HEADER TRANSPORT PROTEIN 25-JUN-21 7OYV TITLE E.COLI'S PUTRESCINE RECEPTOR VARIANT POTF/D (4JDF) WITH MUTATIONS E39D TITLE 2 F88A S247D IN COMPLEX WITH SPERMIDINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTRESCINE-BINDING PERIPLASMIC PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: POTF, HPE39_07830, WP7S17E04_28980; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET21B(+) KEYWDS E.COLI, PERIPLASMIC BINDING PROTEIN, POTF, SPERMIDINE, TRANSPORT KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.SHANMUGARATNAM,P.KROEGER,B.HOCKER REVDAT 3 31-JAN-24 7OYV 1 REMARK REVDAT 2 22-DEC-21 7OYV 1 JRNL REVDAT 1 01-DEC-21 7OYV 0 JRNL AUTH P.KROGER,S.SHANMUGARATNAM,U.SCHEIB,B.HOCKER JRNL TITL FINE-TUNING SPERMIDINE BINDING MODES IN THE PUTRESCINE JRNL TITL 2 BINDING PROTEIN POTF. JRNL REF J.BIOL.CHEM. V. 297 01419 2021 JRNL REFN ESSN 1083-351X JRNL PMID 34801550 JRNL DOI 10.1016/J.JBC.2021.101419 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.9 REMARK 3 NUMBER OF REFLECTIONS : 62236 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.380 REMARK 3 FREE R VALUE TEST SET COUNT : 2101 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.5800 - 4.6700 1.00 4633 162 0.1967 0.2372 REMARK 3 2 4.6700 - 3.7100 1.00 4455 156 0.1789 0.2369 REMARK 3 3 3.7100 - 3.2400 0.98 4360 152 0.2062 0.2440 REMARK 3 4 3.2400 - 2.9500 0.96 4275 149 0.2307 0.2987 REMARK 3 5 2.9500 - 2.7300 0.96 4218 148 0.2446 0.2701 REMARK 3 6 2.7300 - 2.5700 0.92 4073 142 0.2435 0.3178 REMARK 3 7 2.5700 - 2.4400 0.92 4049 141 0.2438 0.2805 REMARK 3 8 2.4400 - 2.3400 0.92 4014 141 0.2437 0.2742 REMARK 3 9 2.3400 - 2.2500 0.89 3910 136 0.2563 0.3173 REMARK 3 10 2.2500 - 2.1700 0.86 3742 131 0.2842 0.3540 REMARK 3 11 2.1700 - 2.1000 0.87 3792 132 0.2992 0.3334 REMARK 3 12 2.1000 - 2.0400 0.87 3770 132 0.2944 0.3648 REMARK 3 13 2.0400 - 1.9900 0.86 3786 132 0.3139 0.3439 REMARK 3 14 1.9900 - 1.9400 0.87 3769 132 0.3506 0.3970 REMARK 3 15 1.9400 - 1.9000 0.75 3280 115 0.4334 0.4734 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.318 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.069 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.11 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5657 REMARK 3 ANGLE : 0.863 7696 REMARK 3 CHIRALITY : 0.053 848 REMARK 3 PLANARITY : 0.007 991 REMARK 3 DIHEDRAL : 17.281 2091 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 29 THROUGH 369) REMARK 3 ORIGIN FOR THE GROUP (A): -17.4883 11.1740 -22.5045 REMARK 3 T TENSOR REMARK 3 T11: 0.2048 T22: 0.2537 REMARK 3 T33: 0.2502 T12: 0.0555 REMARK 3 T13: 0.0151 T23: -0.0418 REMARK 3 L TENSOR REMARK 3 L11: 1.2391 L22: 1.7766 REMARK 3 L33: 1.4503 L12: 0.4292 REMARK 3 L13: 0.4822 L23: 0.3506 REMARK 3 S TENSOR REMARK 3 S11: -0.0801 S12: -0.0905 S13: -0.0753 REMARK 