HEADER MEMBRANE PROTEIN 01-JUL-21 7P1C TITLE CRYSTAL STRUCTURE OF E.COLI BAMA BETA-BARREL IN COMPLEX WITH TITLE 2 DAROBACTIN B COMPND MOL_ID: 1; COMPND 2 MOLECULE: OUTER MEMBRANE PROTEIN ASSEMBLY FACTOR BAMA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: TRP-ASN-UX8-THR-LYS-ARG-PHE; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI O157:H7; SOURCE 3 ORGANISM_TAXID: 83334; SOURCE 4 GENE: BAMA, YAET, Z0188, ECS0179; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET15B; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS BETA-BARREL, OUTER MEMBRANE, PROTEIN INSERTION, PROTEIN FOLDING, KEYWDS 2 PROTEIN MATURATION, ANTIBIOTIC, NATURAL PRODUCT, CYCLIZED PEPTIDE, KEYWDS 3 MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.P.JAKOB,S.M.MODARESI,S.HILLER,T.MAIER REVDAT 2 31-JAN-24 7P1C 1 LINK REVDAT 1 06-APR-22 7P1C 0 JRNL AUTH N.BOHRINGER,R.GREEN,Y.LIU,U.METTAL,M.MARNER,S.M.MODARESI, JRNL AUTH 2 R.P.JAKOB,Z.G.WUISAN,T.MAIER,A.IINISHI,S.HILLER,K.LEWIS, JRNL AUTH 3 T.F.SCHABERLE JRNL TITL MUTASYNTHETIC PRODUCTION AND ANTIMICROBIAL CHARACTERIZATION JRNL TITL 2 OF DAROBACTIN ANALOGS. JRNL REF MICROBIOL SPECTR V. 9 53521 2021 JRNL REFN ISSN 2165-0497 JRNL PMID 34937193 JRNL DOI 10.1128/SPECTRUM.01535-21 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 19059 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.830 REMARK 3 FREE R VALUE TEST SET COUNT : 921 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.1070 - 4.7812 1.00 2630 145 0.2285 0.2345 REMARK 3 2 4.7812 - 3.7954 1.00 2596 126 0.2134 0.2171 REMARK 3 3 3.7954 - 3.3157 1.00 2609 126 0.2206 0.2777 REMARK 3 4 3.3157 - 3.0126 1.00 2574 136 0.2257 0.2502 REMARK 3 5 3.0126 - 2.7967 1.00 2558 127 0.2579 0.2792 REMARK 3 6 2.7967 - 2.6318 1.00 2623 126 0.2730 0.3002 REMARK 3 7 2.6318 - 2.5000 1.00 2548 135 0.2897 0.3194 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 424 THROUGH 446 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.3636 -1.7856 3.5457 REMARK 3 T TENSOR REMARK 3 T11: 0.6319 T22: 0.3086 REMARK 3 T33: 0.5332 T12: -0.0904 REMARK 3 T13: -0.0103 T23: -0.0160 REMARK 3 L TENSOR REMARK 3 L11: 0.7686 L22: 0.6300 REMARK 3 L33: 1.0605 L12: -0.5037 REMARK 3 L13: 0.4414 L23: -0.7583 REMARK 3 S TENSOR REMARK 3 S11: -0.5453 S12: 0.1864 S13: 0.6680 REMARK 3 S21: -0.4729 S22: 0.2660 S23: -0.4250 REMARK 3 S31: -0.0783 S32: 0.1043 S33: -0.0112 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 447 THROUGH 483 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.8710 0.8373 -2.4549 REMARK 3 T TENSOR REMARK 3 T11: 0.6030 T22: 0.1680 REMARK 3 T33: 0.5052 T12: 0.0418 REMARK 3 T13: 0.0167 T23: 0.0368 REMARK 3 L TENSOR REMARK 3 