; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 19 ORGANISM_COMMON: HUMAN; SOURCE 20 ORGANISM_TAXID: 9606; SOURCE 21 GENE: IL9; SOURCE 22 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 23 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS IL-9, COMPLEX, CYTOKINE EXPDTA X-RAY DIFFRACTION AUTHOR T.DE VOS,S.N.SAVVIDES REVDAT 3 31-JAN-24 7OX3 1 REMARK REVDAT 2 11-JAN-23 7OX3 1 JRNL REVDAT 1 28-DEC-22 7OX3 0 JRNL AUTH T.DE VOS,M.GODAR,F.BICK,A.C.PAPAGEORGIOU,T.EVANGELIDIS, JRNL AUTH 2 I.MARKOVIC,E.MORTIER,L.DUMOUTIER,K.TRIPSIANES,C.BLANCHETOT, JRNL AUTH 3 S.N.SAVVIDES JRNL TITL STRUCTURAL BASIS FOR THE MECHANISM AND ANTAGONISM OF JRNL TITL 2 RECEPTOR SIGNALING MEDIATED BY INTERLEUKIN-9 (IL-9) JRNL REF BIORXIV 2022 JRNL REFN ISSN 2692-8205 JRNL DOI 10.1101/2022.12.30.522308 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 63802 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3188 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.6400 - 4.8300 0.98 2827 148 0.1611 0.1772 REMARK 3 2 4.8300 - 3.8400 1.00 2739 145 0.1337 0.1713 REMARK 3 3 3.8400 - 3.3500 1.00 2701 142 0.1576 0.1650 REMARK 3 4 3.3500 - 3.0500 1.00 2684 141 0.1792 0.2331 REMARK 3 5 3.0500 - 2.8300 0.99 2665 140 0.1823 0.2042 REMARK 3 6 2.8300 - 2.6600 1.00 2664 140 0.1858 0.2257 REMARK 3 7 2.6600 - 2.5300 0.99 2635 139 0.1937 0.2432 REMARK 3 8 2.5300 - 2.4200 1.00 2644 139 0.1915 0.2428 REMARK 3 9 2.4200 - 2.3200 1.00 2649 140 0.1883 0.2318 REMARK 3 10 2.3200 - 2.2400 1.00 2634 138 0.1714 0.2164 REMARK 3 11 2.2400 - 2.1700 0.99 2633 139 0.1867 0.2122 REMARK 3 12 2.1700 - 2.1100 1.00 2616 138 0.1817 0.2506 REMARK 3 13 2.1100 - 2.0600 1.00 2626 138 0.1896 0.2382 REMARK 3 14 2.0600 - 2.0100 0.99 2622 138 0.1934 0.2121 REMARK 3 15 2.0100 - 1.9600 0.98 2584 135 0.1960 0.2473 REMARK 3 16 1.9600 - 1.9200 0.99 2618 138 0.2085 0.2598 REMARK 3 17 1.9200 - 1.8800 0.99 2596 136 0.2200 0.2795 REMARK 3 18 1.8800 - 1.8500 1.00 2616 138 0.2200 0.2567 REMARK 3 19 1.8500 - 1.8100 0.99 2610 138 0.2393 0.2933 REMARK 3 20 1.8100 - 1.7800 1.00 2576 135 0.2473 0.2622 REMARK 3 21 1.7800 - 1.7500 0.98 2585 136 0.2584 0.3181 REMARK 3 22 1.7500 - 1.7300 0.99 2611 138 0.2883 0.2985 REMARK 3 23 1.7300 - 1.7000 0.95 2479 129 0.3358 0.3858 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.6533 34.6970 31.5127 REMARK 3 T TENSOR REMARK 3 T11: 0.1981 T22: 0.1873 REMARK 3 T33: 0.1834 T12: 0.0106 REMARK 3 T13: -0.0013 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 3.4802 L22: 3.0636 REMARK 3 L33: 5.6168 L12: 1.5927 REMARK 3 L13: -2.6792 L23: -2.4803 REMARK 3 S TENSOR REMARK 3 S11: 0.0914 S12: 0.2676 S13: 0.1793 REMARK 3 S21: 0.1033 S22: 0.1170 S23: 0.1297 REMARK 3 S31: -0.3125 S32: -0.1909 S33: -0.1983 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 109 THROUGH 211 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.6375 22.0013 -4.8693 REMARK 3 T TENSOR REMARK 3 T11: 0.1855 T22: 0.4507 REMARK 3 T33: 0.3356 T12: 0.0409 REMARK 3 T13: 0.0091 T23: -0.1509 REMARK 3 L TENSOR REMARK 