HEADER IMMUNE SYSTEM 05-JUL-21 7P2D TITLE STRUCTURE OF ALPHAMBETA2/CD11BCD18 HEADPIECE IN COMPLEX WITH A TITLE 2 NANOBODY COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOFORM 2 OF INTEGRIN ALPHA-M; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CD11 ANTIGEN-LIKE FAMILY MEMBER B,CR-3 ALPHA CHAIN,CELL COMPND 5 SURFACE GLYCOPROTEIN MAC-1 SUBUNIT ALPHA,LEUKOCYTE ADHESION RECEPTOR COMPND 6 MO1,NEUTROPHIL ADHERENCE RECEPTOR; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: INTEGRIN BETA; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: HCD11BNB1 NANOBODY; COMPND 14 CHAIN: C; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ITGAM, CD11B, CR3A; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: ITGB2; SOURCE 14 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 15 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 19 ORGANISM_COMMON: LLAMA; SOURCE 20 ORGANISM_TAXID: 9844; SOURCE 21 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 22 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INTEGRIN RECEPTOR, COMPLEMENT, ADHESION, PHAGOCYTOSIS, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR R.K.JENSEN,G.R.ANDERSEN REVDAT 3 31-JAN-24 7P2D 1 REMARK REVDAT 2 05-OCT-22 7P2D 1 JRNL REVDAT 1 04-MAY-22 7P2D 0 JRNL AUTH R.K.JENSEN,H.PEDERSEN,J.LORENTZEN,N.S.LAURSEN, JRNL AUTH 2 T.VORUP-JENSEN,G.R.ANDERSEN JRNL TITL STRUCTURAL INSIGHTS INTO THE FUNCTION-MODULATING EFFECTS OF JRNL TITL 2 NANOBODY BINDING TO THE INTEGRIN RECEPTOR ALPHA M BETA 2. JRNL REF J.BIOL.CHEM. V. 298 02168 2022 JRNL REFN ESSN 1083-351X JRNL PMID 35738398 JRNL DOI 10.1016/J.JBC.2022.102168 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.K.JENSEN,G.BAJIC,M.SEN,T.A.SPRINGER,T.VORUP-JENSEN, REMARK 1 AUTH 2 G.R.ANDERSEN REMARK 1 TITL COMPLEMENT RECEPTOR 3 FORMS A COMPACT HIGH-AFFINITY COMPLEX REMARK 1 TITL 2 WITH IC3B. REMARK 1 REF J IMMUNOL 2021 REMARK 1 REFN ESSN 1550-6606 REMARK 1 PMID 34117107 REMARK 1 DOI 10.4049/JIMMUNOL.2001208 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19RC5_4047 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 82.8 REMARK 3 NUMBER OF REFLECTIONS : 26422 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.262 REMARK 3 R VALUE (WORKING SET) : 0.261 REMARK 3 FREE R VALUE : 0.295 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.280 REMARK 3 FREE R VALUE TEST SET COUNT : 1131 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.9500 - 6.4000 1.00 4025 181 0.2328 0.2624 REMARK 3 2 6.3900 - 5.0800 1.00 3860 176 0.2722 0.3208 REMARK 3 3 5.0800 - 4.4400 1.00 3806 170 0.2369 0.2613 REMARK 3 4 4.4400 - 4.0300 1.00 3783 160 0.2661 0.3071 REMARK 3 5 4.0300 - 3.7400 1.00 3796 175 0.2987 0.3284 REMARK 3 6 3.7400 - 3.5200 0.81 3022 142 0.3240 0.3606 REMARK 3 7 3.5200 - 3.3500 0.47 1751 72 0.2974 0.3002 REMARK 3 8 3.3500 - 3.2000 0.33 1248 55 0.3436 0.3934 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.502 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.521 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 99.86 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 127.6 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 10614 REMARK 3 ANGLE : 1.156 14359 REMARK 3 CHIRALITY : 0.072 1610 REMARK 3 PLANARITY : 0.016 1895 REMARK 3 DIHEDRAL : 6.771 1499 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 1:129 OR RESID 325:600 OR RESID REMARK 3 1001:1002 OR RESID 2001:2002 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.8566 -29.3885 -44.8853 REMARK 3 T TENSOR REMARK 3 T11: 0.7344 T22: 0.4737 REMARK 3 T33: 0.4757 T12: 0.0824 REMARK 3 T13: 0.0230 T23: 0.1161 REMARK 3 L TENSOR REMARK 3 L11: 3.5414 L22: 4.3587 REMARK 3 L33: 3.7231 L12: 0.7832 REMARK 