L11: 0.4528 L22: 0.2395 REMARK 3 L33: 0.7867 L12: 0.3067 REMARK 3 L13: -0.3244 L23: -0.0189 REMARK 3 S TENSOR REMARK 3 S11: -0.1044 S12: -0.1711 S13: 0.7563 REMARK 3 S21: -0.0311 S22: 0.1877 S23: -0.3462 REMARK 3 S31: -0.6594 S32: 0.1490 S33: 0.0766 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 484 THROUGH 537 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.3138 -12.0696 0.8665 REMARK 3 T TENSOR REMARK 3 T11: 0.4387 T22: 0.3783 REMARK 3 T33: 0.3662 T12: 0.0368 REMARK 3 T13: -0.0186 T23: -0.0190 REMARK 3 L TENSOR REMARK 3 L11: 1.3794 L22: 0.1596 REMARK 3 L33: 0.6220 L12: 0.4927 REMARK 3 L13: -0.2695 L23: -0.0194 REMARK 3 S TENSOR REMARK 3 S11: -0.1163 S12: 0.3554 S13: 0.2945 REMARK 3 S21: -0.4147 S22: 0.1070 S23: -0.3761 REMARK 3 S31: -0.4692 S32: -0.0317 S33: 0.0006 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 538 THROUGH 589 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.3109 -21.0469 4.5006 REMARK 3 T TENSOR REMARK 3 T11: 0.3280 T22: 0.3033 REMARK 3 T33: 0.3027 T12: -0.0000 REMARK 3 T13: 0.0166 T23: -0.0541 REMARK 3 L TENSOR REMARK 3 L11: 1.8822 L22: 0.4217 REMARK 3 L33: 0.9387 L12: 0.1752 REMARK 3 L13: 0.7731 L23: -0.4714 REMARK 3 S TENSOR REMARK 3 S11: 0.0750 S12: 0.1970 S13: -0.2108 REMARK 3 S21: -0.1194 S22: 0.0189 S23: -0.2146 REMARK 3 S31: 0.2073 S32: -0.0663 S33: 0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 590 THROUGH 675 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.3775 -17.0420 14.7442 REMARK 3 T TENSOR REMARK 3 T11: 0.2851 T22: 0.3539 REMARK 3 T33: 0.2827 T12: -0.0171 REMARK 3 T13: -0.0038 T23: -0.0378 REMARK 3 L TENSOR REMARK 3 L11: 0.7920 L22: 0.5327 REMARK 3 L33: 0.8469 L12: 0.5042 REMARK 3 L13: 0.3793 L23: 0.6589 REMARK 3 S TENSOR REMARK 3 S11: -0.0253 S12: -0.1597 S13: -0.1132 REMARK 3 S21: -0.0017 S22: -0.1053 S23: 0.0432 REMARK 3 S31: 0.0001 S32: -0.2849 S33: -0.0004 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 676 THROUGH 789 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.9704 -18.7811 21.1235 REMARK 3 T TENSOR REMARK 3 T11: 0.2838 T22: 0.2946 REMARK 3 T33: 0.3122 T12: -0.0096 REMARK 3 T13: 0.0057 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 1.0621 L22: 0.4133 REMARK 3 L33: 2.1462 L12: -0.4006 REMARK 3 L13: -0.0447 L23: 0.3038 REMARK 3 S TENSOR REMARK 3 S11: 0.0923 S12: -0.2664 S13: -0.2478 REMARK 3 S21: 0.3296 S22: 0.0465 S23: -0.1539 REMARK 3 S31: 0.2658 S32: -0.0448 S33: 0.0051 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 790 THROUGH 810 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.2050 -17.1993 19.6759 REMARK 3 T TENSOR REMARK 3 T11: 0.5344 T22: 0.4149 REMARK 3 T33: 0.3111 T12: 0.0364 