HEADER UNKNOWN FUNCTION 22-JUN-21 7OXL TITLE CRYSTAL STRUCTURE OF HUMAN SPERMINE OXIDASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPERMINE OXIDASE,SPERMINE OXIDASE,SPERMINE OXIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FRAGMENT,FRAGMENT,FRAGMENT; COMPND 5 SYNONYM: POLYAMINE OXIDASE 1,PAO-1,PAOH1,POLYAMINE OXIDASE 1,PAO-1, COMPND 6 PAOH1,POLYAMINE OXIDASE 1,PAO-1,PAOH1; COMPND 7 EC: 1.5.3.16,1.5.3.16,1.5.3.16; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SMOX, C20ORF16, SMO, UNQ3039/PRO9854; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SPERMINE OXIDASE, POLYAMINE METABOLISM, SPERMINE, SPERMIDINE, UNKNOWN KEYWDS 2 FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR A.IMPAGLIAZZO,S.JOHANNSSON,M.THOMSEN,S.KRAPP REVDAT 3 13-NOV-24 7OXL 1 REMARK REVDAT 2 17-AUG-22 7OXL 1 JRNL REVDAT 1 13-JUL-22 7OXL 0 JRNL AUTH E.DIAZ,S.ADHIKARY,A.W.J.W.TEPPER,D.RILEY,R.ORTIZ-MEOZ, JRNL AUTH 2 D.KROSKY,C.BUYCK,C.M.LAMENCA,J.LLAVERIA,L.FANG,J.H.KALIN, JRNL AUTH 3 V.N.A.KLAREN,S.FAHMY,P.L.SHAFFER,R.KIRKPATRICK,R.J.CARBAJO, JRNL AUTH 4 M.THOMSEN,A.IMPAGLIAZZO JRNL TITL STRUCTURE OF HUMAN SPERMINE OXIDASE IN COMPLEX WITH A HIGHLY JRNL TITL 2 SELECTIVE ALLOSTERIC INHIBITOR. JRNL REF COMMUN BIOL V. 5 787 2022 JRNL REFN ESSN 2399-3642 JRNL PMID 35931745 JRNL DOI 10.1038/S42003-022-03735-9 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 165.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 79.1 REMARK 3 NUMBER OF REFLECTIONS : 27492 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.300 REMARK 3 FREE R VALUE TEST SET COUNT : 941 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.63 REMARK 3 REFLECTION IN BIN (WORKING SET) : 74 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3110 REMARK 3 BIN FREE R VALUE SET COUNT : 6 REMARK 3 BIN FREE R VALUE : 0.3860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3469 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 77 REMARK 3 SOLVENT ATOMS : 56 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.75000 REMARK 3 B22 (A**2) : -0.75000 REMARK 3 B33 (A**2) : 2.42000 REMARK 3 B12 (A**2) : -0.37000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.249 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.201 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.173 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.159 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3554 ; 0.004 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3295 ; 0.003 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4839 ; 1.358 ; 1.668 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7555 ; 1.107 ; 1.584 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 437 ; 6.179 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 176 ;30.073 ;21.420 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 542 ;13.853 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;14.786 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 