3 L13: -1.5790 L23: -0.6264 REMARK 3 S TENSOR REMARK 3 S11: -0.3331 S12: -0.5331 S13: -0.2480 REMARK 3 S21: 0.1916 S22: 0.3244 S23: -0.0316 REMARK 3 S31: 1.0645 S32: 0.2670 S33: -0.1036 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 130:324 OR RESID 2003 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.4649 -65.4340 -13.6964 REMARK 3 T TENSOR REMARK 3 T11: 1.0875 T22: 2.0161 REMARK 3 T33: 0.9275 T12: -0.7371 REMARK 3 T13: -0.2657 T23: 0.1029 REMARK 3 L TENSOR REMARK 3 L11: 3.8442 L22: 2.5914 REMARK 3 L33: 0.7065 L12: 0.5965 REMARK 3 L13: -1.4590 L23: -0.2279 REMARK 3 S TENSOR REMARK 3 S11: -0.5215 S12: 0.8528 S13: 0.8524 REMARK 3 S21: -0.1139 S22: 0.3439 S23: -0.5456 REMARK 3 S31: -1.4894 S32: 1.7706 S33: 0.1028 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 601:755 OR RESID 1021:1022 ) REMARK 3 ORIGIN FOR THE GROUP (A): 75.1383 13.3185 -62.8556 REMARK 3 T TENSOR REMARK 3 T11: 1.3174 T22: 1.2406 REMARK 3 T33: 1.6257 T12: -0.3544 REMARK 3 T13: 0.3704 T23: -0.0663 REMARK 3 L TENSOR REMARK 3 L11: 2.7433 L22: 7.1230 REMARK 3 L33: 2.7607 L12: -1.3901 REMARK 3 L13: 0.8450 L23: -1.5017 REMARK 3 S TENSOR REMARK 3 S11: 0.3272 S12: 0.2879 S13: 1.4025 REMARK 3 S21: 0.2744 S22: -0.7287 S23: -1.0719 REMARK 3 S31: -1.3667 S32: 0.5255 S33: 0.4713 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND (RESID 1:59 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.9780 26.6865 -69.1179 REMARK 3 T TENSOR REMARK 3 T11: 2.2189 T22: 1.4400 REMARK 3 T33: 0.8645 T12: 0.3592 REMARK 3 T13: -0.3741 T23: -0.1433 REMARK 3 L TENSOR REMARK 3 L11: 4.4749 L22: 4.9970 REMARK 3 L33: 3.8662 L12: -0.4378 REMARK 3 L13: 1.5249 L23: -0.6370 REMARK 3 S TENSOR REMARK 3 S11: -0.7347 S12: -0.8776 S13: 1.3046 REMARK 3 S21: -0.7207 S22: -0.1935 S23: -0.4468 REMARK 3 S31: -1.7475 S32: -1.0289 S33: 0.7871 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND (RESID 60:100 OR RESID 344:423 OR RESID REMARK 3 1031:1032 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.6602 -2.2663 -64.7378 REMARK 3 T TENSOR REMARK 3 T11: 0.6161 T22: 1.7218 REMARK 3 T33: 0.7958 T12: 0.0970 REMARK 3 T13: -0.0708 T23: 0.3325 REMARK 3 L TENSOR REMARK 3 L11: 5.1110 L22: 7.0578 REMARK 3 L33: 2.1658 L12: 2.9199 REMARK 3 L13: -3.1614 L23: -1.1243 REMARK 3 S TENSOR REMARK 3 S11: -0.0905 S12: -0.7361 S13: -0.2311 REMARK 3 S21: -0.1070 S22: 0.1983 S23: 0.9834 REMARK 3 S31: -0.0048 S32: -1.3296 S33: -0.0234 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND (RESID 101:343 OR RESID 2011:2012 OR REMARK 3 RESID 1041 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.5728 -36.5321 -55.5773 REMARK 3 T TENSOR REMARK 3 T11: 1.2609 T22: 1.9003 REMARK 3 T33: 1.0643 T12: -1.2402 REMARK 3 T13: 0.0774 T23: 0.6708 REMARK 3 L TENSOR REMARK 3 L11: 2.8541 L22: 0.7961 REMARK 3 L33: 1.1592 L12: 0.1198 REMARK 3 L13: -0.6620 L23: 0.1179 REMARK 3 S TENSOR REMARK 3 S11: -0.2040 S12: 0.6922 S13: -0.7346 REMARK 3 S21: -0.2295 S22: 0.5077 S23: 0.9608 REMARK 3 S31: 1.1990 S32: -1.5912 S33: 0.2463 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND (RESID 424:458) REMARK 3 ORIGIN FOR THE GROUP (A): 46.0252 25.5954 -84.2693 REMARK 3 T TENSOR REMARK 3 T11: 1.6516 T22: 1.3892 REMARK 3 T33: 0.9013 T12: -0.0733 REMARK 3 T13: -0.1189 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 6.2631 L22: 1.0219 REMARK 3 L33: 0.6869 L12: 1.4675 REMARK 3 L13: 1.1140 L23: 0.8419 REMARK 3 S TENSOR REMARK 3 S11: 0.1815 S12: -0.2019 S13: -0.2567 REMARK 3 S21: -0.4694 S22: -0.1400 S23: -0.4575 REMARK 3 S31: -0.5580 S32: 0.9805 S33: -0.0107 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 31.0577 -97.2501 -2.3705 REMARK 3 T TENSOR REMARK 3 T11: 3.0433 T22: 1.1997 REMARK 3 T33: 