REMARK 3 T13: -0.0689 T23: -0.0628 REMARK 3 L TENSOR REMARK 3 L11: 2.8318 L22: 0.8903 REMARK 3 L33: 0.9426 L12: 0.9353 REMARK 3 L13: -0.4330 L23: 0.1900 REMARK 3 S TENSOR REMARK 3 S11: -0.1274 S12: -0.1980 S13: -0.5277 REMARK 3 S21: -0.6088 S22: 0.1798 S23: -0.3279 REMARK 3 S31: 0.1258 S32: 0.3584 S33: -0.1998 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7P1C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-DEC-21. REMARK 100 THE DEPOSITION ID IS D_1292116765. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00002 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19080 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.107 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.27800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.00 REMARK 200 R MERGE FOR SHELL (I) : 2.95200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7NRF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M CALCIUM CHLORIDE DIHYDRATE, 0.1M REMARK 280 HEPES 7.5, 53% V/V PEG 400, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 27.03503 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.18600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 42.45389 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 27.03503 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.18600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 42.45389 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 REMARK 400 THE IS PEPTIDE-LIKE, A MEMBER OF CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: NULL REMARK 400 CHAIN: B REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: NULL REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 419 REMARK 465 MET A 420 REMARK 465 ARG A 421 REMARK 465 ASN A 422 REMARK 465 THR A 423 REMARK 465 ALA A 679 REMARK 465 SER A 680 REMARK 465 ASN A 681 REMARK 465 TYR A 682 REMARK 465 ASP A 683 REMARK 465 PRO A 684 REMARK 465 ASP A 685 REMARK 465 TYR A 686 REMARK 465 ASP A 687 REMARK 465 TYR A 688 REMARK 465 GLU A 689 REMARK 465 SER A 690 REMARK 465 ALA A 691 REMARK 465 THR A 692 REMARK 465 GLN A 693 REMARK 465 ASP A 694 REMARK 465 GLY A 695 REMARK 465 ALA A 696 REMARK 465 LYS A 697 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 UX8 B 3 C THR B 4 N 0.150 REMARK 500 THR B 4 C LYS B 5 N 0.152 REMARK 500 LYS B 5 C ARG B 6 N 0.153 REMARK 500 ARG B 6 NE ARG B 6 CZ 0.130 REMARK 500 ARG B 6 CZ ARG B 6 NH1 -0.083 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 481 49.60 -103.93 REMARK 500 ASN A 520 -149.66 -162.02 REMARK 500 ASP A 562 72.51 -111.24 REMARK 500 THR A 659 -74.63 -136.23 REMARK 500 GLU A 800 85.73 -158.