HEADER RNA BINDING PROTEIN 30-JUN-21 7P0V TITLE CRYSTAL STRUCTURE OF HUMAN SF3A1 UBIQUITIN-LIKE DOMAIN IN COMPLEX WITH TITLE 2 U1 SNRNA STEM-LOOP 4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOFORM 2 OF SPLICING FACTOR 3A SUBUNIT 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SF3A120,SPLICEOSOME-ASSOCIATED PROTEIN 114,SAP 114; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RNA (5'- COMPND 8 R(P*GP*GP*GP*GP*AP*CP*UP*GP*CP*GP*UP*UP*CP*GP*CP*GP*CP*UP*UP*UP*CP*CP COMPND 9 *CP*C)-3'); COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SF3A1, SAP114; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS SPLICING, RGG/RG MOTIF, INTRINSICALLY DISORDERED REGION, RNA BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.SABATH,T.DE VRIES,S.JONAS REVDAT 3 31-JAN-24 7P0V 1 REMARK REVDAT 2 27-APR-22 7P0V 1 JRNL REVDAT 1 20-APR-22 7P0V 0 JRNL AUTH T.DE VRIES,W.MARTELLY,S.CAMPAGNE,K.SABATH,C.P.SARNOWSKI, JRNL AUTH 2 J.WONG,A.LEITNER,S.JONAS,S.SHARMA,F.H.ALLAIN JRNL TITL SEQUENCE-SPECIFIC RNA RECOGNITION BY AN RGG MOTIF CONNECTS JRNL TITL 2 U1 AND U2 SNRNP FOR SPLICEOSOME ASSEMBLY. JRNL REF PROC.NATL.ACAD.SCI.USA V. 119 2022 JRNL REFN ESSN 1091-6490 JRNL PMID 35101980 JRNL DOI 10.1073/PNAS.2114092119 REMARK 2 REMARK 2 RESOLUTION. 1.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 26676 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1345 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.0500 - 3.3700 0.99 2691 142 0.1759 0.2323 REMARK 3 2 3.3700 - 2.6700 0.99 2581 136 0.2361 0.2268 REMARK 3 3 2.6700 - 2.3400 1.00 2553 135 0.2294 0.2742 REMARK 3 4 2.3400 - 2.1200 1.00 2535 132 0.2001 0.2549 REMARK 3 5 2.1200 - 1.9700 0.99 2526 132 0.2368 0.2493 REMARK 3 6 1.9700 - 1.8500 1.00 2519 133 0.2571 0.3396 REMARK 3 7 1.8500 - 1.7600 0.99 2532 133 0.3660 0.3972 REMARK 3 8 1.7600 - 1.6800 0.99 2481 130 0.4430 0.5307 REMARK 3 9 1.6800 - 1.6200 0.99 2503 140 0.4965 0.4984 REMARK 3 10 1.6200 - 1.5600 0.96 2410 132 0.5584 0.5523 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.282 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 42.786 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 75.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1289 REMARK 3 ANGLE : 0.861 1850 REMARK 3 CHIRALITY : 0.051 230 REMARK 3 PLANARITY : 0.006 147 REMARK 3 DIHEDRAL : 18.308 727 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 702 THROUGH 725 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.4470 -6.4454 -38.2303 REMARK 3 T TENSOR REMARK 3 T11: 0.4210 T22: 0.3436 REMARK 3 T33: 0.5715 T12: 0.0004 REMARK 3 T13: -0.0869 T23: 0.0132 REMARK 3 L TENSOR REMARK 3 L11: 7.7453 L22: 6.5049 REMARK 3 L33: 0.5695 L12: 0.4128 REMARK 3 L13: -1.3065 L23: -0.6573 REMARK 3 S TENSOR REMARK 3 S11: 0.0486 S12: 0.2834 S13: 1.0585 REMARK 3 S21: -0.5729 S22: -0.0059 S23: -0.1089 REMARK 3 S31: -0.2714 S32: 0.6597 S33: -0.2220 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 726 THROUGH 736 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.9643 -9.2937 -26.5727 REMARK 3 T TENSOR REMARK 3 T11: 0.5588 T22: 0.5044 REMARK 3 T33: 0.6772 T12: 0.0224 REMARK 3 T13: 0.0366 T23: -0.1372 REMARK 3 L TENSOR REMARK 3 L11: 2.6634 L22: 3.2329 REMARK 3 L33: 2.5155 L12: 2.5278 REMARK 3 L13: -2.2603 L23: -1.4496 REMARK 3 S TENSOR REMARK 3 S11: 0.1633 S12: -0.7477 S13: 0.8414 REMARK 3 S21: 0.7451 S22: -0.0225 S23: 0.8887 REMARK 3 S31: 0.0113 S32: 0.1717 S33: -0.2969 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 737 THROUGH 758 