1.0613 T12: -0.0526 REMARK 3 T13: -0.3803 T23: -0.0449 REMARK 3 L TENSOR REMARK 3 L11: 4.7520 L22: 2.7805 REMARK 3 L33: 1.3984 L12: -0.8429 REMARK 3 L13: 1.2920 L23: -1.5719 REMARK 3 S TENSOR REMARK 3 S11: 1.1672 S12: -0.1041 S13: -1.5819 REMARK 3 S21: 0.8974 S22: -0.3626 S23: 0.2144 REMARK 3 S31: 2.4051 S32: 0.6222 S33: -0.7460 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DATA WAS CARRIED OUT AGAINST A DATA REMARK 3 CORRECTED FOR ANISOTROPY BY THE STARANISO SERVER REMARK 4 REMARK 4 7P2D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1292116838. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX IV REMARK 200 BEAMLINE : BIOMAX REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31887 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 46.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 36.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11400 REMARK 200 FOR THE DATA SET : 20.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 37.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4NEH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1:1 RATIO WITH RESERVOIR CONTAINING REMARK 280 1.25 M SODIUM MALONATE, 76 MM HEPES PH 8.0, 24 MM HEPES PH 6.5, REMARK 280 AND 0.5% JEFFAMINE ED2001 PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.37333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 166.74667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 166.74667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 83.37333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 61360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 752 REMARK 465 LYS A 753 REMARK 465 ASN A 754 REMARK 465 THR A 755 REMARK 465 GLY A 756 REMARK 465 GLY A 757 REMARK 465 LEU A 758 REMARK 465 GLU A 759 REMARK 465 VAL A 760 REMARK 465 LEU A 761 REMARK 465 PHE A 762 REMARK 465 GLN A 763 REMARK 465 GLU B 460 REMARK 465 LYS B 461 REMARK 465 ASN B 462 REMARK 465 CYS B 463 REMARK 465 GLU B 464 REMARK 465 PRO B 465 REMARK 465 ALA B 466 REMARK 465 ALA B 467 REMARK 465 LEU B 468 REMARK 465 GLN B 469 REMARK 465 THR B 470 REMARK 465 LEU B 471 REMARK 465 PHE B 472 REMARK 465 GLN B 473 REMARK 465 LEU C 122 REMARK 465 GLU C 123 REMARK 465 HIS C 124 REMARK 465 HIS C 125 REMARK 465 HIS C 126 REMARK 465 HIS C 127 REMARK 465 HIS C 128 REMARK 465 HIS C 129 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 10 CG2 REMARK 470 THR A 81 CG2 REMARK 470 THR A 377 CG2 REMARK 470 THR A 470 CG2 REMARK 470 THR A 683 CG2 REMARK 470 THR A 693 CG2 REMARK 470 THR A 695 CG2 REMARK 470 THR A 698 CG2 REMARK 470 THR A 725 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 579 OD1 ASP A 581 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 649 CG ARG A 649 CD 0.173 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 176 CA - CB - CG ANGL. DEV. = 15.6 DEGREES REMARK 500 TYR A 176 CB - CG - CD2 ANGL. DEV. = -4.1 DEGREES REMARK 500 TYR A 176 CB - CG - CD1 ANGL. DEV. = 4.2 DEGREES REMARK 500 TYR A 390 CB - CG - CD2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 649 CG - CD - NE ANGL. DEV. = 15.0 DEGREES REMARK 500 PHE A 720 CB - CA - C ANGL. DEV. = 12.2 DEGREES REMARK 500 PHE A 720 CB - CG - CD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 PHE A 720 CB - CG - CD1 ANGL. DEV. = 5.1 DEGREES REMARK 500 PHE A 749 CB - CG - CD2 ANGL. DEV. = -5.3 DEGREES REMARK 500 PHE A 749 CB - CG - CD1 ANGL. DEV. = 4.9 DEGREES REMARK 500 PHE B 149 CB - CG - CD2 ANGL. DEV. = -7.2 DEGREES REMARK 500 PHE B 149 CB - CG - CD1 ANGL. DEV. = 8.1 DEGREES REMARK 500 PHE B 247 CB - CA - C ANGL. DEV. = 14.0 DEGREES REMARK 500 PHE B 247 CB - CG - CD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 PHE B 247 CB - CG - CD1 ANGL. DEV. = 4.