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 C8E A 1101 REMARK 610 C8E A 1102 REMARK 610 C8E A 1103 REMARK 610 C8E A 1104 REMARK 610 C8E A 1105 REMARK 610 C8E A 1106 REMARK 610 C8E A 1107 DBREF 7P1C A 419 810 UNP P0A942 BAMA_ECO57 419 810 DBREF 7P1C B 1 7 PDB 7P1C 7P1C 1 7 SEQADV 7P1C HIS A 419 UNP P0A942 LYS 419 EXPRESSION TAG SEQADV 7P1C MET A 420 UNP P0A942 GLU 420 EXPRESSION TAG SEQADV 7P1C SER A 690 UNP P0A942 CYS 690 ENGINEERED MUTATION SEQADV 7P1C SER A 700 UNP P0A942 CYS 700 ENGINEERED MUTATION SEQRES 1 A 392 HIS MET ARG ASN THR GLY SER PHE ASN PHE GLY ILE GLY SEQRES 2 A 392 TYR GLY THR GLU SER GLY VAL SER PHE GLN ALA GLY VAL SEQRES 3 A 392 GLN GLN ASP ASN TRP LEU GLY THR GLY TYR ALA VAL GLY SEQRES 4 A 392 ILE ASN GLY THR LYS ASN ASP TYR GLN THR TYR ALA GLU SEQRES 5 A 392 LEU SER VAL THR ASN PRO TYR PHE THR VAL ASP GLY VAL SEQRES 6 A 392 SER LEU GLY GLY ARG LEU PHE TYR ASN ASP PHE GLN ALA SEQRES 7 A 392 ASP ASP ALA ASP LEU SER ASP TYR THR ASN LYS SER TYR SEQRES 8 A 392 GLY THR ASP VAL THR LEU GLY PHE PRO ILE ASN GLU TYR SEQRES 9 A 392 ASN SER LEU ARG ALA GLY LEU GLY TYR VAL HIS ASN SER SEQRES 10 A 392 LEU SER ASN MET GLN PRO GLN VAL ALA MET TRP ARG TYR SEQRES 11 A 392 LEU TYR SER MET GLY GLU HIS PRO SER THR SER ASP GLN SEQRES 12 A 392 ASP ASN SER PHE LYS THR ASP ASP PHE THR PHE ASN TYR SEQRES 13 A 392 GLY TRP THR TYR ASN LYS LEU ASP ARG GLY TYR PHE PRO SEQRES 14 A 392 THR ASP GLY SER ARG VAL ASN LEU THR GLY LYS VAL THR SEQRES 15 A 392 ILE PRO GLY SER ASP ASN GLU TYR TYR LYS VAL THR LEU SEQRES 16 A 392 ASP THR ALA THR TYR VAL PRO ILE ASP ASP ASP HIS LYS SEQRES 17 A 392 TRP VAL VAL LEU GLY ARG THR ARG TRP GLY TYR GLY ASP SEQRES 18 A 392 GLY LEU GLY GLY LYS GLU MET PRO PHE TYR GLU ASN PHE SEQRES 19 A 392 TYR ALA GLY GLY SER SER THR VAL ARG GLY PHE GLN SER SEQRES 20 A 392 ASN THR ILE GLY PRO LYS ALA VAL TYR PHE PRO HIS GLN SEQRES 21 A 392 ALA SER ASN TYR ASP PRO ASP TYR ASP TYR GLU SER ALA SEQRES 22 A 392 THR GLN ASP GLY ALA LYS ASP LEU SER LYS SER ASP ASP SEQRES 23 A 392 ALA VAL GLY GLY ASN ALA MET ALA VAL ALA SER LEU GLU SEQRES 24 A 392 PHE ILE THR PRO THR PRO PHE ILE SER ASP LYS TYR ALA SEQRES 25 A 392 ASN SER VAL ARG THR SER PHE PHE TRP ASP MET GLY THR SEQRES 26 A 392 VAL TRP ASP THR ASN TRP ASP SER SER GLN TYR SER GLY SEQRES 27 A 392 TYR PRO ASP TYR SER ASP PRO SER ASN ILE ARG MET SER SEQRES 28 A 392 ALA GLY ILE ALA LEU GLN TRP MET SER PRO LEU GLY PRO SEQRES 29 A 392 LEU VAL PHE SER TYR ALA GLN PRO PHE LYS LYS TYR ASP SEQRES 30 A 392 GLY ASP LYS ALA GLU GLN PHE GLN PHE ASN ILE GLY LYS SEQRES 31 A 392 THR TRP SEQRES 1 B 7 TRP ASN UX8 THR LYS ARG PHE HET UX8 B 3 23 HET C8E A1101 40 HET C8E A1102 32 HET C8E A1103 34 HET C8E A1104 39 HET C8E A1105 