3 L11: 1.3265 L22: 5.3960 REMARK 3 L33: 2.3459 L12: 0.9484 REMARK 3 L13: 0.3367 L23: 2.0879 REMARK 3 S TENSOR REMARK 3 S11: 0.1649 S12: 0.1014 S13: -0.1623 REMARK 3 S21: -0.1270 S22: -0.3701 S23: 0.2313 REMARK 3 S31: -0.0099 S32: -0.3557 S33: 0.1814 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.6626 14.7925 33.6109 REMARK 3 T TENSOR REMARK 3 T11: 0.2555 T22: 0.2212 REMARK 3 T33: 0.2187 T12: -0.0222 REMARK 3 T13: -0.0033 T23: -0.0176 REMARK 3 L TENSOR REMARK 3 L11: 1.5899 L22: 1.0049 REMARK 3 L33: 4.9134 L12: 1.2284 REMARK 3 L13: 1.1807 L23: 1.2217 REMARK 3 S TENSOR REMARK 3 S11: -0.0383 S12: 0.2928 S13: -0.2116 REMARK 3 S21: 0.0083 S22: 0.1723 S23: 0.0466 REMARK 3 S31: 0.4328 S32: -0.0084 S33: -0.1156 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 117 THROUGH 220 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.9377 9.3488 6.2181 REMARK 3 T TENSOR REMARK 3 T11: 0.2437 T22: 0.3090 REMARK 3 T33: 0.5199 T12: 0.0191 REMARK 3 T13: -0.0592 T23: -0.0609 REMARK 3 L TENSOR REMARK 3 L11: 7.2745 L22: 1.1950 REMARK 3 L33: 2.4445 L12: 2.2614 REMARK 3 L13: -2.6178 L23: -0.1026 REMARK 3 S TENSOR REMARK 3 S11: 0.0436 S12: 0.0050 S13: -0.9860 REMARK 3 S21: 0.1048 S22: -0.0504 S23: -0.6272 REMARK 3 S31: 0.3129 S32: 0.3122 S33: 0.0333 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 20 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.8698 25.2977 63.0938 REMARK 3 T TENSOR REMARK 3 T11: 0.2371 T22: 0.2128 REMARK 3 T33: 0.1664 T12: -0.0125 REMARK 3 T13: -0.0159 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 2.8673 L22: 2.7196 REMARK 3 L33: 2.8729 L12: 0.1493 REMARK 3 L13: -0.9051 L23: -0.2603 REMARK 3 S TENSOR REMARK 3 S11: 0.0084 S12: -0.3112 S13: 0.0436 REMARK 3 S21: 0.2256 S22: -0.0595 S23: -0.0097 REMARK 3 S31: 0.0411 S32: 0.1799 S33: 0.0636 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7OX3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1292116240. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-AUG-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63819 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 48.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.5900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5NIV, 6CT7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M AMMONIUM SULFATE, 0.1M TRIS, 16% REMARK 280 PEG 1500, PH 5.8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 30.24000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.93000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.24000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.93000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -104.