460 ; 0.051 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4031 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 823 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 490 REMARK 3 RESIDUE RANGE : A 501 A 501 REMARK 3 ORIGIN FOR THE GROUP (A): -26.650 98.072 61.994 REMARK 3 T TENSOR REMARK 3 T11: 0.0965 T22: 0.2633 REMARK 3 T33: 0.0425 T12: -0.0893 REMARK 3 T13: 0.0070 T23: 0.0458 REMARK 3 L TENSOR REMARK 3 L11: 1.1893 L22: 4.4153 REMARK 3 L33: 1.4843 L12: 0.0212 REMARK 3 L13: -0.1129 L23: -0.2339 REMARK 3 S TENSOR REMARK 3 S11: 0.0344 S12: 0.0626 S13: 0.1221 REMARK 3 S21: -0.0826 S22: 0.0037 S23: -0.3083 REMARK 3 S31: -0.2950 S32: 0.0577 S33: -0.0381 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 7OXL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1292116509. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000010 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28433 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.395 REMARK 200 RESOLUTION RANGE LOW (A) : 165.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 79.1 REMARK 200 DATA REDUNDANCY : 11.80 REMARK 200 R MERGE (I) : 0.16700 REMARK 200 R SYM (I) : 0.16700 REMARK 200 FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 16.4 REMARK 200 DATA REDUNDANCY IN SHELL : 10.60 REMARK 200 R MERGE FOR SHELL (I) : 0.01800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 29.9999 %V/V MPD, 0.05 M MES, PH 5.50, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 130.72200 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 GLY A 2 REMARK 465 GLU A 81 REMARK 465 THR A 82 REMARK 465 THR A 83 REMARK 465 ASP A 84 REMARK 465 GLY A 85 REMARK 465 GLU A 86 REMARK 465 ARG A 87 REMARK 465 SER A 88 REMARK 465 VAL A 89 REMARK 465 GLY A 90 REMARK 465 ARG A 91 REMARK 465 ILE A 92 REMARK 465 SER A 93 REMARK 465 LEU A 94 REMARK 465 TYR A 95 REMARK 465 SER A 96 REMARK 465 LYS A 97 REMARK 465 ARG A 135 REMARK 465 HIS A 136 REMARK 465 ASP A 137 REMARK 465 LYS A 138 REMARK 465 PRO A 139 REMARK 465 SER A 191 REMARK 465 HIS A 192 REMARK 465 SER A 193 REMARK 465 MET A 194 REMARK 465 ASP A 195 REMARK 465 GLU A 196 REMARK 465 VAL A 197 REMARK 465 SER A 198 REMARK 465 LEU A 199 REMARK 465 SER A 200 REMARK 465 ALA A 201 REMARK 465 PHE A 202 REMARK 465 GLY A 203 REMARK 465 GLU A 204 REMARK 465 TRP A 205 REMARK 465 THR A 206 REMARK 465 GLU A 207 REMARK 465 ILE A 208 REMARK 465 PRO A 209 REMARK 465 GLY A 210 REMARK 465 SER A 250 REMARK 465 GLY A 251 REMARK 465 SER A 252 REMARK 465 GLY A 253 REMARK 465 ARG A 491 REMARK 465 PRO A 492 REMARK 465 ARG A 493 REMARK 465 LEU A 494 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 48 CE NZ REMARK 480 HIS A 51 CG ND1 CD2 CE1 NE2 REMARK 480 HIS A 65 CG ND1 CD2 CE1 NE2 REMARK 480 LEU A 72 CD1 CD2 REMARK 480 LYS A 113 CD CE NZ REMARK 480 GLU A 125 CG CD OE1 OE2 REMARK 480 GLN A 131 CD OE1 NE2 REMARK 480 GLU A 132 CG CD OE1 OE2 REMARK 480 VAL A 140 CG1 CG2 