33 HET C8E A1106 26 HET C8E A1107 36 HETNAM UX8 (2~{S},3~{R})-2-AZANYL-3-(1~{H}-INDOL-3-YL)-3-OXIDANYL- HETNAM 2 UX8 PROPANOIC ACID HETNAM C8E (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE FORMUL 2 UX8 C11 H12 N2 O3 FORMUL 3 C8E 7(C16 H34 O5) FORMUL 10 HOH *86(H2 O) HELIX 1 AA1 ASP A 497 ASP A 500 5 4 HELIX 2 AA2 GLN A 542 MET A 552 1 11 HELIX 3 AA3 PRO A 647 ASN A 651 5 5 HELIX 4 AA4 SER A 726 ALA A 730 5 5 SHEET 1 AA118 ASN B 2 LYS B 5 0 SHEET 2 AA118 SER A 425 GLY A 433 -1 N PHE A 426 O LYS B 5 SHEET 3 AA118 PHE A 802 ILE A 806 -1 O ILE A 806 N TYR A 432 SHEET 4 AA118 GLY A 781 LYS A 792 -1 N SER A 786 O GLN A 803 SHEET 5 AA118 ARG A 767 SER A 778 -1 N LEU A 774 O PHE A 785 SHEET 6 AA118 VAL A 733 TRP A 745 -1 N ARG A 734 O GLN A 775 SHEET 7 AA118 ALA A 710 THR A 720 -1 N PHE A 718 O PHE A 737 SHEET 8 AA118 VAL A 628 GLY A 640 -1 N LEU A 630 O GLU A 717 SHEET 9 AA118 TYR A 608 PRO A 620 -1 N VAL A 619 O VAL A 629 SHEET 10 AA118 GLY A 590 THR A 600 -1 N GLY A 590 O TYR A 618 SHEET 11 AA118 SER A 564 ASN A 579 -1 N TRP A 576 O LEU A 595 SHEET 12 AA118 ASN A 523 SER A 537 -1 N LEU A 536 O PHE A 565 SHEET 13 AA118 THR A 505 PRO A 518 -1 N LEU A 515 O ALA A 527 SHEET 14 AA118 SER A 484 GLN A 495 -1 N GLY A 486 O THR A 514 SHEET 15 AA118 GLN A 466 ASN A 475 -1 N THR A 467 O ASP A 493 SHEET 16 AA118 ALA A 455 LYS A 462 -1 N GLY A 457 O SER A 472 SHEET 17 AA118 GLY A 437 GLN A 446 -1 N ALA A 442 O GLY A 460 SHEET 18 AA118 SER A 425 GLY A 433 -1 N GLY A 433 O GLY A 437 SHEET 1 AA2 2 GLY A 662 PHE A 663 0 SHEET 2 AA2 2 ALA A 799 GLU A 800 -1 O GLU A 800 N GLY A 662 SHEET 1 AA3 2 LYS A 671 TYR A 674 0 SHEET 2 AA3 2 SER A 700 ALA A 705 -1 O ASP A 704 N ALA A 672 LINK CZ2 TRP B 1 O9 UX8 B 3 1555 1555 1.40 LINK C ASN B 2 N UX8 B 3 1555 1555 1.44 LINK C UX8 B 3 N THR B 4 1555 1555 1.49 LINK CH2 UX8 B 3 CB LYS B 5 1555 1555 1.52 CRYST1 81.560 80.372 89.247 90.00 107.94 90.00 I 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012261 0.000000 0.003970 0.00000 SCALE2 0.000000 0.012442 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011778 0.00000 CONECT 5596 5637 CONECT 5611 5634 CONECT 5623 5624 5636 5646 CONECT 5624 5623 5627 5634 5638 CONECT 5625 5627 5628 5629 CONECT 5626 5629 5633 5635 CONECT 5627 5624 5625 5637 5639 CONECT 5628 5625 5635 5640 CONECT 5629 5625 5626 5630 CONECT 5630 5629 5631 5641 CONECT 5631 5630 5632 5642 CONECT 5632 5631 5633 5664 CONECT 5633 5626 5632 5643 CONECT 5634 5611 5624 5644 CONECT 5635 5626 5628 5645 CONECT 5636 5623 CONECT 5637 5596 5627 CONECT 5638 5624 CONECT 5639 5627 CONECT 5640 5628 CONECT 5641 5630 CONECT 5642 5631 CONECT 5643 5633 CONECT 5644 5634 CONECT 