HEADER CYTOKINE 22-JUN-21 7OX6 TITLE SOLUTION STRUCTURE OF HUMAN INTERLEUKIN-9 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERLEUKIN-9; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IL-9,CYTOKINE P40,T-CELL GROWTH FACTOR P40; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IL9; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS FOUR-HELICAL BUNDLE, IL-9, CYTOKINE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.N.SAVVIDES,K.TRIPSIANES,T.DE VOS,A.PAPAGEORGIOU,T.EVANGELIDIS REVDAT 2 11-JAN-23 7OX6 1 JRNL REVDAT 1 28-DEC-22 7OX6 0 JRNL AUTH T.DE VOS,M.GODAR,F.BICK,A.C.PAPAGEORGIOU,T.EVANGELIDIS, JRNL AUTH 2 I.MARKOVIC,E.MORTIER,L.DUMOUTIER,K.TRIPSIANES,C.BLANCHETOT, JRNL AUTH 3 S.N.SAVVIDES JRNL TITL STRUCTURAL BASIS FOR THE MECHANISM AND ANTAGONISM OF JRNL TITL 2 RECEPTOR SIGNALING MEDIATED BY INTERLEUKIN-9 (IL-9) JRNL REF BIORXIV 2022 JRNL REFN ISSN 2692-8205 JRNL DOI 10.1101/2022.12.30.522308 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER A. T. ET.AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7OX6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1292116201. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 60 MG/ML [U-13C; U-15N] REMARK 210 INTERLEUKIN-9, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 4D HC(CC TOCSY(CO))NH; 4D REMARK 210 13C,15N EDITED HMQC-NOESY-HSQC; REMARK 210 4D 13C,13C EDITED HMQC-NOESY-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 850 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, 4D-CHAINS, SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 15 REMARK 465 SER A 16 REMARK 465 HIS A 17 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 40 HH12 ARG A 84 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 46 160.86 70.64 REMARK 500 1 ALA A 49 -54.45 -174.67 REMARK 500 1 VAL A 51 110.55 71.32 REMARK 500 1 THR A 52 -78.60 -79.01 REMARK 500 1 SER A 53 20.54 -155.14 REMARK 500 1 ARG A 66 83.31 -152.30 REMARK 500 1 THR A 77 -49.10 -137.25 REMARK 500 2 ARG A 66 86.87 67.91 REMARK 500 2 THR A 77 -45.76 -150.11 REMARK 500 2 PRO A 112 133.68 -38.09 REMARK 500 3 SER A 48 -68.64 -156.55 REMARK 500 3 ALA A 49 -62.84 -159.56 REMARK 500 3 CYS A 54 -109.78 -82.22 REMARK 500 3 ARG A 66 79.90 72.74 REMARK 500 3 THR A 77 -54.54 -135.85 REMARK 500 3 THR A 79 126.10 -39.09 REMARK 500 3 PRO A 105 -35.32 -34.15 REMARK 500 3 PRO A 112 133.66 -34.49 REMARK 500 3 ARG A 141 108.99 -52.29 REMARK 500 4 SER A 48 -89.83 -148.33 REMARK 500 4 ASN A 50 -38.43 74.44 REMARK 500 4 THR A 52 31.26 -143.93 REMARK 500 4 PRO A 67 44.49 -90.18 REMARK 500 4 THR A 77 -54.06 -142.86 REMARK 500 4 GLU A 110 1.41 -64.39 REMARK 500 5 GLN A 19 -76.39 -85.22 REMARK 500 5 SER A 