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 7 53.32 -97.92 REMARK 500 SER A 21 118.86 -163.53 REMARK 500 GLN A 63 53.17 -93.43 REMARK 500 PRO A 91 41.13 -89.92 REMARK 500 GLU A 99 -1.87 65.65 REMARK 500 ASP A 132 160.58 66.14 REMARK 500 SER A 177 -152.90 -152.16 REMARK 500 HIS A 332 -2.70 66.32 REMARK 500 LYS A 368 -22.63 71.05 REMARK 500 GLN A 469 -109.13 39.91 REMARK 500 ARG A 564 52.87 -95.36 REMARK 500 ALA A 617 -22.79 68.89 REMARK 500 ARG A 618 26.54 49.04 REMARK 500 PHE A 621 45.37 -82.95 REMARK 500 GLU A 622 44.70 -144.13 REMARK 500 GLU A 632 161.39 85.42 REMARK 500 LEU A 650 164.95 -43.85 REMARK 500 GLU A 652 -4.50 66.47 REMARK 500 GLN A 654 74.90 -100.36 REMARK 500 LYS A 680 19.84 59.26 REMARK 500 ARG B 49 55.58 -94.93 REMARK 500 ALA B 53 -14.00 70.29 REMARK 500 THR B 153 51.34 -94.16 REMARK 500 THR B 234 70.93 47.44 REMARK 500 ASN B 350 -167.71 -79.89 REMARK 500 VAL B 368 172.95 69.03 REMARK 500 GLN B 430 -79.01 -116.51 REMARK 500 SER B 431 49.42 32.57 REMARK 500 ASP B 451 48.78 -93.34 REMARK 500 TYR B 454 -118.77 61.29 REMARK 500 ASN C 33 -64.25 -121.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 115 0.27 SIDE CHAIN REMARK 500 ARG A 487 0.08 SIDE CHAIN REMARK 500 ARG A 649 0.15 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 514 OD1 REMARK 620 2 ASN A 516 OD1 69.7 REMARK 620 3 ASP A 518 OD1 68.7 70.1 REMARK 620 4 LEU A 520 O 90.8 146.6 77.7 REMARK 620 5 ASP A 522 OD1 164.2 113.0 127.1 93.3 REMARK 620 6 ASP A 522 OD2 111.9 80.1 148.0 133.2 55.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 579 OG1 REMARK 620 2 ASP A 581 OD1 52.8 REMARK 620 3 ASP A 581 OD2 64.5 55.5 REMARK 620 4 LEU A 583 O 126.3 94.3 135.2 REMARK 620 5 ASP A 585 OD1 113.4 157.4 140.2 80.2 REMARK 620 6 ASP A 585 OD2 76.3 111.3 137.9 80.5 46.2 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7NP9 RELATED DB: PDB REMARK 900 STRUCTURE OF FREE NANOBODY HCD11BNB1 DBREF 7P2D A 1 756 UNP P11215 ITAM_HUMAN 17 772 DBREF1 7P2D B 1 460 UNP A0A494C0X7_HUMAN DBREF2 7P2D B A0A494C0X7 23 482 DBREF 7P2D C 1 129 PDB 7P2D 7P2D 1 129 SEQADV 7P2D ARG A 224 UNP P11215 ASN 240 CONFLICT SEQADV 7P2D ARG A 681 UNP P11215 ASN 697 CONFLICT SEQADV 7P2D THR A 755 UNP P11215 CYS 771 CONFLICT SEQADV 7P2D GLY A 757 UNP P11215 EXPRESSION TAG SEQADV 7P2D LEU A 758 UNP P11215 EXPRESSION TAG SEQADV 7P2D GLU A 759 UNP P11215 EXPRESSION TAG SEQADV 7P2D VAL A 760 UNP P11215 EXPRESSION TAG SEQADV 7P2D LEU A 761 UNP P11215 EXPRESSION TAG SEQADV 7P2D PHE A 762 UNP P11215 EXPRESSION TAG SEQADV 7P2D GLN A 763 UNP P11215 EXPRESSION TAG SEQADV 7P2D LYS B 461 UNP A0A494C0X EXPRESSION TAG SEQADV 7P2D ASN B 462 UNP A0A494C0X EXPRESSION TAG SEQADV 7P2D CYS B 463 UNP A0A494C0X EXPRESSION TAG SEQADV 7P2D GLU B 464 UNP A0A494C0X EXPRESSION TAG SEQADV 7P2D PRO B 465 UNP A0A494C0X EXPRESSION TAG SEQADV 7P2D ALA B 466 UNP A0A494C0X EXPRESSION TAG SEQADV 7P2D ALA B 467 UNP A0A494C0X EXPRESSION TAG SEQADV 7P2D LEU B 468 UNP A0A494C0X EXPRESSION TAG SEQADV 7P2D GLN B 469 UNP A0A494C0X EXPRESSION TAG SEQADV 7P2D THR B 470 UNP A0A494C0X EXPRESSION TAG SEQADV 7P2D LEU B 471 UNP A0A494C0X EXPRESSION TAG SEQADV 7P2D PHE B 472 UNP A0A494C0X EXPRESSION TAG SEQADV 7P2D GLN B 473 UNP A0A494C0X EXPRESSION TAG SEQRES 1 A 763 PHE ASN LEU ASP THR GLU ASN ALA MET THR PHE GLN GLU SEQRES 2 A 763 ASN ALA ARG GLY PHE GLY GLN SER VAL VAL GLN LEU GLN SEQRES 3 A 763 GLY SER ARG VAL VAL VAL GLY ALA PRO GLN GLU ILE VAL SEQRES 4 A 763 ALA ALA ASN GLN ARG GLY SER LEU TYR GLN CYS ASP TYR SEQRES 5 A 763 SER THR GLY SER CYS GLU PRO ILE ARG LEU GLN VAL PRO SEQRES 6 A 763 VAL GLU ALA VAL ASN MET SER LEU GLY LEU SER LEU ALA SEQRES 7 A 763 ALA THR THR SER PRO PRO GLN LEU