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 30.24000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 40.93000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 116.54000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 546 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 556 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 371 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU B 1 REMARK 465 SER B 2 REMARK 465 GLU B 212 REMARK 465 CYS B 213 REMARK 465 SER B 214 REMARK 465 SER A 134 REMARK 465 SER A 135 REMARK 465 LYS A 136 REMARK 465 SER A 137 REMARK 465 THR A 138 REMARK 465 LYS A 221 REMARK 465 SER A 222 REMARK 465 CYS A 223 REMARK 465 GLY C 15 REMARK 465 SER C 16 REMARK 465 HIS C 17 REMARK 465 MET C 18 REMARK 465 GLN C 19 REMARK 465 GLY C 139 REMARK 465 MET C 140 REMARK 465 ARG C 141 REMARK 465 GLY C 142 REMARK 465 LYS C 143 REMARK 465 ILE C 144 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 494 O HOH B 571 2.08 REMARK 500 OE1 GLN A 16 O HOH A 301 2.10 REMARK 500 OH TYR B 174 O1 SO4 B 301 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O LEU A 196 NZ LYS A 217 2655 2.07 REMARK 500 OE1 GLN A 1 NE2 GLN C 115 4556 2.11 REMARK 500 O HOH B 571 O HOH B 571 2665 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 22 CA - CB - SG ANGL. DEV. = 7.1 DEGREES REMARK 500 PRO A 133 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 CYS A 147 CA - CB - SG ANGL. DEV. = 8.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 51 -49.06 71.98 REMARK 500 ASP B 52 13.15 -142.49 REMARK 500 SER B 90 -148.38 -145.81 REMARK 500 PRO B 143 -175.32 -67.37 REMARK 500 ASP B 153 -106.13 60.33 REMARK 500 SER A 15 -14.72 83.80 REMARK 500 ASP A 151 70.75 65.25 REMARK 500 THR A 198 -18.49 -143.62 REMARK 500 THR C 52 -73.93 -109.56 REMARK 500 TYR C 106 -2.36 76.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 44 LYS A 45 -142.84 REMARK 500 REMARK 500 REMARK: NULL DBREF 7OX3 B 1 214 PDB 7OX3 7OX3 1 214 DBREF 7OX3 A 1 223 PDB 7OX3 7OX3 1 223 DBREF 7OX3 C 19 144 UNP P15248 IL9_HUMAN 19 144 SEQADV 7OX3 GLY C 15 UNP P15248 EXPRESSION TAG SEQADV 7OX3 SER C 16 UNP P15248 EXPRESSION TAG SEQADV 7OX3 HIS C 17 UNP P15248 EXPRESSION TAG SEQADV 7OX3 MET C 18 UNP P15248 EXPRESSION TAG SEQRES 1 B 214 LEU SER TYR GLU LEU THR GLN PRO SER ALA LEU SER VAL SEQRES 2 B 214 THR LEU GLY GLN THR ALA LYS ILE THR CYS GLN GLY GLY SEQRES 3 B 214 SER LEU GLY SER SER TYR ALA HIS TRP TYR GLN GLN LYS SEQRES 4 B 214 PRO ASP GLN ALA PRO ILE LEU VAL ILE TYR ASP ASP ASP SEQRES 5 B 214 SER ARG PRO SER GLY ILE PRO GLU ARG PHE SER GLY SER SEQRES 6 B 214 SER SER GLY GLY THR ALA THR LEU THR ILE SER GLY ALA SEQRES 7 B 214 GLN ALA GLU ASP GLU GLY ASP TYR TYR CYS GLN SER TYR SEQRES 8 B 214 ASP SER SER ALA ASN PHE VAL PHE GLY GLY GLY THR LYS SEQRES 9 B 214 LEU THR VAL LEU GLY GLN PRO LYS ALA ALA PRO SER VAL SEQRES 10 B 214 THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN ALA ASN SEQRES 11 B 214 LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE TYR PRO SEQRES 12 B 214 GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SER PRO SEQRES 13 B 214 VAL LYS ALA GLY VAL GLU THR THR THR PRO SER LYS GLN SEQRES 14 B 214 SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SER LEU SEQRES 15 B 214 THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SER CYS SEQRES 16 B 214 GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS THR VAL