3 S21: 0.0597 S22: -0.0055 S23: 0.1495 REMARK 3 S31: 0.0944 S32: -0.1131 S33: -0.0028 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 29 THROUGH 369) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3653 1.2550 -21.1341 REMARK 3 T TENSOR REMARK 3 T11: 0.2314 T22: 0.2738 REMARK 3 T33: 0.2305 T12: 0.0449 REMARK 3 T13: -0.0493 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 1.0203 L22: 1.5806 REMARK 3 L33: 1.1502 L12: -0.0247 REMARK 3 L13: -0.3709 L23: -0.0644 REMARK 3 S TENSOR REMARK 3 S11: -0.0879 S12: -0.0404 S13: 0.0479 REMARK 3 S21: 0.0062 S22: 0.0248 S23: -0.0132 REMARK 3 S31: 0.0325 S32: 0.0699 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 29 through 63 or REMARK 3 resid 65 through 75 or resid 77 through REMARK 3 107 or resid 109 through 130 or resid 132 REMARK 3 through 174 or resid 176 through 227 or REMARK 3 resid 229 through 238 or resid 240 REMARK 3 through 273 or resid 275 through 351 or REMARK 3 resid 353 through 356 or resid 358 REMARK 3 through 367 or resid 369 or resid 801 REMARK 3 through 903)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 29 through 63 or REMARK 3 resid 65 through 75 or resid 77 through REMARK 3 107 or resid 109 through 130 or resid 132 REMARK 3 through 174 or resid 176 through 227 or REMARK 3 resid 229 through 238 or resid 240 REMARK 3 through 273 or resid 275 through 351 or REMARK 3 resid 353 through 356 or resid 358 REMARK 3 through 367 or resid 369 or resid 701 REMARK 3 through 803)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7OYV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1292116638. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : DCM SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 20190806 REMARK 200 DATA SCALING SOFTWARE : XSCALE 20190806 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62244 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 47.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.9 REMARK 200 DATA REDUNDANCY : 9.500 REMARK 200 R MERGE (I) : 0.12100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.5 REMARK 200 DATA REDUNDANCY IN SHELL : 7.60 REMARK 200 R MERGE FOR SHELL (I) : 2.00300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 1A99 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4 M AMSO4 + 0.1 M BICINE PH 8.3 + REMARK 280 4.5% JEFFAMINE M600, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 95.16000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 95.16000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.80650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.28800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.80650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.28800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 