LEU ALA CYS GLY PRO SEQRES 8 A 763 THR VAL HIS GLN THR CYS SER GLU ASN THR TYR VAL LYS SEQRES 9 A 763 GLY LEU CYS PHE LEU PHE GLY SER ASN LEU ARG GLN GLN SEQRES 10 A 763 PRO GLN LYS PHE PRO GLU ALA LEU ARG GLY CYS PRO GLN SEQRES 11 A 763 GLU ASP SER ASP ILE ALA PHE LEU ILE ASP GLY SER GLY SEQRES 12 A 763 SER ILE ILE PRO HIS ASP PHE ARG ARG MET LYS GLU PHE SEQRES 13 A 763 VAL SER THR VAL MET GLU GLN LEU LYS LYS SER LYS THR SEQRES 14 A 763 LEU PHE SER LEU MET GLN TYR SER GLU GLU PHE ARG ILE SEQRES 15 A 763 HIS PHE THR PHE LYS GLU PHE GLN ASN ASN PRO ASN PRO SEQRES 16 A 763 ARG SER LEU VAL LYS PRO ILE THR GLN LEU LEU GLY ARG SEQRES 17 A 763 THR HIS THR ALA THR GLY ILE ARG LYS VAL VAL ARG GLU SEQRES 18 A 763 LEU PHE ARG ILE THR ASN GLY ALA ARG LYS ASN ALA PHE SEQRES 19 A 763 LYS ILE LEU VAL VAL ILE THR ASP GLY GLU LYS PHE GLY SEQRES 20 A 763 ASP PRO LEU GLY TYR GLU ASP VAL ILE PRO GLU ALA ASP SEQRES 21 A 763 ARG GLU GLY VAL ILE ARG TYR VAL ILE GLY VAL GLY ASP SEQRES 22 A 763 ALA PHE ARG SER GLU LYS SER ARG GLN GLU LEU ASN THR SEQRES 23 A 763 ILE ALA SER LYS PRO PRO ARG ASP HIS VAL PHE GLN VAL SEQRES 24 A 763 ASN ASN PHE GLU ALA LEU LYS THR ILE GLN ASN GLN LEU SEQRES 25 A 763 ARG GLU LYS ILE PHE ALA ILE GLU GLY THR GLN THR GLY SEQRES 26 A 763 SER SER SER SER PHE GLU HIS GLU MET SER GLN GLU GLY SEQRES 27 A 763 PHE SER ALA ALA ILE THR SER ASN GLY PRO LEU LEU SER SEQRES 28 A 763 THR VAL GLY SER TYR ASP TRP ALA GLY GLY VAL PHE LEU SEQRES 29 A 763 TYR THR SER LYS GLU LYS SER THR PHE ILE ASN MET THR SEQRES 30 A 763 ARG VAL ASP SER ASP MET ASN ASP ALA TYR LEU GLY TYR SEQRES 31 A 763 ALA ALA ALA ILE ILE LEU ARG ASN ARG VAL GLN SER LEU SEQRES 32 A 763 VAL LEU GLY ALA PRO ARG TYR GLN HIS ILE GLY LEU VAL SEQRES 33 A 763 ALA MET PHE ARG GLN ASN THR GLY MET TRP GLU SER ASN SEQRES 34 A 763 ALA ASN VAL LYS GLY THR GLN ILE GLY ALA TYR PHE GLY SEQRES 35 A 763 ALA SER LEU CYS SER VAL ASP VAL ASP SER ASN GLY SER SEQRES 36 A 763 THR ASP LEU VAL LEU ILE GLY ALA PRO HIS TYR TYR GLU SEQRES 37 A 763 GLN THR ARG GLY GLY GLN VAL SER VAL CYS PRO LEU PRO SEQRES 38 A 763 ARG GLY GLN ARG ALA ARG TRP GLN CYS ASP ALA VAL LEU SEQRES 39 A 763 TYR GLY GLU GLN GLY GLN PRO TRP GLY ARG PHE GLY ALA SEQRES 40 A 763 ALA LEU THR VAL LEU GLY ASP VAL ASN GLY ASP LYS LEU SEQRES 41 A 763 THR ASP VAL ALA ILE GLY ALA PRO GLY GLU GLU ASP ASN SEQRES 42 A 763 ARG GLY ALA VAL TYR LEU PHE HIS GLY THR SER GLY SER SEQRES 43 A 763 GLY ILE SER PRO SER HIS SER GLN ARG ILE ALA GLY SER SEQRES 44 A 763 LYS LEU SER PRO ARG LEU GLN TYR PHE GLY GLN SER LEU SEQRES 45 A 763 SER GLY GLY GLN ASP LEU THR MET ASP GLY LEU VAL ASP SEQRES 46 A 763 LEU THR VAL GLY ALA GLN GLY HIS VAL LEU LEU LEU ARG SEQRES 47 A 763 SER GLN PRO VAL LEU ARG VAL LYS ALA ILE MET GLU PHE SEQRES 48 A 763 ASN PRO ARG GLU VAL ALA ARG ASN VAL PHE GLU CYS ASN SEQRES 49 A 763 ASP GLN VAL VAL LYS GLY LYS GLU ALA GLY GLU VAL ARG SEQRES 50 A 763 VAL CYS LEU HIS VAL GLN LYS SER THR ARG ASP ARG LEU SEQRES 51 A 763 ARG GLU GLY GLN ILE GLN SER VAL VAL THR TYR ASP LEU SEQRES 52 A 763 ALA LEU ASP SER GLY ARG PRO HIS SER ARG ALA VAL PHE SEQRES 53 A 763 ASN GLU THR LYS ARG SER THR ARG ARG GLN THR GLN VAL SEQRES 54 A 763 LEU GLY LEU THR GLN THR CYS GLU THR LEU LYS LEU GLN SEQRES 55 A 763 LEU PRO ASN CYS ILE GLU ASP PRO VAL SER PRO ILE VAL SEQRES 56 A 763 LEU ARG LEU ASN PHE SER LEU VAL GLY THR PRO LEU SER SEQRES 57 A 763 ALA PHE GLY ASN LEU ARG PRO VAL LEU ALA GLU ASP ALA SEQRES 58 A 763 GLN ARG LEU PHE THR ALA LEU PHE PRO PHE GLU LYS ASN SEQRES 59 A 763 THR GLY GLY LEU GLU VAL LEU PHE GLN SEQRES 1 B 473 GLN GLU CYS THR LYS PHE LYS VAL SER SER CYS ARG GLU SEQRES 2 B 473 CYS ILE GLU SER GLY PRO GLY CYS THR TRP CYS