53 -51.71 64.73 REMARK 500 5 CYS A 54 -166.18 -114.32 REMARK 500 5 PRO A 67 106.16 -58.87 REMARK 500 5 THR A 77 -60.35 -136.55 REMARK 500 5 THR A 79 122.78 -38.02 REMARK 500 6 HIS A 46 107.12 59.44 REMARK 500 6 ALA A 49 -62.45 -165.84 REMARK 500 6 THR A 65 93.46 -67.97 REMARK 500 6 ARG A 66 88.00 65.82 REMARK 500 6 THR A 77 -50.62 -145.33 REMARK 500 6 PRO A 105 -45.71 -29.64 REMARK 500 6 CYS A 109 -3.91 -59.76 REMARK 500 7 GLN A 19 -72.01 -71.08 REMARK 500 7 PRO A 67 30.07 -93.86 REMARK 500 7 THR A 77 -65.41 -138.24 REMARK 500 7 PRO A 112 136.48 -27.02 REMARK 500 8 VAL A 51 97.73 57.71 REMARK 500 8 THR A 52 34.27 -90.56 REMARK 500 8 SER A 53 78.26 49.71 REMARK 500 8 THR A 65 97.92 -67.00 REMARK 500 8 ARG A 66 80.75 62.44 REMARK 500 8 THR A 77 -42.54 -137.61 REMARK 500 9 GLN A 19 -77.41 -95.07 REMARK 500 9 HIS A 46 140.49 73.84 REMARK 500 REMARK 500 THIS ENTRY HAS 117 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 5 ARG A 72 0.08 SIDE CHAIN REMARK 500 14 ARG A 91 0.08 SIDE CHAIN REMARK 500 18 ARG A 66 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34640 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF HUMAN INTERLEUKIN-9 DBREF 7OX6 A 19 144 UNP P15248 IL9_HUMAN 19 144 SEQADV 7OX6 GLY A 15 UNP P15248 EXPRESSION TAG SEQADV 7OX6 SER A 16 UNP P15248 EXPRESSION TAG SEQADV 7OX6 HIS A 17 UNP P15248 EXPRESSION TAG SEQADV 7OX6 MET A 18 UNP P15248 EXPRESSION TAG SEQRES 1 A 130 GLY SER HIS MET GLN GLY CYS PRO THR LEU ALA GLY ILE SEQRES 2 A 130 LEU ASP ILE ASN PHE LEU ILE ASN LYS MET GLN GLU ASP SEQRES 3 A 130 PRO ALA SER LYS CYS HIS CYS SER ALA ASN VAL THR SER SEQRES 4 A 130 CYS LEU CYS LEU GLY ILE PRO SER ASP ASN CYS THR ARG SEQRES 5 A 130 PRO CYS PHE SER GLU ARG LEU SER GLN MET THR ASN THR SEQRES 6 A 130 THR MET GLN THR ARG TYR PRO LEU ILE PHE SER ARG VAL SEQRES 7 A 130 LYS LYS SER VAL GLU VAL LEU LYS ASN ASN LYS CYS PRO SEQRES 8 A 130 TYR PHE SER CYS GLU GLN PRO CYS ASN GLN THR THR ALA SEQRES 9 A 130 GLY ASN ALA LEU THR PHE LEU LYS SER LEU LEU GLU ILE SEQRES 10 A 130 PHE GLN LYS GLU LYS MET ARG GLY MET ARG GLY LYS ILE HELIX 1 AA1 LEU A 24 GLN A 38 1 15 HELIX 2 AA2 ASP A 40 CYS A 45 5 6 HELIX 3 AA3 PHE A 69 MET A 76 1 8 HELIX 4 AA4 THR A 79 TYR A 85 1 7 HELIX 5 AA5 TYR A 85 ASN A 102 1 18 HELIX 6 AA6 PHE A 107 GLN A 111 5 5 HELIX 7 AA7 ASN A 120 GLY A 142 1 23 SHEET 1 AA1 2 LEU A 57 PRO A 60 0 SHEET 2 AA1 2 THR A 116 GLY A 119 -1 O THR A 117 N ILE A 59 SSBOND 1 CYS A 21 CYS A 104 1555 1555 2.04 SSBOND 2 CYS A 45 CYS A 54 1555 1555 2.02 SSBOND 3 CYS A 47 CYS A 56 1555 1555 2.03 SSBOND 4 CYS A 64 CYS A 113 1555 1555 2.04 SSBOND 5 CYS A 68 CYS A 109 1555 1555 2.01 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1