95.16000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.80650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.28800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 95.16000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.80650 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 61.28800 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 712 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 27 REMARK 465 GLU A 28 REMARK 465 LYS A 370 REMARK 465 LEU A 371 REMARK 465 GLU A 372 REMARK 465 HIS A 373 REMARK 465 HIS A 374 REMARK 465 HIS A 375 REMARK 465 HIS A 376 REMARK 465 HIS A 377 REMARK 465 HIS A 378 REMARK 465 ALA B 27 REMARK 465 GLU B 28 REMARK 465 LYS B 370 REMARK 465 LEU B 371 REMARK 465 GLU B 372 REMARK 465 HIS B 373 REMARK 465 HIS B 374 REMARK 465 HIS B 375 REMARK 465 HIS B 376 REMARK 465 HIS B 377 REMARK 465 HIS B 378 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 167 O HOH A 601 2.01 REMARK 500 OD2 ASP B 237 O HOH B 601 2.09 REMARK 500 O HOH A 704 O HOH B 615 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 175 CA - CB - SG ANGL. DEV. = 7.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 133 -69.49 -105.16 REMARK 500 ALA A 136 -163.74 -162.53 REMARK 500 TRP A 160 -9.80 -59.34 REMARK 500 ASN A 199 47.48 -106.34 REMARK 500 SER A 227 -32.54 -147.88 REMARK 500 ASN A 288 76.23 -112.69 REMARK 500 TYR A 336 75.84 -109.10 REMARK 500 ASP B 126 10.66 59.30 REMARK 500 TYR B 133 -71.09 -111.67 REMARK 500 ALA B 136 -163.23 -164.31 REMARK 500 ASN B 199 45.40 -105.69 REMARK 500 SER B 227 -28.02 -150.67 REMARK 500 ASN B 288 76.23 -114.55 REMARK 500 TYR B 336 76.68 -109.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 712 DISTANCE = 7.01 ANGSTROMS REMARK 525 HOH B 712 DISTANCE = 8.22 ANGSTROMS DBREF1 7OYV A 27 370 UNP A0A6S5NLK9_ECOLX DBREF2 7OYV A A0A6S5NLK9 10 353 DBREF1 7OYV B 27 370 UNP A0A6S5NLK9_ECOLX DBREF2 7OYV B A0A6S5NLK9 10 353 SEQADV 7OYV THR A 38 UNP A0A6S5NLK SER 21 ENGINEERED MUTATION SEQADV 7OYV TYR A 87 UNP A0A6S5NLK SER 70 ENGINEERED MUTATION SEQADV 7OYV ALA A 88 UNP A0A6S5NLK PHE 71 ENGINEERED MUTATION SEQADV 7OYV ASP A 182 UNP A0A6S5NLK ALA 165 ENGINEERED MUTATION SEQADV 7OYV TRP A 276 UNP A0A6S5NLK PHE 259 ENGINEERED MUTATION SEQADV 7OYV GLN A 348 UNP A0A6S5NLK LEU 331 ENGINEERED MUTATION SEQADV 7OYV LEU A 371 UNP A0A6S5NLK EXPRESSION TAG SEQADV 7OYV GLU A 372 UNP A0A6S5NLK EXPRESSION TAG SEQADV 7OYV HIS A 373 UNP A0A6S5NLK EXPRESSION TAG SEQADV 7OYV HIS A 374 UNP A0A6S5NLK EXPRESSION TAG SEQADV 7OYV HIS A 375 UNP A0A6S5NLK EXPRESSION TAG SEQADV 7OYV HIS A 376 UNP A0A6S5NLK EXPRESSION TAG SEQADV 7OYV HIS A 377 UNP A0A6S5NLK EXPRESSION TAG SEQADV 7OYV HIS A 378 UNP A0A6S5NLK EXPRESSION TAG SEQADV 7OYV THR B 38 UNP A0A6S5NLK SER 21 ENGINEERED MUTATION SEQADV 7OYV TYR B 87 UNP A0A6S5NLK SER 70 ENGINEERED MUTATION