REMARK 480 GLU A 143 CD OE1 OE2 REMARK 480 GLN A 145 CD OE1 NE2 REMARK 480 ARG A 172 NE CZ NH1 NH2 REMARK 480 LEU A 173 CD1 CD2 REMARK 480 GLU A 185 CD OE1 OE2 REMARK 480 GLU A 188 CD OE1 OE2 REMARK 480 GLU A 318 CD OE1 OE2 REMARK 480 GLU A 386 CG CD OE1 OE2 REMARK 480 VAL A 431 CG1 CG2 REMARK 480 SER A 434 OG REMARK 480 GLU A 439 CD OE1 OE2 REMARK 480 GLN A 488 CG CD OE1 NE2 REMARK 480 GLN A 489 CD OE1 NE2 REMARK 480 SER A 490 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 12 44.81 -109.65 REMARK 500 SER A 64 147.32 75.31 REMARK 500 SER A 189 106.19 -179.05 REMARK 500 PRO A 291 -178.39 -69.38 REMARK 500 PHE A 422 -58.86 -134.48 REMARK 500 VAL A 431 86.21 -58.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 6YU A 501 DBREF 7OXL A 5 250 UNP Q9NWM0 SMOX_HUMAN 25 311 DBREF 7OXL A 256 446 UNP Q9NWM0 SMOX_HUMAN 312 512 DBREF 7OXL A 449 489 UNP Q9NWM0 SMOX_HUMAN 513 553 SEQADV 7OXL GLY A 1 UNP Q9NWM0 EXPRESSION TAG SEQADV 7OXL GLY A 2 UNP Q9NWM0 EXPRESSION TAG SEQADV 7OXL PRO A 3 UNP Q9NWM0 EXPRESSION TAG SEQADV 7OXL GLY A 4 UNP Q9NWM0 EXPRESSION TAG SEQADV 7OXL A UNP Q9NWM0 ALA 271 DELETION SEQADV 7OXL A UNP Q9NWM0 ARG 272 DELETION SEQADV 7OXL A UNP Q9NWM0 PRO 273 DELETION SEQADV 7OXL A UNP Q9NWM0 ARG 274 DELETION SEQADV 7OXL A UNP Q9NWM0 GLY 275 DELETION SEQADV 7OXL A UNP Q9NWM0 PRO 276 DELETION SEQADV 7OXL A UNP Q9NWM0 GLU 277 DELETION SEQADV 7OXL A UNP Q9NWM0 ILE 278 DELETION SEQADV 7OXL A UNP Q9NWM0 GLU 279 DELETION SEQADV 7OXL A UNP Q9NWM0 PRO 280 DELETION SEQADV 7OXL A UNP Q9NWM0 ARG 281 DELETION SEQADV 7OXL A UNP Q9NWM0 GLY 282 DELETION SEQADV 7OXL A UNP Q9NWM0 GLU 283 DELETION SEQADV 7OXL A UNP Q9NWM0 GLY 284 DELETION SEQADV 7OXL A UNP Q9NWM0 ASP 285 DELETION SEQADV 7OXL A UNP Q9NWM0 HIS 286 DELETION SEQADV 7OXL A UNP Q9NWM0 ASN 287 DELETION SEQADV 7OXL A UNP Q9NWM0 HIS 288 DELETION SEQADV 7OXL A UNP Q9NWM0 ASP 289 DELETION SEQADV 7OXL A UNP Q9NWM0 THR 290 DELETION SEQADV 7OXL A UNP Q9NWM0 GLY 291 DELETION SEQADV 7OXL A UNP Q9NWM0 GLU 292 DELETION SEQADV 7OXL A UNP Q9NWM0 GLY 293 DELETION SEQADV 7OXL A UNP Q9NWM0 GLY 294 DELETION SEQADV 7OXL A UNP Q9NWM0 GLN 295 DELETION SEQADV 7OXL A UNP Q9NWM0 GLY 296 DELETION SEQADV 7OXL A UNP Q9NWM0 GLY 297 DELETION SEQADV 7OXL A UNP Q9NWM0 GLU 298 DELETION SEQADV 7OXL A UNP Q9NWM0 GLU 299 DELETION SEQADV 7OXL A UNP Q9NWM0 PRO 300 DELETION SEQADV 7OXL A UNP Q9NWM0 ARG 301 DELETION SEQADV 7OXL A UNP Q9NWM0 GLY 302 DELETION SEQADV 7OXL A UNP Q9NWM0 GLY 303 DELETION SEQADV 7OXL A UNP Q9NWM0 ARG 304 DELETION SEQADV 7OXL A UNP Q9NWM0 TRP 305 DELETION SEQADV 7OXL A UNP Q9NWM0 ASP 306 DELETION SEQADV 7OXL A UNP Q9NWM0 GLU 307 DELETION SEQADV 7OXL A UNP Q9NWM0 ASP 308 DELETION SEQADV 7OXL A UNP Q9NWM0 GLU 309 DELETION SEQADV 7OXL A UNP Q9NWM0 GLN 310 DELETION SEQADV 7OXL A UNP Q9NWM0 TRP 311 DELETION SEQADV 7OXL GLY A 251 UNP Q9NWM0 LINKER SEQADV 7OXL SER A 252 UNP Q9NWM0 LINKER SEQADV 7OXL GLY A 253 UNP Q9NWM0 LINKER SEQADV 