SEQRES 17 B 214 ALA PRO THR GLU CYS SER SEQRES 1 A 223 GLN VAL GLN VAL GLN GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 A 223 PRO SER GLN THR LEU SER LEU THR CYS THR VAL SER GLY SEQRES 3 A 223 GLY PRO ILE THR THR ARG TYR TYR ALA TRP SER TRP ILE SEQRES 4 A 223 ARG GLN PRO PRO GLY LYS GLY LEU GLU TRP MET GLY LEU SEQRES 5 A 223 ILE ASP TYR ASP GLY SER VAL TYR TYR SER PRO SER LEU SEQRES 6 A 223 LYS SER ARG THR SER ILE SER ARG ASP THR ALA LYS ASN SEQRES 7 A 223 GLN PHE SER LEU GLN LEU SER SER VAL THR PRO GLU ASP SEQRES 8 A 223 THR ALA VAL TYR TYR CYS ALA ARG VAL SER ALA ALA THR SEQRES 9 A 223 LEU PHE LEU ASP TYR TRP GLY GLN GLY THR GLN VAL THR SEQRES 10 A 223 VAL SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO SEQRES 11 A 223 LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA SEQRES 12 A 223 ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO SEQRES 13 A 223 VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY SEQRES 14 A 223 VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU SEQRES 15 A 223 TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SER SEQRES 16 A 223 LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS SEQRES 17 A 223 PRO SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SEQRES 18 A 223 SER CYS SEQRES 1 C 130 GLY SER HIS MET GLN GLY CYS PRO THR LEU ALA GLY ILE SEQRES 2 C 130 LEU ASP ILE ASN PHE LEU ILE ASN LYS MET GLN GLU ASP SEQRES 3 C 130 PRO ALA SER LYS CYS HIS CYS SER ALA ASN VAL THR SER SEQRES 4 C 130 CYS LEU CYS LEU GLY ILE PRO SER ASP ASN CYS THR ARG SEQRES 5 C 130 PRO CYS PHE SER GLU ARG LEU SER GLN MET THR ASN THR SEQRES 6 C 130 THR MET GLN THR ARG TYR PRO LEU ILE PHE SER ARG VAL SEQRES 7 C 130 LYS LYS SER VAL GLU VAL LEU LYS ASN ASN LYS CYS PRO SEQRES 8 C 130 TYR PHE SER CYS GLU GLN PRO CYS ASN GLN THR THR ALA SEQRES 9 C 130 GLY ASN ALA LEU THR PHE LEU LYS SER LEU LEU GLU ILE SEQRES 10 C 130 PHE GLN LYS GLU LYS MET ARG GLY MET ARG GLY LYS ILE HET SO4 B 301 5 HET SO4 C 201 5 HET SO4 C 202 5 HET SO4 C 203 5 HET SO4 C 204 5 HETNAM SO4 SULFATE ION FORMUL 4 SO4 5(O4 S 2-) FORMUL 9 HOH *424(H2 O) HELIX 1 AA1 GLN B 79 GLU B 83 5 5 HELIX 2 AA2 SER B 123 ALA B 129 1 7 HELIX 3 AA3 THR B 183 HIS B 190 1 8 HELIX 4 AA4 LEU A 65 SER A 67 5 3 HELIX 5 AA5 THR A 75 LYS A 77 5 3 HELIX 6 AA6 THR A 88 THR A 92 5 5 HELIX 7 AA7 SER A 194 THR A 198 5 5 HELIX 8 AA8 LYS A 208 ASN A 211 5 4 HELIX 9 AA9 THR C 23 GLN C 38 1 16 HELIX 10 AB1 ASP C 40 CYS C 45 1 6 HELIX 11 AB2 CYS C 68 MET C 76 1 9 HELIX 12 AB3 THR C 79 TYR C 85 1 7 HELIX 13 AB4 TYR C 85 ASN C 102 1 18 HELIX 14 AB5 ASN C 120 ARG C 138 1 19 SHEET 1 AA1 5 ALA B 10 THR B 14 0 SHEET 2 AA1 5 THR B 103 LEU B 108 1 O LEU B 108 N VAL B 13 SHEET 3 AA1 5 GLY B 84 TYR B 91 -1 N GLY B 84 O LEU B 105 SHEET 4 AA1 5 HIS B 34 GLN B 38 -1 N GLN B 38 O ASP B 85 SHEET 5 AA1 5 ILE B 45 ILE B 48 -1 O ILE B 48 N TRP B 35 SHEET 1 AA2 4 ALA B 10 THR B 14 0 SHEET 2 AA2 4 THR B 103 LEU B 108 1 O LEU B 108 N VAL B 13 SHEET 3 AA2 4 GLY B 84 TYR B 91 -1 N GLY B 84 O LEU B 105 