SEQADV 7OYV ALA B 88 UNP A0A6S5NLK PHE 71 ENGINEERED MUTATION SEQADV 7OYV ASP B 182 UNP A0A6S5NLK ALA 165 ENGINEERED MUTATION SEQADV 7OYV TRP B 276 UNP A0A6S5NLK PHE 259 ENGINEERED MUTATION SEQADV 7OYV GLN B 348 UNP A0A6S5NLK LEU 331 ENGINEERED MUTATION SEQADV 7OYV LEU B 371 UNP A0A6S5NLK EXPRESSION TAG SEQADV 7OYV GLU B 372 UNP A0A6S5NLK EXPRESSION TAG SEQADV 7OYV HIS B 373 UNP A0A6S5NLK EXPRESSION TAG SEQADV 7OYV HIS B 374 UNP A0A6S5NLK EXPRESSION TAG SEQADV 7OYV HIS B 375 UNP A0A6S5NLK EXPRESSION TAG SEQADV 7OYV HIS B 376 UNP A0A6S5NLK EXPRESSION TAG SEQADV 7OYV HIS B 377 UNP A0A6S5NLK EXPRESSION TAG SEQADV 7OYV HIS B 378 UNP A0A6S5NLK EXPRESSION TAG SEQRES 1 A 352 ALA GLU GLN LYS THR LEU HIS ILE TYR ASN TRP THR ASP SEQRES 2 A 352 TYR ILE ALA PRO ASP THR VAL ALA ASN PHE GLU LYS GLU SEQRES 3 A 352 THR GLY ILE LYS VAL VAL TYR ASP VAL PHE ASP SER ASN SEQRES 4 A 352 GLU VAL LEU GLU GLY LYS LEU MET ALA GLY SER THR GLY SEQRES 5 A 352 PHE ASP LEU VAL VAL PRO SER ALA TYR ALA LEU GLU ARG SEQRES 6 A 352 GLN LEU THR ALA GLY VAL PHE GLN PRO LEU ASP LYS SER SEQRES 7 A 352 LYS LEU PRO GLU TRP LYS ASN LEU ASP PRO GLU LEU LEU SEQRES 8 A 352 LYS LEU VAL ALA LYS HIS ASP PRO ASP ASN LYS PHE ALA SEQRES 9 A 352 MET PRO TYR MET TRP ALA THR THR GLY ILE GLY TYR ASN SEQRES 10 A 352 VAL ASP LYS VAL LYS ALA VAL LEU GLY GLU ASN ALA PRO SEQRES 11 A 352 VAL ASP SER TRP ASP LEU ILE LEU LYS PRO GLU ASN LEU SEQRES 12 A 352 GLU LYS LEU LYS SER CYS GLY VAL SER PHE LEU ASP ASP SEQRES 13 A 352 PRO GLU GLU VAL PHE ALA THR VAL LEU ASN TYR LEU GLY SEQRES 14 A 352 LYS ASP PRO ASN SER THR LYS ALA ASP ASP TYR THR GLY SEQRES 15 A 352 PRO ALA THR ASP LEU LEU LEU LYS LEU ARG PRO ASN ILE SEQRES 16 A 352 ARG TYR PHE HIS SER SER GLN TYR ILE ASN ASP LEU ALA SEQRES 17 A 352 ASN GLY ASP ILE CYS VAL ALA ILE GLY TRP ALA GLY ASP SEQRES 18 A 352 VAL TRP GLN ALA SER ASN ARG ALA LYS GLU ALA LYS ASN SEQRES 19 A 352 GLY VAL ASN VAL SER PHE SER ILE PRO LYS GLU GLY ALA SEQRES 20 A 352 MET ALA TRP PHE ASP VAL PHE ALA MET PRO ALA ASP ALA SEQRES 21 A 352 LYS ASN LYS ASP GLU ALA TYR GLN PHE LEU ASN TYR LEU SEQRES 22 A 352 LEU ARG PRO ASP VAL VAL ALA HIS ILE SER ASP HIS VAL SEQRES 23 A 352 PHE TYR ALA ASN ALA ASN LYS ALA ALA THR PRO LEU VAL SEQRES 24 A 352 SER ALA GLU VAL ARG GLU ASN PRO GLY ILE TYR PRO PRO SEQRES 25 A 352 ALA ASP VAL ARG ALA LYS LEU PHE THR GLN LYS VAL GLN SEQRES 26 A 352 ASP PRO LYS ILE ASP ARG VAL ARG THR ARG ALA TRP THR SEQRES 27 A 352 LYS VAL LYS SER GLY LYS LEU GLU HIS HIS HIS HIS HIS SEQRES 28 A 352 HIS SEQRES 1 B 352 ALA GLU GLN LYS THR LEU HIS ILE TYR ASN TRP THR ASP SEQRES 2 B 352 TYR ILE ALA PRO ASP THR VAL ALA ASN PHE GLU LYS GLU SEQRES 3 B 352 THR GLY ILE LYS VAL VAL TYR ASP VAL PHE ASP SER ASN SEQRES 4 B 352 GLU VAL LEU GLU GLY LYS LEU MET ALA GLY SER THR GLY