GLN LYS SEQRES 3 B 473 LEU ASN PHE THR GLY PRO GLY ASP PRO ASP SER ILE ARG SEQRES 4 B 473 CYS ASP THR ARG PRO GLN LEU LEU MET ARG GLY CYS ALA SEQRES 5 B 473 ALA ASP ASP ILE MET ASP PRO THR SER LEU ALA GLU THR SEQRES 6 B 473 GLN GLU ASP HIS ASN GLY GLY GLN LYS GLN LEU SER PRO SEQRES 7 B 473 GLN LYS VAL THR LEU TYR LEU ARG PRO GLY GLN ALA ALA SEQRES 8 B 473 ALA PHE ASN VAL THR PHE ARG ARG ALA LYS GLY TYR PRO SEQRES 9 B 473 ILE ASP LEU TYR TYR LEU MET ASP LEU SER TYR SER MET SEQRES 10 B 473 LEU ASP ASP LEU ARG ASN VAL LYS LYS LEU GLY GLY ASP SEQRES 11 B 473 LEU LEU ARG ALA LEU ASN GLU ILE THR GLU SER GLY ARG SEQRES 12 B 473 ILE GLY PHE GLY SER PHE VAL ASP LYS THR VAL LEU PRO SEQRES 13 B 473 PHE VAL ASN THR HIS PRO ASP LYS LEU ARG ASN PRO CYS SEQRES 14 B 473 PRO ASN LYS GLU LYS GLU CYS GLN PRO PRO PHE ALA PHE SEQRES 15 B 473 ARG HIS VAL LEU LYS LEU THR ASN ASN SER ASN GLN PHE SEQRES 16 B 473 GLN THR GLU VAL GLY LYS GLN LEU ILE SER GLY ASN LEU SEQRES 17 B 473 ASP ALA PRO GLU GLY GLY LEU ASP ALA MET MET GLN VAL SEQRES 18 B 473 ALA ALA CYS PRO GLU GLU ILE GLY TRP ARG ASN VAL THR SEQRES 19 B 473 ARG LEU LEU VAL PHE ALA THR ASP ASP GLY PHE HIS PHE SEQRES 20 B 473 ALA GLY ASP GLY LYS LEU GLY ALA ILE LEU THR PRO ASN SEQRES 21 B 473 ASP GLY ARG CYS HIS LEU GLU ASP ASN LEU TYR LYS ARG SEQRES 22 B 473 SER ASN GLU PHE ASP TYR PRO SER VAL GLY GLN LEU ALA SEQRES 23 B 473 HIS LYS LEU ALA GLU ASN ASN ILE GLN PRO ILE PHE ALA SEQRES 24 B 473 VAL THR SER ARG MET VAL LYS THR TYR GLU LYS LEU THR SEQRES 25 B 473 GLU ILE ILE PRO LYS SER ALA VAL GLY GLU LEU SER GLU SEQRES 26 B 473 ASP SER SER ASN VAL VAL HIS LEU ILE LYS ASN ALA TYR SEQRES 27 B 473 ASN LYS LEU SER SER ARG VAL PHE LEU ASP HIS ASN ALA SEQRES 28 B 473 LEU PRO ASP THR LEU LYS VAL THR TYR ASP SER PHE CYS SEQRES 29 B 473 SER ASN GLY VAL THR HIS ARG ASN GLN PRO ARG GLY ASP SEQRES 30 B 473 CYS ASP GLY VAL GLN ILE ASN VAL PRO ILE THR PHE GLN SEQRES 31 B 473 VAL LYS VAL THR ALA THR GLU CYS ILE GLN GLU GLN SER SEQRES 32 B 473 PHE VAL ILE ARG ALA LEU GLY PHE THR ASP ILE VAL THR SEQRES 33 B 473 VAL GLN VAL LEU PRO GLN CYS GLU CYS ARG CYS ARG ASP SEQRES 34 B 473 GLN SER ARG ASP ARG SER LEU CYS HIS GLY LYS GLY PHE SEQRES 35 B 473 LEU GLU CYS GLY ILE CYS ARG CYS ASP THR GLY TYR ILE SEQRES 36 B 473 GLY LYS ASN CYS GLU LYS ASN CYS GLU PRO ALA ALA LEU SEQRES 37 B 473 GLN THR LEU PHE GLN SEQRES 1 C 129 MET GLN VAL GLN LEU VAL GLU THR GLY GLY GLY LEU VAL SEQRES 2 C 129 GLN ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER SEQRES 3 C 129 GLY ASN ILE ASN SER PHE ASN ALA MET GLY TRP PHE ARG SEQRES 4 C 129 GLN ALA PRO GLY LYS GLN ARG GLU LEU VAL ALA ALA ILE SEQRES 5 C 129 THR PHE GLY GLY ARG THR ASN TYR ALA ASP SER VAL LYS SEQRES 6 C 129 GLY ARG PHE THR ILE SER ARG ASP ASN THR LYS GLY SER SEQRES 7 C 129 VAL TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SEQRES 8 C 129 ALA VAL TYR TYR CYS ALA ALA SER GLU ASN ASN LEU LEU SEQRES 9 C 129 THR GLY VAL TRP HIS TYR TRP GLY ARG GLY THR GLN VAL SEQRES 10 C 129 THR VAL SER SER LEU GLU HIS HIS HIS HIS HIS HIS HET NAG D 1 14 HET NAG D 2 14 HET NAG E 1 14 HET NAG E 2 14 HET NAG F 1 14 HET NAG F 2 14 HET NAG G 1 14 HET NAG G 2 14 HET CA A2001 1 HET CA A2002 1 HET NAG B 501 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 NAG 9(C8 H15 N O6) FORMUL 8 CA 2(CA 2+) HELIX 1 AA1 ILE A 146 LYS A 165 1 20 HELIX 2 AA2 THR A 185 ASN A 192 1 8 HELIX 3 AA3 ASN A 194 LYS A 200 1 7 HELIX 4 AA4 HIS A 210 GLU A 221 1 12 HELIX 5 AA5 ARG A 224 GLY A 228 5 5 HELIX 6 AA6 GLY A 251 GLU A 262 1 12 HELIX 7 AA7 ASP A 273 ARG A 276 5 4 HELIX 8 AA8 SER A 277 ALA A 288 1 12 HELIX 9 AA9 PRO A 291 HIS A 295 1 5 HELIX 10 AB1 ASN A 301 GLU A 303 5 3 HELIX 11 