HEADER SIGNALING PROTEIN 29-JUN-21 7P0L TITLE CRYSTAL STRUCTURE OF S.POMBE MDB1 BRCT DOMAINS IN COMPLEX WITH A H2A TITLE 2 PHOSPHOPEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA DAMAGE RESPONSE PROTEIN MDB1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BRCT DOMAIN PROTEIN MDB1,MIDZONE AND DNA BREAK-LOCALIZING COMPND 5 PROTEIN 1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HISTONE H2A-BETA; COMPND 9 CHAIN: C, D; COMPND 10 SYNONYM: H2A.2; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE (STRAIN 972 / ATCC SOURCE 3 24843); SOURCE 4 ORGANISM_COMMON: FISSION YEAST; SOURCE 5 ORGANISM_TAXID: 284812; SOURCE 6 STRAIN: 972 / ATCC 24843; SOURCE 7 GENE: MDB1, SPAC2E11.14, SPACUNK4.14; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE (STRAIN 972 / ATCC SOURCE 13 24843); SOURCE 14 ORGANISM_COMMON: FISSION YEAST; SOURCE 15 ORGANISM_TAXID: 284812 KEYWDS DNA DAMAGE RESPONSE, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.DAY,A.W.OLIVER,L.H.PEARL REVDAT 2 31-JAN-24 7P0L 1 REMARK REVDAT 1 01-DEC-21 7P0L 0 JRNL AUTH M.DAY,A.W.OLIVER,L.H.PEARL JRNL TITL PHOSPHORYLATION-DEPENDENT ASSEMBLY OF DNA DAMAGE RESPONSE JRNL TITL 2 SYSTEMS AND THE CENTRAL ROLES OF TOPBP1. JRNL REF DNA REPAIR (AMST) V. 108 03232 2021 JRNL REFN ISSN 1568-7856 JRNL PMID 34678589 JRNL DOI 10.1016/J.DNAREP.2021.103232 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.V.AFONINE REMARK 1 TITL TOWARDS AUTOMATED CRYSTALLOGRAPHIC STRUCTURE REFINEMENT WITH REMARK 1 TITL 2 PHENIX.REFINE. REMARK 1 REF ACTA CRYSTALLOGR., SECT. D: V. 68 352 2012 REMARK 1 REF 2 BIOL. CRYSTALLOGR. REMARK 1 REFN ISSN 0907-4449 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 23392 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1158 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.1200 - 3.9400 0.97 2812 172 0.1988 0.2196 REMARK 3 2 3.9400 - 3.1300 0.98 2787 129 0.1916 0.2333 REMARK 3 3 3.1300 - 2.7300 0.99 2816 144 0.2141 0.2426 REMARK 3 4 2.7300 - 2.4800 0.99 2826 103 0.2064 0.2938 REMARK 3 5 2.4800 - 2.3000 1.00 2748 182 0.2130 0.2717 REMARK 3 6 2.3000 - 2.1700 0.98 2735 142 0.2335 0.3263 REMARK 3 7 2.1700 - 2.0600 0.98 2752 144 0.2558 0.2901 REMARK 3 8 2.0600 - 1.9700 0.99 2758 142 0.2724 0.3520 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.265 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.031 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.94 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3173 REMARK 3 ANGLE : 0.819 4289 REMARK 3 CHIRALITY : 0.050 499 REMARK 3 PLANARITY : 0.006 547 REMARK 3 DIHEDRAL : 18.297 1178 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND (RESID 387 THROUGH 404 OR REMARK 3 (RESID 405 THROUGH 407 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 408 THROUGH 409 OR (RESID 410 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 411 THROUGH 412 REMARK 3 OR (RESID 413 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 414 THROUGH 448 OR (RESID 449 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 )) OR RESID 450 THROUGH 455 OR (RESID 456 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 457 THROUGH 458 REMARK 3 OR (RESID 459 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 460 THROUGH 463 OR (RESID 464 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 )) OR RESID 465 THROUGH 479 OR (RESID 480 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 481 THROUGH 526 REMARK 3 OR (RESID 527 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 528 OR (RESID 529 AND (NAME N OR NAME CA REMARK 3 OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 530 THROUGH 540 OR (RESID 541 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 542 OR (RESID 543 REMARK 3 THROUGH 544 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 545 OR (RESID 546 THROUGH 547 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 )) OR RESID 548 OR (RESID 549 THROUGH 550 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 551 THROUGH 581)) REMARK 3 SELECTION : (CHAIN 'B' AND (RESID 387 THROUGH 507 OR REMARK 3 (RESID 508 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 509 REMARK 3 THROUGH 581)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7P0L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1292114815. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97957 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23405 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 48.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 1.0870 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7P0J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 28.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200MM MAGNESIUM CHLORIDE 100MM TRIS PH REMARK 280 8.0 30% (W/V) PEG 4000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 21.02500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 383 REMARK 465 ASN A 384 REMARK 465 LYS A 385 REMARK 465 HIS A 386 REMARK 465 MET B 383 REMARK 465 ASN B 384 REMARK 465 LYS B 385 REMARK 465 HIS B 386 REMARK 465 SER C 122 REMARK 465 GLY C 123 REMARK 465 ARG C 124 REMARK 465 THR C 125 REMARK 465 GLY C 126 REMARK 465 SER D 122 REMARK 465 GLY D 123 REMARK 465 ARG D 124 REMARK 465 THR D 125 REMARK 465 GLY D 126 REMARK 465 LYS D 127 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 506 CG1 CG2 REMARK 470 ASP A 508 CG OD1 OD2 REMARK 470 ARG B 405 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 406 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 407 CG OD1 ND2 REMARK 470 ARG B 410 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 413 CG CD OE1 OE2 REMARK 470 GLN B 449 CG CD OE1 NE2 REMARK 470 LYS B 456 CG CD CE NZ REMARK 470 LYS B 459 CG CD CE NZ REMARK 470 ARG B 464 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 480 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 506 CG1 CG2 REMARK 470 ASP B 527 CG OD1 OD2 REMARK 470 LYS B 529 CG CD CE NZ REMARK 470 GLN B 541 CG CD OE1 NE2 REMARK 470 ASP B 543 CG OD1 OD2 REMARK 470 ASN B 544 CG OD1 ND2 REMARK 