5645 5635 CONECT 5646 5623 CONECT 5664 5632 CONECT 5725 5726 5740 5741 5742 CONECT 5726 5725 5727 5743 5744 CONECT 5727 5726 5728 5745 5746 CONECT 5728 5727 5729 5747 5748 CONECT 5729 5728 5730 5749 5750 CONECT 5730 5729 5731 5751 5752 CONECT 5731 5730 5732 5753 5754 CONECT 5732 5731 5733 5755 5756 CONECT 5733 5732 5734 CONECT 5734 5733 5735 5757 5758 CONECT 5735 5734 5736 5759 5760 CONECT 5736 5735 5737 CONECT 5737 5736 5738 5761 5762 CONECT 5738 5737 5739 5763 5764 CONECT 5739 5738 CONECT 5740 5725 CONECT 5741 5725 CONECT 5742 5725 CONECT 5743 5726 CONECT 5744 5726 CONECT 5745 5727 CONECT 5746 5727 CONECT 5747 5728 CONECT 5748 5728 CONECT 5749 5729 CONECT 5750 5729 CONECT 5751 5730 CONECT 5752 5730 CONECT 5753 5731 CONECT 5754 5731 CONECT 5755 5732 CONECT 5756 5732 CONECT 5757 5734 CONECT 5758 5734 CONECT 5759 5735 CONECT 5760 5735 CONECT 5761 5737 CONECT 5762 5737 CONECT 5763 5738 CONECT 5764 5738 CONECT 5765 5766 5776 5777 5778 CONECT 5766 5765 5767 5779 5780 CONECT 5767 5766 5768 5781 5782 CONECT 5768 5767 5769 5783 5784 CONECT 5769 5768 5770 5785 5786 CONECT 5770 5769 5771 5787 5788 CONECT 5771 5770 5772 5789 5790 CONECT 5772 5771 5773 5791 5792 CONECT 5773 5772 5774 CONECT 5774 5773 5775 5793 5794 CONECT 5775 5774 5795 5796 CONECT 5776 5765 CONECT 5777 5765 CONECT 5778 5765 CONECT 5779 5766 CONECT 5780 5766 CONECT 5781 5767 CONECT 5782 5767 CONECT 5783 5768 CONECT 5784 5768 CONECT 5785 5769 CONECT 5786 5769 CONECT 5787 5770 CONECT 5788 5770 CONECT 5789 5771 CONECT 5790 5771 CONECT 5791 5772 CONECT 5792 5772 CONECT 5793 5774 CONECT 5794 5774 CONECT 5795 5775 CONECT 5796 5775 CONECT 5797 5798 5810 5811 5812 CONECT 5798 5797 5799 5813 5814 CONECT 5799 5798 5800 5815 5816 CONECT 5800 5799 5801 5817 5818 CONECT 5801 5800 5802 5819 5820 CONECT 5802 5801 5803 5821 5822 CONECT 5803 5802 5804 5823 5824 CONECT 5804 5803 5805 5825 5826 CONECT 5805 5804 5806 CONECT 5806 5805 5807 5827 5828 CONECT 5807 5806 5808 5829 5830 CONECT 5808 5807 5809 CONECT 5809 5808 CONECT 5810 5797 CONECT 5811 5797 CONECT 5812 5797 CONECT 5813 5798 CONECT 5814 5798 CONECT 5815 5799 CONECT 5816 5799 CONECT 5817 5800 CONECT 5818 5800 CONECT 5819 5801 CONECT 5820 5801 CONECT 5821 5802 CONECT 5822 5802 CONECT 5823 5803 CONECT 5824 5803 CONECT 5825 5804 CONECT 5826 5804 CONECT 5827 5806 CONECT 5828 5806 CONECT 5829 5807 CONECT 5830 5807 CONECT 5831 5832 5845 5846 5847 CONECT 5832 5831 5833 5848 5849 CONECT 5833 5832 5834 5850 5851 CONECT 5834 5833 5835 5852 5853 CONECT 5835 5834 5836 5854 5855 CONECT 5836 5835 5837 5856 5857 CONECT 5837 5836 5838 5858 5859 CONECT 5838 5837 5839 5860 5861 CONECT 5839 5838 5840 CONECT 5840 5839 5841 