AB2 ALA A 304 GLY A 321 1 18 HELIX 12 AB3 GLY A 529 ARG A 534 1 6 HELIX 13 AB4 GLY A 558 SER A 562 1 5 HELIX 14 AB5 SER B 10 SER B 17 1 8 HELIX 15 AB6 PRO B 35 ILE B 38 5 4 HELIX 16 AB7 THR B 42 ARG B 49 1 8 HELIX 17 AB8 SER B 114 SER B 116 5 3 HELIX 18 AB9 MET B 117 GLY B 128 1 12 HELIX 19 AC1 GLY B 128 THR B 139 1 12 HELIX 20 AC2 HIS B 161 ASN B 167 1 7 HELIX 21 AC3 ASN B 191 LYS B 201 1 11 HELIX 22 AC4 GLY B 213 CYS B 224 1 12 HELIX 23 AC5 CYS B 224 GLY B 229 1 6 HELIX 24 AC6 GLY B 249 ALA B 255 5 7 HELIX 25 AC7 SER B 281 ASN B 292 1 12 HELIX 26 AC8 MET B 304 LYS B 310 1 7 HELIX 27 AC9 LEU B 311 GLU B 313 5 3 HELIX 28 AD1 VAL B 330 ARG B 344 1 15 HELIX 29 AD2 LEU B 436 LYS B 440 5 5 HELIX 30 AD3 ASN C 28 PHE C 32 5 5 HELIX 31 AD4 ASP C 62 LYS C 65 5 4 HELIX 32 AD5 LYS C 87 THR C 91 5 5 SHEET 1 AA1 4 MET A 9 GLN A 12 0 SHEET 2 AA1 4 HIS A 593 LEU A 597 -1 O VAL A 594 N PHE A 11 SHEET 3 AA1 4 LEU A 586 GLY A 589 -1 N LEU A 586 O LEU A 597 SHEET 4 AA1 4 LEU A 572 GLY A 574 -1 N SER A 573 O THR A 587 SHEET 1 AA2 4 VAL A 22 GLN A 24 0 SHEET 2 AA2 4 ARG A 29 ALA A 34 -1 O VAL A 31 N VAL A 23 SHEET 3 AA2 4 SER A 46 ASP A 51 -1 O SER A 46 N ALA A 34 SHEET 4 AA2 4 CYS A 57 PRO A 59 -1 O GLU A 58 N GLN A 49 SHEET 1 AA3 4 SER A 76 THR A 80 0 SHEET 2 AA3 4 GLN A 85 CYS A 97 -1 O LEU A 87 N ALA A 78 SHEET 3 AA3 4 ASN A 100 PHE A 110 -1 O PHE A 110 N LEU A 86 SHEET 4 AA3 4 GLN A 119 PHE A 121 -1 O PHE A 121 N CYS A 107 SHEET 1 AA4 6 PHE A 180 PHE A 184 0 SHEET 2 AA4 6 THR A 169 TYR A 176 -1 N GLN A 175 O ARG A 181 SHEET 3 AA4 6 SER A 133 ASP A 140 1 N ILE A 135 O LEU A 170 SHEET 4 AA4 6 PHE A 234 THR A 241 1 O PHE A 234 N ASP A 134 SHEET 5 AA4 6 ILE A 265 VAL A 271 1 O TYR A 267 N VAL A 239 SHEET 6 AA4 6 VAL A 296 VAL A 299 1 O VAL A 299 N GLY A 270 SHEET 1 AA5 3 ALA A 341 ILE A 343 0 SHEET 2 AA5 3 PRO A 348 THR A 352 -1 O LEU A 349 N ALA A 342 SHEET 3 AA5 3 GLY A 361 LEU A 364 -1 O GLY A 361 N THR A 352 SHEET 1 AA6 4 ALA A 392 ARG A 397 0 SHEET 2 AA6 4 VAL A 400 TYR A 410 -1 O VAL A 400 N ARG A 397 SHEET 3 AA6 4 ILE A 413 ASN A 422 -1 O LEU A 415 N ALA A 407 SHEET 4 AA6 4 MET A 425 LYS A 433 -1 O VAL A 432 N VAL A 416 SHEET 1 AA7 4 LEU A 445 VAL A 448 0 SHEET 2 AA7 4 LEU A 458 ALA A 463 -1 O LEU A 460 N CYS A 446 SHEET 3 AA7 4 GLN A 474 PRO A 479 -1 O SER A 476 N ILE A 461 SHEET 4 AA7 4 ALA A 492 LEU A 494 -1 O LEU A 494 N VAL A 475 SHEET 1 AA8 4 LEU A 509 GLY A 513 0 SHEET 2 AA8 4 ASP A 522 ALA A 527 -1 O ASP A 522 N GLY A 513 SHEET 3 AA8 4 ALA A 536 PHE A 540 -1 O ALA A 536 N ALA A 527 SHEET 4 AA8 4 GLN A 554 ALA A 557 -1 O ILE A 556 N VAL A 537 SHEET 1 AA9 2 GLY A 542 THR A 543 0 SHEET 2 AA9 2 GLY A 547 ILE A 548 -1 O GLY A 547 N THR A 543 SHEET 1 AB1 4 THR A 695 GLU A 697 0 SHEET 2 AB1 4 ARG A 637 LYS A 644 -1 N VAL A 638 O GLU A 697 SHEET 3 AB1 4 VAL A 602 GLU A 610 -1 N LYS A 606 O HIS A 641 SHEET 4 AB1 4 VAL A 736 LEU A 737 1 O VAL A 736 N LEU A 603 SHEET 1 AB2 3 GLY A 630 LYS A 631 0 SHEET 2 AB2 3 LEU A 701 PRO A 704 -1 O LEU A 703 N LYS A 631 SHEET 3 AB2 3 VAL A 675 PHE A 676 -1 N VAL A 675 O GLN A 702 SHEET 1 AB3 3 ARG A 684 LEU A 690 0 SHEET 2 AB3 3 SER A 657 LEU A 665 -1 N TYR A 661 O GLN A 686 SHEET 3 AB3 3 LEU A 722 GLY A 724 -1 O VAL A 723 N VAL A 658 SHEET 1 AB4 4 ARG A 684 LEU A 690 0 SHEET 2 AB4 4 SER A 657 LEU A 665 -1 N TYR A 661 O GLN A 686 SHEET 3 AB4 4 ILE A 714 ASN A 719 -1 O ARG A 717 N ALA A 664 SHEET 4 AB4 4 LEU A 744 PHE A 749 -1 O PHE A 749 N ILE A 714 SHEET 1 AB5 3 CYS B 40 ASP B 41 0 SHEET 2 AB5 3 THR B 22 CYS B 24 -1 N THR B 22 O ASP B 41 SHEET 3 AB5 3 ILE B 56 MET B 57 -1 O MET B 57 N TRP B 23 SHEET 1 AB6 6 LEU B 62 THR B 65 0 SHEET 2 AB6 6 LYS B 80 LEU B 85 -1 O THR B 82 N