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.0391 -11.9086 -37.5665 REMARK 3 T TENSOR REMARK 3 T11: 0.3210 T22: 0.3585 REMARK 3 T33: 0.5028 T12: 0.0194 REMARK 3 T13: -0.0783 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 6.1887 L22: 9.0976 REMARK 3 L33: 7.9667 L12: 2.2088 REMARK 3 L13: 0.3400 L23: -0.0281 REMARK 3 S TENSOR REMARK 3 S11: -0.1884 S12: 0.2107 S13: 0.8815 REMARK 3 S21: -0.2058 S22: 0.0603 S23: 0.5831 REMARK 3 S31: -0.1100 S32: -0.1963 S33: 0.2252 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 759 THROUGH 785 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.0871 -18.1865 -28.8353 REMARK 3 T TENSOR REMARK 3 T11: 0.4014 T22: 0.4438 REMARK 3 T33: 0.3963 T12: 0.0310 REMARK 3 T13: -0.0878 T23: -0.0622 REMARK 3 L TENSOR REMARK 3 L11: 5.7611 L22: 5.7981 REMARK 3 L33: 3.8159 L12: -0.2730 REMARK 3 L13: -3.5342 L23: -1.2734 REMARK 3 S TENSOR REMARK 3 S11: -0.1944 S12: -0.3441 S13: -0.0230 REMARK 3 S21: 0.5332 S22: 0.1149 S23: 0.0001 REMARK 3 S31: 0.0106 S32: 0.0409 S33: 0.1326 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 786 THROUGH 791 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.3509 -22.6012 -49.7443 REMARK 3 T TENSOR REMARK 3 T11: 0.9295 T22: 0.6207 REMARK 3 T33: 0.4296 T12: -0.0346 REMARK 3 T13: -0.2524 T23: 0.0331 REMARK 3 L TENSOR REMARK 3 L11: 9.3919 L22: 3.2403 REMARK 3 L33: 4.6771 L12: -5.4438 REMARK 3 L13: -4.6801 L23: 2.2577 REMARK 3 S TENSOR REMARK 3 S11: 0.0088 S12: 1.7676 S13: 0.0365 REMARK 3 S21: -1.9266 S22: -0.4163 S23: 0.3722 REMARK 3 S31: 0.2167 S32: 0.6832 S33: 0.8771 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 139 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.5416 -25.1158 -61.3608 REMARK 3 T TENSOR REMARK 3 T11: 1.8161 T22: 2.5658 REMARK 3 T33: 1.0706 T12: -0.2720 REMARK 3 T13: -0.2121 T23: 0.3744 REMARK 3 L TENSOR REMARK 3 L11: 1.8296 L22: 1.9062 REMARK 3 L33: 2.1347 L12: -0.7640 REMARK 3 L13: -0.3391 L23: 0.8812 REMARK 3 S TENSOR REMARK 3 S11: 0.1445 S12: -1.3045 S13: -0.0003 REMARK 3 S21: 0.3136 S22: -0.2018 S23: -0.8858 REMARK 3 S31: -0.4268 S32: 2.5561 S33: -0.4354 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 144 THROUGH 158 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.4319 -24.8951 -47.9130 REMARK 3 T TENSOR REMARK 3 T11: 0.7238 T22: 0.4843 REMARK 3 T33: 0.6144 T12: -0.1148 REMARK 3 T13: -0.2922 T23: 0.0903 REMARK 3 L TENSOR REMARK 3 L11: 4.8547 L22: 2.3495 REMARK 3 L33: 6.7582 L12: -0.3151 REMARK 3 L13: 0.0259 L23: -0.4358 REMARK 3 S TENSOR REMARK 3 S11: -0.5773 S12: 0.6615 S13: 0.7638 REMARK 3 S21: -0.9259 S22: 0.3524 S23: 1.0853 REMARK 3 S31: -0.5340 S32: -0.3018 S33: 0.2627 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 159 THROUGH 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.0299 -20.8554 -67.5698 REMARK 3 T TENSOR REMARK 3 T11: 2.5956 T22: 2.0865 REMARK 3 T33: 0.8884 T12: -0.2148 REMARK 3 T13: -0.0480 T23: 0.2857 REMARK 3 L TENSOR REMARK 3 L11: 0.8844 L22: 3.1150 REMARK 3 L33: 4.2142 L12: 1.2678 REMARK 3 L13: -1.3630 L23: -1.1541 REMARK 3 S TENSOR REMARK 3 S11: 0.0800 S12: 1.7373 S13: -0.5505 REMARK 3 S21: -1.0679 S22: -1.3060 S23: -0.4232 REMARK 3 S31: 0.2379 S32: 1.7401 S33: -0.4797 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7P0V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1292116766. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26828 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.560 REMARK 200 RESOLUTION RANGE LOW (A) : 41.