470 GLN B 546 CG CD OE1 NE2 REMARK 470 GLU B 547 CG CD OE1 OE2 REMARK 470 ARG B 549 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 550 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN B 550 HG1 THR B 554 1.56 REMARK 500 O ILE B 497 NH1 ARG B 502 1.90 REMARK 500 OD2 ASP A 462 OH TYR B 559 1.98 REMARK 500 OE1 GLN D 130 O HOH D 201 2.05 REMARK 500 OE1 GLN B 412 O HOH B 601 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 470 81.94 -164.15 REMARK 500 ARG B 405 55.75 -68.21 REMARK 500 ARG B 406 -23.20 -176.48 REMARK 500 ASP B 470 82.85 -163.40 REMARK 500 MET B 505 -72.30 -113.17 REMARK 500 VAL B 506 36.07 39.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 660 DISTANCE = 5.99 ANGSTROMS DBREF 7P0L A 384 581 UNP O14079 MDB1_SCHPO 384 581 DBREF 7P0L B 384 581 UNP O14079 MDB1_SCHPO 384 581 DBREF 7P0L C 126 132 UNP P04910 H2A2_SCHPO 125 131 DBREF 7P0L D 126 132 UNP P04910 H2A2_SCHPO 125 131 SEQADV 7P0L MET A 383 UNP O14079 INITIATING METHIONINE SEQADV 7P0L MET B 383 UNP O14079 INITIATING METHIONINE SEQADV 7P0L SER C 122 UNP P04910 INSERTION SEQADV 7P0L GLY C 123 UNP P04910 INSERTION SEQADV 7P0L ARG C 124 UNP P04910 INSERTION SEQADV 7P0L THR C 125 UNP P04910 INSERTION SEQADV 7P0L SER D 122 UNP P04910 INSERTION SEQADV 7P0L GLY D 123 UNP P04910 INSERTION SEQADV 7P0L ARG D 124 UNP P04910 INSERTION SEQADV 7P0L THR D 125 UNP P04910 INSERTION SEQRES 1 A 199 MET ASN LYS HIS THR ASN LEU VAL THR SER SER PHE ASN SEQRES 2 A 199 LEU THR LYS PRO MET LYS SER PHE ILE ARG ARG ASN GLY SEQRES 3 A 199 LEU ARG VAL GLN GLU SER VAL THR ASP GLU THR ASP PHE SEQRES 4 A 199 VAL ILE LEU GLY SER PRO PRO LEU ARG ARG THR HIS LYS SEQRES 5 A 199 PHE LEU LEU ALA THR SER LEU GLY ILE PRO LEU VAL SER SEQRES 6 A 199 SER GLN TYR LEU THR ASP CYS ILE LYS SER GLY LYS VAL SEQRES 7 A 199 LEU ASP PHE ARG SER TYR LYS TYR LYS ASP GLU GLU ALA SEQRES 8 A 199 GLU ALA LYS TRP GLY PHE ARG LEU ASP ASP ILE HIS ARG SEQRES 9 A 199 ARG THR CYS PHE ASN GLY LYS ARG LEU TYR ILE THR LYS SEQRES 10 A 199 ALA ILE ARG ASP SER MET VAL GLY ASP SER ILE HIS GLY SEQRES 11 A 199 LEU TYR SER ILE LEU GLU THR SER GLY ALA GLU ILE VAL SEQRES 12 A 199 GLY ASP ILE LYS ARG ALA GLN GLU LYS ASP THR ILE ILE SEQRES 13 A 199 LEU ALA GLN PRO ASP ASN ASP GLN GLU GLY ARG ASN MET SEQRES 14 A 199 SER ALA THR GLY LEU ASN VAL TYR LYS ILE GLU LEU VAL SEQRES 15 A 199 ALA LEU SER ILE LEU ARG ASP ARG ILE ASP PHE ASP GLU SEQRES 16 A 199 PHE LEU ILE ASP SEQRES 1 B 199 MET ASN LYS HIS THR ASN LEU VAL THR SER SER PHE ASN SEQRES 2 B 199 LEU THR LYS PRO MET LYS SER PHE ILE ARG ARG ASN GLY SEQRES 3 B 199 LEU ARG VAL GLN GLU SER VAL THR ASP GLU THR ASP PHE SEQRES 4 B 199 VAL ILE LEU GLY SER PRO PRO LEU ARG ARG THR HIS LYS SEQRES 5 B 199 PHE LEU LEU ALA THR SER LEU GLY ILE PRO LEU VAL SER SEQRES 6 B 199 SER GLN TYR LEU THR ASP CYS ILE LYS SER GLY LYS VAL SEQRES 7 B 199 LEU ASP PHE ARG SER TYR LYS TYR LYS ASP GLU GLU ALA SEQRES 8 B 199 GLU ALA LYS TRP GLY PHE ARG LEU ASP ASP ILE HIS ARG SEQRES 9 B 199 ARG