HEADER SPLICING 29-JUN-21 7P08 TITLE SOLUTION STRUCTURE OF THE HUMAN SF3A1 UBIQUITIN-LIKE DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOFORM 1 OF SPLICING FACTOR 3A SUBUNIT 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SF3A120,SPLICEOSOME-ASSOCIATED PROTEIN 114,SAP 114; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SF3A1, SAP114; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 CODON+; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET24B KEYWDS SPLICEOSOME, U2 SNRNP, SF3A, UBIQUTIN-LIKE DOMAIN, SPLICING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.DE VRIES,S.CAMPAGNE,F.H.T.ALLAIN REVDAT 2 16-FEB-22 7P08 1 JRNL REVDAT 1 09-FEB-22 7P08 0 JRNL AUTH T.DE VRIES,W.MARTELLY,S.CAMPAGNE,K.SABATH,C.P.SARNOWSKI, JRNL AUTH 2 J.WONG,A.LEITNER,S.JONAS,S.SHARMA,F.H.ALLAIN JRNL TITL SEQUENCE-SPECIFIC RNA RECOGNITION BY AN RGG MOTIF CONNECTS JRNL TITL 2 U1 AND U2 SNRNP FOR SPLICEOSOME ASSEMBLY. JRNL REF PROC.NATL.ACAD.SCI.USA V. 119 2022 JRNL REFN ESSN 1091-6490 JRNL PMID 35101980 JRNL DOI 10.1073/PNAS.2114092119 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7P08 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1292114768. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 60 REMARK 210 PRESSURE : ATMOSPHERIC PA REMARK 210 SAMPLE CONTENTS : 2.0 MM [U-13C; U-15N] SF3A1, 90% REMARK 210 H2O/10% D2O; 1.1 MM [U-100% 15N] REMARK 210 SF3A1, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HNCO; 3D H(CCO)NH; 3D 15N-1H REMARK 210 HSQC NOESY; 3D 13CALI-1H HSQC REMARK 210 NOESY; 3D 13CARO-1H HSQC NOESY; { REMARK 210 1H}-15N HETERONUCLEAR NOE REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 700 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; AVIII; AVANCE NEO REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CARA, CYANA, ATNOS, CANDID REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 710 79.98 -66.48 REMARK 500 1 ASN A 713 74.41 -100.89 REMARK 500 1 THR A 718 -76.58 -135.56 REMARK 500 1 GLU A 719 -13.68 -151.58 REMARK 500 1 THR A 748 -26.66 -144.48 REMARK 500 2 GLN A 710 79.75 -67.42 REMARK 500 2 ASN A 713 74.85 -101.80 REMARK 500 2 THR A 718 -78.13 -135.44 REMARK 500 2 GLU A 719 -13.14 -150.49 REMARK 500 2 GLN A 736 129.35 -39.71 REMARK 500 2 THR A 748 -26.17 -144.58 REMARK 500 3 GLN A 710 79.87 -66.75 REMARK 500 3 ASN A 713 74.08 -102.48 REMARK 500 3 THR A 718 -78.12 -135.35 REMARK 500 3 GLU A 719 -12.89 -149.81 REMARK 500 3 THR A 748 -26.73 -146.02 REMARK 500 4 GLN A 710 79.31 -66.93 REMARK 500 4 ASN A 713 74.11 -102.45 REMARK 500 4 THR A 718 -78.42 -135.48 REMARK 500 4 GLU A 719 -12.41 -150.10 REMARK 500 4 THR A 748 -26.26 -145.47 REMARK 500 5 GLN A 710 79.63 -66.90 REMARK 500 5 ASN A 713 74.43 -102.28 REMARK 500 5 THR A 718 -79.31 -135.19 REMARK 500 5 GLU A 719 -12.51 -149.66 REMARK 500 5 THR A 748 -26.23 -144.93 REMARK 500 6 GLN A 710 78.78 -67.19 REMARK 500 6 ASN A 713 73.91 -102.29 REMARK 500 6 THR A 718 -75.95 -135.51 REMARK 500 6 GLU A 719 -13.15 -149.53 REMARK 500 6 GLN A 736 129.23 -39.43 REMARK 500 6 THR A 748 -25.82 -144.85 REMARK 500 7 GLN A 710 79.66 -66.98 REMARK 500 7 ASN A 713 74.25 -101.47 REMARK 500 7 THR A 718 -78.08 -135.24 REMARK 500 7 GLU A 719 -12.88 -150.52 REMARK 500 7 THR A 748 -26.20 -145.21 REMARK 500 8 GLN A 710 80.27 -66.67 REMARK 500 8 THR A 718 -76.20 -135.45 REMARK 500 8 GLU A 719 -14.70 -152.97 REMARK 500 8 ASN A 723 35.87 -143.66 REMARK 500 8 THR A 748 -25.74 -143.75 REMARK 500 8 ASN A 774 17.96 57.13 REMARK 500 9 GLN A 710 78.96 -67.25 REMARK 500 9 ASN A 713 74.54 -103.23 REMARK 500 9 THR A 718 -76.12 -135.55 REMARK 500 9 GLU A 719 -13.06 -149.26 REMARK 500 9 GLN A 736 129.00 -39.67 REMARK 500 9 THR A 748 -25.79 -145.44 REMARK 500 10 GLN A 710 79.45 -67.31 REMARK 500 REMARK 500 THIS ENTRY HAS 109 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZKH RELATED DB: PDB REMARK 900 RELATED ID: 34643 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF THE HUMAN SF3A1 UBIQUITIN-LIKE DOMAIN DBREF1 7P08 A 704 793 UNP SF3A1-1_HUMAN DBREF2 7P08 A Q15459-1 704 793 SEQADV 7P08 GLY A 701 UNP Q15459-1 EXPRESSION TAG SEQADV 7P08 GLY A 702 UNP Q15459-1 EXPRESSION TAG SEQADV 7P08 SER A 703 UNP Q15459-1 EXPRESSION TAG SEQRES 1 A 93 GLY GLY SER PRO VAL SER ILE LYS VAL GLN VAL PRO ASN SEQRES 2 A 93 MET GLN ASP LYS THR GLU TRP LYS LEU ASN GLY GLN VAL SEQRES 3 A 93 LEU VAL PHE THR LEU PRO LEU THR ASP GLN VAL SER VAL SEQRES 4 A 93 ILE LYS VAL LYS ILE HIS GLU ALA THR GLY MET PRO ALA SEQRES 5 A 93 GLY LYS GLN LYS LEU GLN TYR GLU GLY ILE PHE ILE LYS SEQRES 6 A 93 ASP SER ASN SER LEU ALA TYR TYR ASN MET ALA ASN GLY SEQRES 7 A 93 ALA VAL ILE HIS LEU ALA LEU LYS GLU ARG GLY GLY ARG SEQRES 8 A 93 LYS LYS HELIX 1 AA1 VAL A 737 THR A 748 1 12 HELIX 2 AA2 PRO A 751 GLY A 753 5 3 SHEET 1 AA1 4 PHE A 729 PRO A 732 0 SHEET 2 AA1 4 PRO A 704 GLN A 710 -1 N VAL A 705 O LEU A 731 SHEET 3 AA1 4 ALA A 779 LEU A 785 1 O ALA A 779 N LYS A 708 SHEET 4 AA1 4 GLN A 755 TYR A 759 -1 N LYS A 756 O ALA A 784 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1