GLU B 64 SHEET 3 AB6 6 ILE B 414 PRO B 421 1 O LEU B 420 N LEU B 83 SHEET 4 AB6 6 GLN B 402 LEU B 409 -1 N GLN B 402 O VAL B 419 SHEET 5 AB6 6 VAL B 345 HIS B 349 -1 N PHE B 346 O LEU B 409 SHEET 6 AB6 6 GLY B 376 CYS B 378 -1 O GLY B 376 N LEU B 347 SHEET 1 AB7 5 LEU B 76 SER B 77 0 SHEET 2 AB7 5 ALA B 90 ARG B 98 -1 O THR B 96 N SER B 77 SHEET 3 AB7 5 PRO B 386 ALA B 395 -1 O PHE B 389 N VAL B 95 SHEET 4 AB7 5 LEU B 356 PHE B 363 -1 N ASP B 361 O GLN B 390 SHEET 5 AB7 5 THR B 369 GLN B 373 -1 O GLN B 373 N TYR B 360 SHEET 1 AB8 6 PHE B 182 THR B 189 0 SHEET 2 AB8 6 ARG B 143 PHE B 149 -1 N ILE B 144 O THR B 189 SHEET 3 AB8 6 ASP B 106 ASP B 112 1 N TYR B 109 O GLY B 147 SHEET 4 AB8 6 ARG B 235 THR B 241 1 O VAL B 238 N LEU B 110 SHEET 5 AB8 6 ILE B 294 THR B 301 1 O ILE B 297 N LEU B 237 SHEET 6 AB8 6 ALA B 319 LEU B 323 1 O ALA B 319 N PHE B 298 SHEET 1 AB9 4 GLN C 4 THR C 8 0 SHEET 2 AB9 4 LEU C 19 SER C 26 -1 O SER C 22 N THR C 8 SHEET 3 AB9 4 SER C 78 MET C 83 -1 O MET C 83 N LEU C 19 SHEET 4 AB9 4 PHE C 68 ASP C 73 -1 N SER C 71 O TYR C 80 SHEET 1 AC1 6 GLY C 11 GLN C 14 0 SHEET 2 AC1 6 THR C 115 SER C 120 1 O THR C 118 N VAL C 13 SHEET 3 AC1 6 ALA C 92 ALA C 98 -1 N TYR C 94 O THR C 115 SHEET 4 AC1 6 MET C 35 GLN C 40 -1 N PHE C 38 O TYR C 95 SHEET 5 AC1 6 GLU C 47 ILE C 52 -1 O ALA C 50 N TRP C 37 SHEET 6 AC1 6 THR C 58 TYR C 60 -1 O ASN C 59 N ALA C 51 SHEET 1 AC2 4 GLY C 11 GLN C 14 0 SHEET 2 AC2 4 THR C 115 SER C 120 1 O THR C 118 N VAL C 13 SHEET 3 AC2 4 ALA C 92 ALA C 98 -1 N TYR C 94 O THR C 115 SHEET 4 AC2 4 TYR C 110 TRP C 111 -1 O TYR C 110 N ALA C 98 SSBOND 1 CYS A 50 CYS A 57 1555 1555 2.03 SSBOND 2 CYS A 89 CYS A 107 1555 1555 2.03 SSBOND 3 CYS A 97 CYS A 128 1555 1555 2.03 SSBOND 4 CYS A 478 CYS A 490 1555 1555 2.03 SSBOND 5 CYS A 623 CYS A 706 1555 1555 2.03 SSBOND 6 CYS A 639 CYS A 696 1555 1555 2.03 SSBOND 7 CYS B 3 CYS B 21 1555 1555 2.03 SSBOND 8 CYS B 11 CYS B 425 1555 1555 2.02 SSBOND 9 CYS B 14 CYS B 40 1555 1555 2.03 SSBOND 10 CYS B 24 CYS B 51 1555 1555 2.03 SSBOND 11 CYS B 169 CYS B 176 1555 1555 2.03 SSBOND 12 CYS B 224 CYS B 264 1555 1555 2.03 SSBOND 13 CYS B 364 CYS B 378 1555 1555 2.03 SSBOND 14 CYS B 398 CYS B 423 1555 1555 2.03 SSBOND 15 CYS B 427 CYS B 445 1555 1555 2.03 SSBOND 16 CYS B 437 CYS B 448 1555 1555 2.03 SSBOND 17 CYS B 450 CYS B 459 1555 1555 2.03 LINK ND2 ASN A 70 C1 NAG E 1 1555 1555 1.47 LINK ND2 ASN A 375 C1 NAG D 1 1555 1555 1.44 LINK ND2 ASN A 719 C1 NAG F 1 1555 1555 1.44 LINK ND2 ASN B 94 C1 NAG G 1 1555 1555 1.46 LINK ND2 ASN B 190 C1 NAG B 501 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.45 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.48 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.45 LINK O4 NAG G 1 C1 NAG G 2 1555 1555 1.43 LINK OD1 ASP A 514 CA CA A2001 1555 1555 2.44 LINK OD1 ASN A 516 CA CA A2001 1555 1555 2.49 LINK OD1 ASP A 518 CA CA A2001 1555 1555 2.27 LINK O LEU A 520 CA CA A2001 1555 1555 2.34 LINK OD1 ASP A 522 CA CA A2001 1555 1555 2.44 LINK OD2 ASP A 522 CA CA A2001 1555 1555 2.27 LINK OG1 THR A 579 CA CA A2002 1555 1555 2.44 LINK OD1 ASP A 581 CA CA A2002 1555 1555 2.21 LINK OD2 ASP A 581 CA CA A2002 1555 1555 2.47 LINK O LEU A 583 CA CA A2002 1555 1555 2.67 LINK OD1 ASP A 585 CA CA A2002 1555 1555 2.31 LINK OD2 ASP A 585 CA CA A2002 1555 1555 3.03 CISPEP 1 PHE A 121 PRO A 122 0 -6.93 CISPEP 2 LYS A 290 PRO A 291 0 -2.06 CISPEP 3 SER B 77 PRO B 78 0 -3.77 CISPEP 4 LEU B 155 PRO B 156 0 -1.38 CRYST1 114.100 114.100 250.120 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008764 0.005060 0.000000 0.00000 SCALE2 0.000000 0.010120 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003998 0.00000