SHEET 4 AA2 4 PHE B 97 PHE B 99 -1 O VAL B 98 N SER B 90 SHEET 1 AA3 3 ALA B 19 GLN B 24 0 SHEET 2 AA3 3 THR B 70 ILE B 75 -1 O LEU B 73 N ILE B 21 SHEET 3 AA3 3 PHE B 62 SER B 67 -1 N SER B 63 O THR B 74 SHEET 1 AA4 4 SER B 116 PHE B 120 0 SHEET 2 AA4 4 ALA B 132 PHE B 141 -1 O LEU B 137 N THR B 118 SHEET 3 AA4 4 TYR B 174 LEU B 182 -1 O SER B 178 N CYS B 136 SHEET 4 AA4 4 VAL B 161 THR B 163 -1 N GLU B 162 O TYR B 179 SHEET 1 AA5 4 SER B 116 PHE B 120 0 SHEET 2 AA5 4 ALA B 132 PHE B 141 -1 O LEU B 137 N THR B 118 SHEET 3 AA5 4 TYR B 174 LEU B 182 -1 O SER B 178 N CYS B 136 SHEET 4 AA5 4 SER B 167 LYS B 168 -1 N SER B 167 O ALA B 175 SHEET 1 AA6 4 SER B 155 VAL B 157 0 SHEET 2 AA6 4 THR B 147 ALA B 152 -1 N ALA B 152 O SER B 155 SHEET 3 AA6 4 TYR B 193 HIS B 199 -1 O GLN B 196 N ALA B 149 SHEET 4 AA6 4 SER B 202 VAL B 208 -1 O VAL B 204 N VAL B 197 SHEET 1 AA7 4 GLN A 3 SER A 7 0 SHEET 2 AA7 4 LEU A 18 SER A 25 -1 O THR A 23 N GLN A 5 SHEET 3 AA7 4 GLN A 79 LEU A 84 -1 O PHE A 80 N CYS A 22 SHEET 4 AA7 4 THR A 69 ASP A 74 -1 N SER A 72 O SER A 81 SHEET 1 AA8 6 LEU A 11 VAL A 12 0 SHEET 2 AA8 6 THR A 114 VAL A 118 1 O THR A 117 N VAL A 12 SHEET 3 AA8 6 ALA A 93 SER A 101 -1 N TYR A 95 O THR A 114 SHEET 4 AA8 6 TYR A 34 GLN A 41 -1 N ALA A 35 O VAL A 100 SHEET 5 AA8 6 GLU A 48 ILE A 53 -1 O GLU A 48 N ARG A 40 SHEET 6 AA8 6 VAL A 59 TYR A 61 -1 O TYR A 60 N LEU A 52 SHEET 1 AA9 4 LEU A 11 VAL A 12 0 SHEET 2 AA9 4 THR A 114 VAL A 118 1 O THR A 117 N VAL A 12 SHEET 3 AA9 4 ALA A 93 SER A 101 -1 N TYR A 95 O THR A 114 SHEET 4 AA9 4 PHE A 106 TRP A 110 -1 O PHE A 106 N SER A 101 SHEET 1 AB1 4 SER A 127 LEU A 131 0 SHEET 2 AB1 4 THR A 142 TYR A 152 -1 O LYS A 150 N SER A 127 SHEET 3 AB1 4 TYR A 183 PRO A 192 -1 O LEU A 185 N VAL A 149 SHEET 4 AB1 4 VAL A 170 THR A 172 -1 N HIS A 171 O VAL A 188 SHEET 1 AB2 4 SER A 127 LEU A 131 0 SHEET 2 AB2 4 THR A 142 TYR A 152 -1 O LYS A 150 N SER A 127 SHEET 3 AB2 4 TYR A 183 PRO A 192 -1 O LEU A 185 N VAL A 149 SHEET 4 AB2 4 VAL A 176 LEU A 177 -1 N VAL A 176 O SER A 184 SHEET 1 AB3 3 THR A 158 TRP A 161 0 SHEET 2 AB3 3 TYR A 201 HIS A 207 -1 O ASN A 204 N SER A 160 SHEET 3 AB3 3 THR A 212 VAL A 218 -1 O LYS A 216 N CYS A 203 SHEET 1 AB4 2 LEU C 57 ILE C 59 0 SHEET 2 AB4 2 THR C 117 GLY C 119 -1 O GLY C 119 N LEU C 57 SSBOND 1 CYS B 23 CYS B 88 1555 1555 2.07 SSBOND 2 CYS B 136 CYS B 195 1555 1555 2.05 SSBOND 3 CYS A 22 CYS A 97 1555 1555 2.02 SSBOND 4 CYS A 147 CYS A 203 1555 1555 2.03 SSBOND 5 CYS C 21 CYS C 104 1555 1555 2.05 SSBOND 6 CYS C 45 CYS C 54 1555 1555 2.05 SSBOND 7 CYS C 47 CYS C 56 1555 1555 2.08 SSBOND 8 CYS C 64 CYS C 113 1555 1555 2.13 SSBOND 9 CYS C 68 CYS C 109 1555 1555 2.06 CISPEP 1 TYR B 142 PRO B 143 0 -2.82 CISPEP 2 PHE A 153 PRO A 154 0 -5.63 CISPEP 3 GLU A 155 PRO A 156 0 -3.18 CRYST1 60.480 81.860 116.540 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016534 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012216 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008581 0.00000