5862 5863 CONECT 5841 5840 5842 5864 5865 CONECT 5842 5841 5843 CONECT 5843 5842 5844 5866 5867 CONECT 5844 5843 5868 5869 CONECT 5845 5831 CONECT 5846 5831 CONECT 5847 5831 CONECT 5848 5832 CONECT 5849 5832 CONECT 5850 5833 CONECT 5851 5833 CONECT 5852 5834 CONECT 5853 5834 CONECT 5854 5835 CONECT 5855 5835 CONECT 5856 5836 CONECT 5857 5836 CONECT 5858 5837 CONECT 5859 5837 CONECT 5860 5838 CONECT 5861 5838 CONECT 5862 5840 CONECT 5863 5840 CONECT 5864 5841 CONECT 5865 5841 CONECT 5866 5843 CONECT 5867 5843 CONECT 5868 5844 CONECT 5869 5844 CONECT 5870 5871 5882 5883 5884 CONECT 5871 5870 5872 5885 5886 CONECT 5872 5871 5873 5887 5888 CONECT 5873 5872 5874 5889 5890 CONECT 5874 5873 5875 5891 5892 CONECT 5875 5874 5876 5893 5894 CONECT 5876 5875 5877 5895 5896 CONECT 5877 5876 5878 5897 5898 CONECT 5878 5877 5879 CONECT 5879 5878 5880 5899 5900 CONECT 5880 5879 5881 5901 5902 CONECT 5881 5880 CONECT 5882 5870 CONECT 5883 5870 CONECT 5884 5870 CONECT 5885 5871 CONECT 5886 5871 CONECT 5887 5872 CONECT 5888 5872 CONECT 5889 5873 CONECT 5890 5873 CONECT 5891 5874 CONECT 5892 5874 CONECT 5893 5875 CONECT 5894 5875 CONECT 5895 5876 CONECT 5896 5876 CONECT 5897 5877 CONECT 5898 5877 CONECT 5899 5879 CONECT 5900 5879 CONECT 5901 5880 CONECT 5902 5880 CONECT 5903 5904 5912 5913 5914 CONECT 5904 5903 5905 5915 5916 CONECT 5905 5904 5906 5917 5918 CONECT 5906 5905 5907 5919 5920 CONECT 5907 5906 5908 5921 5922 CONECT 5908 5907 5909 5923 5924 CONECT 5909 5908 5910 5925 5926 CONECT 5910 5909 5911 5927 5928 CONECT 5911 5910 CONECT 5912 5903 CONECT 5913 5903 CONECT 5914 5903 CONECT 5915 5904 CONECT 5916 5904 CONECT 5917 5905 CONECT 5918 5905 CONECT 5919 5906 CONECT 5920 5906 CONECT 5921 5907 CONECT 5922 5907 CONECT 5923 5908 CONECT 5924 5908 CONECT 5925 5909 CONECT 5926 5909 CONECT 5927 5910 CONECT 5928 5910 CONECT 5929 5930 5942 5943 5944 CONECT 5930 5929 5931 5945 5946 CONECT 5931 5930 5932 5947 5948 CONECT 5932 5931 5933 5949 5950 CONECT 5933 5932 5934 5951 5952 CONECT 5934 5933 5935 5953 5954 CONECT 5935 5934 5936 5955 5956 CONECT 5936 5935 5937 5957 5958 CONECT 5937 5936 5938 CONECT 5938 5937 5939 5959 5960 CONECT 5939 5938 5940 5961 5962 CONECT 5940 5939 5941 CONECT 5941 5940 5963 5964 CONECT 5942 5929 CONECT 5943 5929 CONECT 5944 5929 CONECT 5945 5930 CONECT 5946 5930 CONECT 5947 5931 CONECT 5948 5931 CONECT 5949 5932 CONECT 5950 5932 CONECT 5951 5933 CONECT 5952 5933 CONECT 5953 5934 CONECT 5954 5934 CONECT 5955 5935 CONECT 5956 5935 CONECT 5957 5936 CONECT 5958 5936 CONECT 5959 5938 CONECT 5960 5938 CONECT 5961 5939 CONECT 5962 5939 CONECT 5963 5941 CONECT 5964 5941 MASTER 398 0 8 4 22 0 0 6 3158 2 267 32 END