7OXL SER A 254 UNP Q9NWM0 LINKER SEQADV 7OXL GLY A 255 UNP Q9NWM0 LINKER SEQADV 7OXL THR A 382 UNP Q9NWM0 LYS 438 CONFLICT SEQADV 7OXL LEU A 383 UNP Q9NWM0 CYS 439 CONFLICT SEQADV 7OXL SER A 384 UNP Q9NWM0 ASP 440 CONFLICT SEQADV 7OXL A UNP Q9NWM0 TYR 503 DELETION SEQADV 7OXL A UNP Q9NWM0 THR 504 DELETION SEQADV 7OXL A UNP Q9NWM0 GLU 505 DELETION SEQADV 7OXL A UNP Q9NWM0 SER 506 DELETION SEQADV 7OXL A UNP Q9NWM0 SER 507 DELETION SEQADV 7OXL A UNP Q9NWM0 LYS 508 DELETION SEQADV 7OXL A UNP Q9NWM0 THR 509 DELETION SEQADV 7OXL A UNP Q9NWM0 ALA 510 DELETION SEQADV 7OXL A UNP Q9NWM0 PRO 511 DELETION SEQADV 7OXL A UNP Q9NWM0 MET 512 DELETION SEQADV 7OXL GLY A 447 UNP Q9NWM0 LINKER SEQADV 7OXL LEU A 448 UNP Q9NWM0 LINKER SEQADV 7OXL SER A 490 UNP Q9NWM0 EXPRESSION TAG SEQADV 7OXL ARG A 491 UNP Q9NWM0 EXPRESSION TAG SEQADV 7OXL PRO A 492 UNP Q9NWM0 EXPRESSION TAG SEQADV 7OXL ARG A 493 UNP Q9NWM0 EXPRESSION TAG SEQADV 7OXL LEU A 494 UNP Q9NWM0 EXPRESSION TAG SEQRES 1 A 494 GLY GLY PRO GLY PRO ARG VAL VAL VAL ILE GLY ALA GLY SEQRES 2 A 494 LEU ALA GLY LEU ALA ALA ALA LYS ALA LEU LEU GLU GLN SEQRES 3 A 494 GLY PHE THR ASP VAL THR VAL LEU GLU ALA SER SER HIS SEQRES 4 A 494 ILE GLY GLY ARG VAL GLN SER VAL LYS LEU GLY HIS ALA SEQRES 5 A 494 THR PHE GLU LEU GLY ALA THR TRP ILE HIS GLY SER HIS SEQRES 6 A 494 GLY ASN PRO ILE TYR HIS LEU ALA GLU ALA ASN GLY LEU SEQRES 7 A 494 LEU GLU GLU THR THR ASP GLY GLU ARG SER VAL GLY ARG SEQRES 8 A 494 ILE SER LEU TYR SER LYS ASN GLY VAL ALA CYS TYR LEU SEQRES 9 A 494 THR ASN HIS GLY ARG ARG ILE PRO LYS ASP VAL VAL GLU SEQRES 10 A 494 GLU PHE SER ASP LEU TYR ASN GLU VAL TYR ASN LEU THR SEQRES 11 A 494 GLN GLU PHE PHE ARG HIS ASP LYS PRO VAL ASN ALA GLU SEQRES 12 A 494 SER GLN ASN SER VAL GLY VAL PHE THR ARG GLU GLU VAL SEQRES 13 A 494 ARG ASN ARG ILE ARG ASN ASP PRO ASP ASP PRO GLU ALA SEQRES 14 A 494 THR LYS ARG LEU LYS LEU ALA MET ILE GLN GLN TYR LEU SEQRES 15 A 494 LYS VAL GLU SER CYS GLU SER SER SER HIS SER MET ASP SEQRES 16 A 494 GLU VAL SER LEU SER ALA PHE GLY GLU TRP THR GLU ILE SEQRES 17 A 494 PRO GLY ALA HIS HIS ILE ILE PRO SER GLY PHE MET ARG SEQRES 18 A 494 VAL VAL GLU LEU LEU ALA GLU GLY ILE PRO ALA HIS VAL SEQRES 19 A 494 ILE GLN LEU GLY LYS PRO VAL ARG CYS ILE HIS TRP ASP SEQRES 20 A 494 GLN ALA SER GLY SER GLY SER GLY SER VAL VAL VAL GLU SEQRES 21 A 494 CYS GLU ASP CYS GLU LEU ILE PRO ALA ASP HIS VAL ILE SEQRES 22 A 494 VAL THR VAL SER LEU GLY VAL LEU LYS ARG GLN TYR THR SEQRES 23 A 494 SER PHE PHE ARG PRO GLY LEU PRO THR GLU LYS VAL ALA SEQRES 24 A 494 ALA ILE HIS ARG LEU GLY ILE GLY THR THR ASP LYS ILE SEQRES 25 A 494 PHE LEU GLU PHE GLU GLU PRO PHE TRP GLY PRO GLU CYS SEQRES 26 A 494 ASN SER LEU GLN PHE VAL TRP GLU ASP GLU ALA GLU SER SEQRES 27 A 494 HIS THR LEU THR TYR PRO PRO GLU LEU TRP TYR ARG LYS SEQRES 28 A 494 ILE CYS GLY PHE ASP VAL LEU TYR PRO PRO GLU ARG TYR SEQRES 29 A 494 GLY HIS VAL LEU SER GLY TRP ILE CYS GLY GLU GLU