SEQRES 5 B 352 PHE ASP LEU VAL VAL PRO SER ALA TYR ALA LEU GLU ARG SEQRES 6 B 352 GLN LEU THR ALA GLY VAL PHE GLN PRO LEU ASP LYS SER SEQRES 7 B 352 LYS LEU PRO GLU TRP LYS ASN LEU ASP PRO GLU LEU LEU SEQRES 8 B 352 LYS LEU VAL ALA LYS HIS ASP PRO ASP ASN LYS PHE ALA SEQRES 9 B 352 MET PRO TYR MET TRP ALA THR THR GLY ILE GLY TYR ASN SEQRES 10 B 352 VAL ASP LYS VAL LYS ALA VAL LEU GLY GLU ASN ALA PRO SEQRES 11 B 352 VAL ASP SER TRP ASP LEU ILE LEU LYS PRO GLU ASN LEU SEQRES 12 B 352 GLU LYS LEU LYS SER CYS GLY VAL SER PHE LEU ASP ASP SEQRES 13 B 352 PRO GLU GLU VAL PHE ALA THR VAL LEU ASN TYR LEU GLY SEQRES 14 B 352 LYS ASP PRO ASN SER THR LYS ALA ASP ASP TYR THR GLY SEQRES 15 B 352 PRO ALA THR ASP LEU LEU LEU LYS LEU ARG PRO ASN ILE SEQRES 16 B 352 ARG TYR PHE HIS SER SER GLN TYR ILE ASN ASP LEU ALA SEQRES 17 B 352 ASN GLY ASP ILE CYS VAL ALA ILE GLY TRP ALA GLY ASP SEQRES 18 B 352 VAL TRP GLN ALA SER ASN ARG ALA LYS GLU ALA LYS ASN SEQRES 19 B 352 GLY VAL ASN VAL SER PHE SER ILE PRO LYS GLU GLY ALA SEQRES 20 B 352 MET ALA TRP PHE ASP VAL PHE ALA MET PRO ALA ASP ALA SEQRES 21 B 352 LYS ASN LYS ASP GLU ALA TYR GLN PHE LEU ASN TYR LEU SEQRES 22 B 352 LEU ARG PRO ASP VAL VAL ALA HIS ILE SER ASP HIS VAL SEQRES 23 B 352 PHE TYR ALA ASN ALA ASN LYS ALA ALA THR PRO LEU VAL SEQRES 24 B 352 SER ALA GLU VAL ARG GLU ASN PRO GLY ILE TYR PRO PRO SEQRES 25 B 352 ALA ASP VAL ARG ALA LYS LEU PHE THR GLN LYS VAL GLN SEQRES 26 B 352 ASP PRO LYS ILE ASP ARG VAL ARG THR ARG ALA TRP THR SEQRES 27 B 352 LYS VAL LYS SER GLY LYS LEU GLU HIS HIS HIS HIS HIS SEQRES 28 B 352 HIS HET 3IZ A 501 17 HET JFN A 502 6 HET JFN A 503 6 HET SPD A 504 10 HET 3IE A 505 6 HET 3IE A 506 6 HET CL A 507 1 HET JFN B 501 6 HET JFN B 502 6 HET JFN B 503 6 HET SPD B 504 10 HET 3IE B 505 6 HET CL B 506 1 HETNAM 3IZ (2~{R})-1-[(2~{R})-1-[(2~{R})-1-(2-METHOXYETHOXY) HETNAM 2 3IZ PROPAN-2-YL]OXYPROPAN-2-YL]OXYPROPAN-2-AMINE HETNAM JFN (2R)-1-METHOXYPROPAN-2-AMINE HETNAM SPD SPERMIDINE HETNAM 3IE (2~{S})-1-METHOXYPROPAN-2-AMINE HETNAM CL CHLORIDE ION HETSYN JFN JEFFAMINE HETSYN SPD N-(2-AMINO-PROPYL)-1,4-DIAMINOBUTANE; PA(34) FORMUL 3 3IZ C12 H27 N O4 FORMUL 4 JFN 5(C4 H11 N O) FORMUL 6 SPD 2(C7 H19 N3) FORMUL 7 3IE 3(C4 H11 N O) FORMUL 9 CL 2(CL 1-) FORMUL 16 HOH *224(H2 O) HELIX 1 AA1 ASP A 44 GLY A 54 1 11 HELIX 2 AA2 SER A 64 GLY A 75 1 12 HELIX 3 AA3 SER A 85 THR A 94 1 10 HELIX 4 AA4 ASP A 102 LEU A 112 5 11 HELIX 5 AA5 ASP A 113 LYS A 122 1 10 HELIX 6 AA6 HIS A 123 LYS A 128 5 6 HELIX 7 AA7 VAL A 144 GLY A 152 1 9 HELIX 8 AA8 TRP A 160 LYS A 165 1 6 HELIX 9 AA9 LYS A 165 LYS A 173 1 9 HELIX 10 AB1 ASP A 182 LEU A 194 1 13 HELIX 11 AB2 LYS A 202 GLY A 208 1 7 HELIX 12 AB3 GLY A 208 ARG A 218 1 11 HELIX 13 AB4 PRO A 219 ILE A 221 5 3 HELIX 14 AB5 GLN A 228 ASN A 235 1 8 HELIX 