THR CYS PHE ASN GLY LYS ARG LEU TYR ILE THR LYS SEQRES 10 B 199 ALA ILE ARG ASP SER MET VAL GLY ASP SER ILE HIS GLY SEQRES 11 B 199 LEU TYR SER ILE LEU GLU THR SER GLY ALA GLU ILE VAL SEQRES 12 B 199 GLY ASP ILE LYS ARG ALA GLN GLU LYS ASP THR ILE ILE SEQRES 13 B 199 LEU ALA GLN PRO ASP ASN ASP GLN GLU GLY ARG ASN MET SEQRES 14 B 199 SER ALA THR GLY LEU ASN VAL TYR LYS ILE GLU LEU VAL SEQRES 15 B 199 ALA LEU SER ILE LEU ARG ASP ARG ILE ASP PHE ASP GLU SEQRES 16 B 199 PHE LEU ILE ASP SEQRES 1 C 11 SER GLY ARG THR GLY LYS PRO SEP GLN GLU LEU SEQRES 1 D 11 SER GLY ARG THR GLY LYS PRO SEP GLN GLU LEU MODRES 7P0L SEP C 129 SER MODIFIED RESIDUE MODRES 7P0L SEP D 129 SER MODIFIED RESIDUE HET SEP C 129 14 HET SEP D 129 13 HETNAM SEP PHOSPHOSERINE HETSYN SEP PHOSPHONOSERINE FORMUL 3 SEP 2(C3 H8 N O6 P) FORMUL 5 HOH *159(H2 O) HELIX 1 AA1 THR A 397 ASN A 407 1 11 HELIX 2 AA2 THR A 432 GLY A 442 1 11 HELIX 3 AA3 SER A 448 GLY A 458 1 11 HELIX 4 AA4 ASP A 462 LYS A 467 5 6 HELIX 5 AA5 ASP A 470 GLY A 478 1 9 HELIX 6 AA6 THR A 498 SER A 504 1 7 HELIX 7 AA7 GLY A 507 SER A 520 1 14 HELIX 8 AA8 ASP A 527 GLN A 532 1 6 HELIX 9 AA9 ASP A 545 ALA A 553 1 9 HELIX 10 AB1 ILE A 561 ASP A 571 1 11 HELIX 11 AB2 ASP A 574 LEU A 579 1 6 HELIX 12 AB3 THR B 397 ARG B 405 1 9 HELIX 13 AB4 THR B 432 GLY B 442 1 11 HELIX 14 AB5 SER B 448 GLY B 458 1 11 HELIX 15 AB6 ASP B 462 LYS B 467 5 6 HELIX 16 AB7 ASP B 470 GLY B 478 1 9 HELIX 17 AB8 THR B 498 VAL B 506 1 9 HELIX 18 AB9 GLY B 507 SER B 520 1 14 HELIX 19 AC1 ASP B 527 LYS B 534 1 8 HELIX 20 AC2 ASP B 545 ALA B 553 1 9 HELIX 21 AC3 ILE B 561 ASP B 571 1 11 HELIX 22 AC4 ASP B 574 LEU B 579 1 6 SHEET 1 AA1 4 ARG A 410 VAL A 411 0 SHEET 2 AA1 4 ASN A 388 SER A 392 1 N LEU A 389 O ARG A 410 SHEET 3 AA1 4 PHE A 421 LEU A 424 1 O ILE A 423 N VAL A 390 SHEET 4 AA1 4 LEU A 445 SER A 447 1 O VAL A 446 N VAL A 422 SHEET 1 AA2 4 GLU A 523 ILE A 524 0 SHEET 2 AA2 4 ARG A 494 ILE A 497 1 N LEU A 495 O GLU A 523 SHEET 3 AA2 4 THR A 536 ALA A 540 1 O LEU A 539 N TYR A 496 SHEET 4 AA2 4 VAL A 558 LYS A 560 1 O TYR A 559 N ALA A 540 SHEET 1 AA3 4 ARG B 410 GLN B 412 0 SHEET 2 AA3 4 ASN B 388 SER B 392 1 N LEU B 389 O GLN B 412 SHEET 3 AA3 4 THR B 419 LEU B 424 1 O ILE B 423 N VAL B 390 SHEET 4 AA3 4 LEU B 445 SER B 447 1 O VAL B 446 N VAL B 422 SHEET 1 AA4 4 GLU B 523 ILE B 524 0 SHEET 2 AA4 4 ARG B 494 ILE B 497 1 N LEU B 495 O GLU B 523 SHEET 3 AA4 4 ILE B 537 ALA B 540 1 O LEU B 539 N TYR B 496 SHEET 4 AA4 4 VAL B 558 LYS B 560 1 O TYR B 559 N ALA B 540 LINK C PRO C 128 N SEP C 129 1555 1555 1.33 LINK C SEP C 129 N GLN C 130 1555 1555 1.33 LINK C PRO D 128 N SEP D 129 1555 1555 1.33 LINK C SEP D 129 N GLN D 130 1555 1555 1.33 CISPEP 1 PRO A 427 PRO A 428 0 3.63 CISPEP 2 PRO B 427 PRO B 428 0 4.65 CRYST1 41.380 42.050 96.290 90.00 91.87 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024166 0.000000 0.000789 0.00000 SCALE2 0.000000 0.023781 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010391 0.00000