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 13.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.7300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.62 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1ZKH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS-HCL PH 8.5, 200 MM LI2SO4 REMARK 280 AND 40 % PEG400, VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 21.49650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.36100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 69.14000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 21.49650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.36100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 69.14000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 21.49650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 31.36100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 69.14000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 21.49650 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 31.36100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 69.14000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NA NA B 200 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 307 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 701 REMARK 465 LYS A 792 REMARK 465 LYS A 793 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 791 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 721 73.34 -111.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 200 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 C B 151 OP1 REMARK 620 2 C B 151 OP1 0.0 REMARK 620 3 HOH B 308 O 71.0 71.0 REMARK 620 4 HOH B 308 O 73.2 73.2 86.6 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7P08 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE HUMAN SF3A1 UBIQUITIN-LIKE DOMAIN DBREF 7P0V A 704 793 UNP Q15459 SF3A1_HUMAN 639 728 DBREF 7P0V B 139 162 PDB 7P0V 7P0V 139 162 SEQADV 7P0V GLY A 701 UNP Q15459 EXPRESSION TAG SEQADV 7P0V GLY A 702 UNP Q15459 EXPRESSION TAG SEQADV 7P0V SER A 703 UNP Q15459 EXPRESSION TAG SEQRES 1 A 93 GLY GLY SER PRO VAL SER ILE LYS VAL GLN VAL PRO ASN SEQRES 2 A 93 MET GLN ASP LYS THR GLU TRP LYS LEU ASN GLY GLN VAL SEQRES 3 A 93 LEU VAL PHE THR LEU PRO LEU THR ASP GLN VAL SER VAL SEQRES 4 A 93 ILE LYS VAL LYS ILE HIS GLU ALA THR GLY MET PRO ALA SEQRES 5 A 93 GLY LYS GLN LYS LEU GLN TYR GLU GLY ILE PHE ILE LYS SEQRES 6 A 93 ASP SER ASN SER LEU ALA TYR TYR ASN MET ALA ASN GLY SEQRES 7 A 93 ALA VAL ILE HIS LEU ALA LEU LYS GLU ARG GLY GLY ARG SEQRES 8 A 93 LYS LYS SEQRES 1 B 24 G G G G A C U G C G U U C SEQRES 2 B 24 G C G C U U U C C C C HET 1PE A 800 16 HET NA B 200 1 HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM NA SODIUM ION HETSYN 1PE PEG400 FORMUL 3 1PE C10 H22 O6 FORMUL 4 NA NA 1+ FORMUL 5 HOH *48(H2 O) HELIX 1 AA1 VAL A 737 THR A 748 1 12 HELIX 2 AA2 PRO A 751 GLY A 753 5 3 HELIX 3 AA3 LEU A 770 ASN A 774 5 5 SHEET 1 AA1 4 VAL A 726 PRO A 732 0 SHEET 2 AA1 4 PRO A 704 GLN A 710 -1 N VAL A 705 O LEU A 731 SHEET 3 AA1 4 ALA A 779 LEU A 785 1 O ALA A 779 N LYS A 708 SHEET 4 AA1 4 GLN A 755 GLN A 758 -1 N GLN A 758 O HIS A 782 LINK OP1 C B 151 NA NA B 200 1555 1555 2.28 LINK OP1 C B 151 NA NA B 200 1555 2545 2.28 LINK NA NA B 200 O HOH B 308 1555 1555 2.79 LINK NA NA B 200 O HOH B 308 1555 2545 2.79 CRYST1 42.993 62.722 138.280 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023260 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015943 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007232 0.00000