15 AB6 ALA A 245 LYS A 259 1 15 HELIX 16 AB7 ASN A 288 ARG A 301 1 14 HELIX 17 AB8 ARG A 301 PHE A 313 1 13 HELIX 18 AB9 ALA A 321 VAL A 325 5 5 HELIX 19 AC1 SER A 326 GLU A 331 1 6 HELIX 20 AC2 PRO A 338 ALA A 343 1 6 HELIX 21 AC3 ASP A 352 SER A 368 1 17 HELIX 22 AC4 ASP B 44 GLY B 54 1 11 HELIX 23 AC5 SER B 64 GLY B 75 1 12 HELIX 24 AC6 SER B 85 THR B 94 1 10 HELIX 25 AC7 ASP B 102 LEU B 112 5 11 HELIX 26 AC8 ASP B 113 LYS B 122 1 10 HELIX 27 AC9 HIS B 123 LYS B 128 5 6 HELIX 28 AD1 VAL B 144 GLY B 152 1 9 HELIX 29 AD2 TRP B 160 LYS B 165 1 6 HELIX 30 AD3 LYS B 165 LYS B 173 1 9 HELIX 31 AD4 ASP B 182 LEU B 194 1 13 HELIX 32 AD5 LYS B 202 GLY B 208 1 7 HELIX 33 AD6 GLY B 208 ARG B 218 1 11 HELIX 34 AD7 PRO B 219 ILE B 221 5 3 HELIX 35 AD8 GLN B 228 ASN B 235 1 8 HELIX 36 AD9 ALA B 245 LYS B 259 1 15 HELIX 37 AE1 ASN B 288 LEU B 300 1 13 HELIX 38 AE2 ARG B 301 PHE B 313 1 13 HELIX 39 AE3 ALA B 321 VAL B 325 5 5 HELIX 40 AE4 SER B 326 GLU B 331 1 6 HELIX 41 AE5 PRO B 338 ALA B 343 1 6 HELIX 42 AE6 ASP B 352 GLY B 369 1 18 SHEET 1 AA1 3 LYS A 56 PHE A 62 0 SHEET 2 AA1 3 THR A 31 TRP A 37 1 N LEU A 32 O LYS A 56 SHEET 3 AA1 3 LEU A 81 VAL A 82 1 O LEU A 81 N TYR A 35 SHEET 1 AA2 5 TYR A 223 PHE A 224 0 SHEET 2 AA2 5 VAL A 177 PHE A 179 1 N PHE A 179 O TYR A 223 SHEET 3 AA2 5 VAL A 240 TRP A 244 1 O ILE A 242 N SER A 178 SHEET 4 AA2 5 ALA A 130 ASN A 143 -1 N GLY A 141 O ALA A 241 SHEET 5 AA2 5 ALA A 315 ASN A 316 -1 O ALA A 315 N TRP A 135 SHEET 1 AA3 4 VAL A 264 SER A 267 0 SHEET 2 AA3 4 ALA A 130 ASN A 143 -1 N ILE A 140 O SER A 267 SHEET 3 AA3 4 ALA A 273 ALA A 281 -1 O ASP A 278 N TYR A 133 SHEET 4 AA3 4 LEU A 345 PHE A 346 1 O PHE A 346 N ALA A 275 SHEET 1 AA4 3 LYS B 56 PHE B 62 0 SHEET 2 AA4 3 THR B 31 TRP B 37 1 N ILE B 34 O ASP B 60 SHEET 3 AA4 3 LEU B 81 VAL B 82 1 O LEU B 81 N TYR B 35 SHEET 1 AA5 5 TYR B 223 PHE B 224 0 SHEET 2 AA5 5 VAL B 177 PHE B 179 1 N PHE B 179 O TYR B 223 SHEET 3 AA5 5 VAL B 240 TRP B 244 1 O ILE B 242 N SER B 178 SHEET 4 AA5 5 ALA B 130 ASN B 143 -1 N GLY B 141 O ALA B 241 SHEET 5 AA5 5 ALA B 315 ASN B 316 -1 O ALA B 315 N TRP B 135 SHEET 1 AA6 4 VAL B 264 SER B 267 0 SHEET 2 AA6 4 ALA B 130 ASN B 143 -1 N TYR B 142 O SER B 265 SHEET 3 AA6 4 ALA B 273 ALA B 281 -1 O PHE B 280 N MET B 131 SHEET 4 AA6 4 LEU B 345 THR B 347 1 O PHE B 346 N ALA B 275 SSBOND 1 CYS A 175 CYS A 239 1555 1555 2.04 SSBOND 2 CYS B 175 CYS B 239 1555 1555 2.04 CRYST1 73.613 122.576 190.320 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013585 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008158 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005254 0.00000 MTRIX1 1 -0.992091 0.007732 -0.125286 -5.95501 1 MTRIX2 1 -0.002081 -0.998977 -0.045171 11.27187 1 MTRIX3 1 -0.125507 -0.044553 0.991092 -0.56564 1