ALA SEQRES 30 A 494 LEU VAL MET GLU THR LEU SER ASP GLU ALA VAL ALA GLU SEQRES 31 A 494 ILE CYS THR GLU MET LEU ARG GLN PHE THR GLY ASN PRO SEQRES 32 A 494 ASN ILE PRO LYS PRO ARG ARG ILE LEU ARG SER ALA TRP SEQRES 33 A 494 GLY SER ASN PRO TYR PHE ARG GLY SER TYR SER TYR THR SEQRES 34 A 494 GLN VAL GLY SER SER GLY ALA ASP VAL GLU LYS LEU ALA SEQRES 35 A 494 LYS PRO LEU PRO GLY LEU GLN VAL LEU PHE SER GLY GLU SEQRES 36 A 494 ALA THR HIS ARG LYS TYR TYR SER THR THR HIS GLY ALA SEQRES 37 A 494 LEU LEU SER GLY GLN ARG GLU ALA ALA ARG LEU ILE GLU SEQRES 38 A 494 MET TYR ARG ASP LEU PHE GLN GLN SER ARG PRO ARG LEU HET 6YU A 501 67 HET CL A 502 1 HET MPD A 503 8 HET CL A 504 1 HETNAM 6YU FAD-MDL72527 ADDUCT HETNAM CL CHLORIDE ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 2 6YU C39 H53 N11 O15 P2 FORMUL 3 CL 2(CL 1-) FORMUL 4 MPD C6 H14 O2 FORMUL 6 HOH *56(H2 O) HELIX 1 AA1 GLY A 13 GLN A 26 1 14 HELIX 2 AA2 ASN A 67 ASN A 76 1 10 HELIX 3 AA3 PRO A 112 PHE A 134 1 23 HELIX 4 AA4 ASN A 141 ASP A 163 1 23 HELIX 5 AA5 PRO A 167 GLU A 188 1 22 HELIX 6 AA6 PHE A 219 GLY A 229 1 11 HELIX 7 AA7 PRO A 231 HIS A 233 5 3 HELIX 8 AA8 SER A 277 PHE A 288 1 12 HELIX 9 AA9 PRO A 294 LEU A 304 1 11 HELIX 10 AB1 TRP A 332 ALA A 336 5 5 HELIX 11 AB2 PRO A 344 ILE A 352 5 9 HELIX 12 AB3 PRO A 360 GLY A 365 1 6 HELIX 13 AB4 GLY A 374 LEU A 383 1 10 HELIX 14 AB5 SER A 384 GLY A 401 1 18 HELIX 15 AB6 SER A 434 LYS A 443 1 10 HELIX 16 AB7 LEU A 445 LEU A 448 5 4 HELIX 17 AB8 GLY A 454 HIS A 458 5 5 HELIX 18 AB9 THR A 464 SER A 490 1 27 SHEET 1 AA1 5 ILE A 235 GLN A 236 0 SHEET 2 AA1 5 VAL A 31 LEU A 34 1 N VAL A 33 O GLN A 236 SHEET 3 AA1 5 VAL A 7 ILE A 10 1 N VAL A 9 O LEU A 34 SHEET 4 AA1 5 HIS A 271 VAL A 274 1 O ILE A 273 N ILE A 10 SHEET 5 AA1 5 VAL A 450 PHE A 452 1 O LEU A 451 N VAL A 272 SHEET 1 AA2 2 SER A 46 LEU A 49 0 SHEET 2 AA2 2 ALA A 52 GLU A 55 -1 O PHE A 54 N VAL A 47 SHEET 1 AA3 6 VAL A 100 THR A 105 0 SHEET 2 AA3 6 CYS A 325 VAL A 331 1 O ASN A 326 N VAL A 100 SHEET 3 AA3 6 GLY A 354 VAL A 357 -1 O VAL A 357 N ASN A 326 SHEET 4 AA3 6 HIS A 366 CYS A 373 -1 O SER A 369 N ASP A 356 SHEET 5 AA3 6 THR A 309 PHE A 316 -1 N ILE A 312 O GLY A 370 SHEET 6 AA3 6 ARG A 410 ARG A 413 -1 O LEU A 412 N PHE A 313 SHEET 1 AA4 4 LEU A 266 ALA A 269 0 SHEET 2 AA4 4 VAL A 257 CYS A 261 -1 N VAL A 257 O ALA A 269 SHEET 3 AA4 4 VAL A 241 HIS A 245 -1 N CYS A 243 O GLU A 260 SHEET 4 AA4 4 PHE A 289 ARG A 290 1 O ARG A 290 N ILE A 244 SHEET 1 AA5 2 GLY A 305 GLY A 307 0 SHEET 2 AA5 2 TYR A 426 TYR A 428 -1 O TYR A 428 N GLY A 305 SSBOND 1 CYS A 102 CYS A 325 1555 1555 2.03 SSBOND 2 CYS A 187 CYS A 373 1555 1555 2.04 CISPEP 1 ARG A 290 PRO A 291 0 -2.10 CISPEP 2 TYR A 359 PRO A 360 0 -3.56 CRYST1 190.919 190.919 43.574 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005238 0.003024 0.000000 0.00000 SCALE2 0.000000 0.006048 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022949 0.00000